Wall clock time and date at job start Fri Apr 10 2020 17:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 126.14597 * 2 1 4 4 N 1.26242 * 116.58371 * 180.02562 * 3 2 1 5 5 C 1.29892 * 117.66405 * 0.02562 * 4 3 2 6 6 N 1.39079 * 125.65786 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99724 * 0.02562 * 6 5 4 8 8 O 1.21583 * 120.00271 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99726 * 179.72728 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 9 7 6 11 11 C 1.50701 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99900 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00245 * 180.02562 * 13 11 10 15 15 H 1.08008 * 119.99981 * 359.97438 * 14 13 11 16 16 C 1.38944 * 120.00493 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00524 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46954 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47531 * 119.99590 * 18 16 14 21 21 H 1.48494 * 109.47552 * 239.99987 * 18 16 14 22 22 S 1.71313 * 108.68468 * 0.25999 * 5 4 3 23 23 H 1.09000 * 109.47449 * 90.02313 * 1 2 3 24 24 H 1.08999 * 109.47584 * 210.02386 * 1 2 3 25 25 H 1.09003 * 109.47502 * 330.02129 * 1 2 3 26 26 H 0.97000 * 119.99793 * 180.02562 * 6 5 4 27 27 H 0.97000 * 119.99736 * 0.26820 * 9 7 6 28 28 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 29 29 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 30 30 H 0.97003 * 119.99587 * 0.02562 * 13 11 10 31 31 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2708 1.0458 0.0000 4 7 3.5157 0.8361 -0.0005 5 6 3.9193 -0.3986 -0.0015 6 7 5.2453 -0.8181 -0.0027 7 6 6.2398 0.0915 -0.0023 8 8 5.9778 1.2788 -0.0015 9 7 7.5248 -0.3150 0.0021 10 6 8.6059 0.6736 0.0085 11 6 9.9355 -0.0358 0.0131 12 8 9.9760 -1.2480 0.0107 13 7 11.0795 0.6767 0.0189 14 6 12.2890 0.0313 0.0225 15 1 12.3251 -1.0482 0.0212 16 6 13.4684 0.7658 0.0290 17 7 13.4245 2.0792 0.0311 18 14 15.1164 -0.1135 0.0347 19 1 14.8940 -1.5818 0.0318 20 1 15.8880 0.2731 -1.1738 21 1 15.8774 0.2689 1.2511 22 16 2.5473 -1.4244 -0.0092 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 5.4543 -1.7653 -0.0037 27 1 7.7338 -1.2622 0.0011 28 1 8.5309 1.2998 -0.8805 29 1 8.5236 1.2962 0.8994 30 1 11.0470 1.6461 0.0204 31 1 14.2478 2.5921 0.0352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353259804.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:07 Heat of formation + Delta-G solvation = -17.651579 kcal Electronic energy + Delta-G solvation = -18915.742838 eV Core-core repulsion = 15552.119148 eV Total energy + Delta-G solvation = -3363.623690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.43974 -41.31751 -40.09987 -36.67944 -36.23849 -35.44462 -33.43524 -33.28644 -30.01679 -28.74380 -26.70327 -25.83852 -23.36042 -21.47695 -21.04579 -20.90186 -20.05220 -19.03270 -18.50941 -17.48767 -17.41938 -16.65888 -16.64507 -16.37416 -15.75685 -15.72035 -15.32265 -15.06614 -14.23748 -14.13158 -14.01738 -13.66483 -13.55658 -13.38679 -12.92892 -12.44870 -12.43269 -12.11323 -11.93458 -11.58603 -11.44973 -10.94415 -10.58403 -10.55922 -10.43159 -10.10749 -9.77764 -8.51674 -6.02010 -0.55440 -0.52829 0.13417 1.20011 1.34852 1.43630 1.45891 1.57561 1.87836 2.00454 2.26294 2.65743 3.11109 3.15648 3.38172 3.75829 4.16698 4.22437 4.39999 4.40531 4.72454 4.75830 4.87771 5.10024 5.16809 5.38187 5.44079 5.90829 6.45988 6.60787 7.02514 7.16551 7.43021 7.66563 7.92163 8.65410 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.068897 B = 0.002613 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.308881 B =10714.194669 C =11100.034560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 N -0.277 5.277 4 N -0.324 5.324 5 C 0.220 3.780 6 N -0.622 5.622 7 C 0.702 3.298 8 O -0.574 6.574 9 N -0.707 5.707 10 C 0.140 3.860 11 C 0.435 3.565 12 O -0.622 6.622 13 N -0.559 5.559 14 C -0.335 4.335 15 H 0.088 0.912 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.998 3.002 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.272 1.272 22 S 0.195 5.805 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.441 0.559 27 H 0.416 0.584 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.399 0.601 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.421 -8.996 -0.088 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.279 4.279 3 N -0.113 5.113 4 N -0.168 5.168 5 C -0.151 4.151 6 N -0.278 5.278 7 C 0.399 3.601 8 O -0.448 6.448 9 N -0.366 5.366 10 C 0.012 3.988 11 C 0.222 3.778 12 O -0.510 6.510 13 N -0.194 5.194 14 C -0.464 4.464 15 H 0.106 0.894 16 C -0.213 4.213 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.197 1.197 22 S 0.434 5.566 23 H 0.127 0.873 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.283 0.717 27 H 0.255 0.745 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.233 0.767 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.210 -8.239 -0.095 24.629 hybrid contribution 1.486 -0.290 0.002 1.514 sum -21.724 -8.530 -0.093 23.338 Atomic orbital electron populations 1.20668 0.80373 1.06235 1.05940 1.30841 1.04896 0.88577 1.03555 1.71408 0.96066 1.27985 1.15829 1.71497 1.07250 1.17013 1.20993 1.25815 0.92301 0.93978 1.03007 1.41668 0.99710 1.11082 1.75317 1.15883 0.80845 0.84856 0.78536 1.91064 1.82616 1.15696 1.55442 1.44551 1.02299 1.11648 1.78087 1.20682 0.83182 0.90357 1.04573 1.20283 0.85974 0.87829 0.83686 1.90469 1.87490 1.14972 1.58062 1.41840 1.04703 1.09569 1.63303 1.19777 0.83126 0.93288 1.50233 0.89362 1.26153 1.03088 0.96223 0.95817 1.69687 1.30698 1.05964 1.49305 0.84797 0.76624 0.78236 0.78240 1.19267 1.19723 1.19737 1.84327 0.94020 1.08210 1.70014 0.87252 0.86743 0.88366 0.71715 0.74506 0.88616 0.88627 0.76679 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 71.23 0.75 0.25 16 2 C 0.00 0.07 7.80 88.45 0.69 0.76 16 3 N -0.28 -7.99 11.65 -47.69 -0.56 -8.54 16 4 N -0.32 -10.98 9.73 -59.09 -0.58 -11.55 16 5 C 0.22 5.69 8.14 179.10 1.46 7.14 16 6 N -0.62 -14.92 5.41 -326.97 -1.77 -16.69 16 7 C 0.70 22.80 8.53 179.05 1.53 24.33 16 8 O -0.57 -23.90 15.02 -3.98 -0.06 -23.96 16 9 N -0.71 -22.29 5.53 -482.31 -2.67 -24.96 16 10 C 0.14 5.03 6.15 85.63 0.53 5.56 16 11 C 0.44 19.52 7.85 87.66 0.69 20.21 16 12 O -0.62 -30.87 15.24 -3.05 -0.05 -30.91 16 13 N -0.56 -27.64 5.29 -306.99 -1.62 -29.26 16 14 C -0.33 -18.18 9.68 84.04 0.81 -17.37 16 15 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 17 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 18 Si 1.00 41.38 29.55 68.60 2.03 43.41 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 22 S 0.19 2.82 23.31 -56.49 -1.32 1.50 16 23 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.44 6.59 8.83 -92.71 -0.82 5.77 16 27 H 0.42 12.05 7.45 -92.71 -0.69 11.36 16 28 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 31 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -77.46 299.63 -0.39 -77.86 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -1.01 Total: 30.68 kcal Atomic # 6 Polarization: 33.80 SS G_CDS: 6.92 Total: 40.72 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -6.91 Total: -139.30 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.11 Total: -54.87 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.32 Total: 1.50 kcal Total: -77.46 -0.39 -77.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259804.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.203 kcal (2) G-P(sol) polarization free energy of solvation -77.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds