Wall clock time and date at job start Fri Apr 10 2020 17:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00172 * 2 1 4 4 O 1.20829 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00104 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47336 * 180.02562 * 5 3 2 7 7 C 1.36933 * 119.99956 * 96.09917 * 6 5 3 8 8 H 1.08002 * 120.00332 * 163.10839 * 7 6 5 9 9 C 1.38810 * 119.99739 * 342.83240 * 7 6 5 10 10 N 1.31615 * 120.00289 * 336.50878 * 9 7 6 11 11 Si 1.86805 * 120.00028 * 156.50342 * 9 7 6 12 12 H 1.48500 * 109.46858 * 59.99947 * 11 9 7 13 13 H 1.48500 * 109.47335 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47037 * 300.00293 * 11 9 7 15 15 C 1.46504 * 120.00032 * 276.10261 * 6 5 3 16 16 C 1.50706 * 109.47027 * 269.99713 * 15 6 5 17 17 C 1.38340 * 119.98147 * 94.72364 * 16 15 6 18 18 N 1.32151 * 120.01817 * 179.75623 * 17 16 15 19 19 C 1.32252 * 119.97808 * 0.51893 * 18 17 16 20 20 Cl 1.73605 * 120.01240 * 179.75715 * 19 18 17 21 21 C 1.38518 * 119.96831 * 359.73557 * 19 18 17 22 22 N 1.32112 * 119.98229 * 0.02562 * 21 19 18 23 23 H 1.08995 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46957 * 299.99651 * 1 2 3 25 25 H 1.09004 * 109.47089 * 59.99650 * 1 2 3 26 26 H 1.09003 * 109.46918 * 60.00832 * 5 3 2 27 27 H 1.08993 * 109.47612 * 300.00954 * 5 3 2 28 28 H 0.97008 * 120.00243 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.47248 * 29.99791 * 15 6 5 30 30 H 1.09000 * 109.46965 * 149.99807 * 15 6 5 31 31 H 1.07999 * 119.99675 * 0.02562 * 17 16 15 32 32 H 1.08000 * 120.00935 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2963 3.3002 1.1805 8 1 4.8539 4.2252 1.1722 9 6 3.8936 2.7434 2.3866 10 7 2.8625 1.9262 2.4225 11 14 4.8151 3.1539 3.9588 12 1 4.7533 4.6177 4.2010 13 1 4.1919 2.4361 5.0997 14 1 6.2332 2.7338 3.8254 15 6 4.0606 3.4207 -1.2603 16 6 5.4426 3.2742 -1.8434 17 6 5.6962 2.2897 -2.7816 18 7 6.9066 2.1637 -3.2969 19 6 7.8779 2.9726 -2.9079 20 17 9.4698 2.8037 -3.5797 21 6 7.6244 3.9547 -1.9645 22 7 6.4128 4.0824 -1.4537 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.9564 0.7806 -0.8893 27 1 3.9557 0.7808 0.8907 28 1 2.5808 1.5374 3.2654 29 1 3.3265 3.0238 -1.9614 30 1 3.8539 4.4749 -1.0758 31 1 4.9039 1.6267 -3.0962 32 1 8.4173 4.6153 -1.6461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788483939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:13 Heat of formation + Delta-G solvation = -31.213016 kcal Electronic energy + Delta-G solvation = -20296.810646 eV Core-core repulsion = 16898.262430 eV Total energy + Delta-G solvation = -3398.548216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11069 -40.78226 -38.07706 -37.66465 -36.50163 -35.31019 -33.94430 -32.21873 -29.96339 -28.11017 -27.64896 -25.76872 -24.85208 -23.04180 -21.54021 -19.07845 -18.64180 -18.32962 -18.11628 -17.47005 -17.03715 -16.64563 -16.59516 -16.11959 -15.46265 -15.14475 -15.07285 -14.28020 -13.95534 -13.72249 -13.43568 -13.12230 -12.82745 -12.72845 -12.68637 -12.64276 -12.42527 -12.34017 -12.10990 -12.02792 -11.98123 -11.36779 -11.16179 -10.59598 -10.17700 -10.06940 -9.04742 -7.98366 -5.31939 -0.37953 0.03128 0.62900 1.47156 1.49600 1.55989 1.97056 2.26750 2.51420 2.61354 3.10546 3.25962 3.29554 3.39574 3.57797 3.99968 4.07650 4.38831 4.44578 4.47875 4.53451 4.65527 4.69685 4.84571 5.02713 5.08173 5.19676 5.67381 5.94297 6.09863 6.18071 6.69944 6.99610 7.47510 7.72893 8.08890 9.10036 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.005485 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.104734 B = 5103.340153 C = 6343.736085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.467 3.533 4 O -0.538 6.538 5 C 0.187 3.813 6 N -0.566 5.566 7 C -0.257 4.257 8 H 0.078 0.922 9 C -0.041 4.041 10 N -0.922 5.922 11 Si 0.963 3.037 12 H -0.283 1.283 13 H -0.297 1.297 14 H -0.280 1.280 15 C 0.196 3.804 16 C 0.079 3.921 17 C 0.077 3.923 18 N -0.447 5.447 19 C 0.103 3.897 20 Cl -0.009 7.009 21 C 0.075 3.925 22 N -0.433 5.433 23 H 0.125 0.875 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.200 0.800 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 -2.154 -10.785 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.309 3.691 4 O -0.426 6.426 5 C 0.058 3.942 6 N -0.285 5.285 7 C -0.386 4.386 8 H 0.095 0.905 9 C -0.237 4.237 10 N -0.568 5.568 11 Si 0.792 3.208 12 H -0.209 1.209 13 H -0.223 1.223 14 H -0.206 1.206 15 C 0.068 3.932 16 C -0.063 4.063 17 C -0.084 4.084 18 N -0.164 5.164 19 C -0.064 4.064 20 Cl 0.019 6.981 21 C -0.086 4.086 22 N -0.148 5.148 23 H 0.143 0.857 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.217 0.783 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.832 -1.919 -10.687 12.326 hybrid contribution 0.022 0.309 1.232 1.270 sum 5.854 -1.610 -9.456 11.237 Atomic orbital electron populations 1.23176 0.77308 1.04195 1.00890 1.86493 1.23343 1.35211 1.85145 1.25529 0.93835 0.80307 0.69456 1.90459 1.67499 1.37666 1.46963 1.20316 0.85276 0.86228 1.02426 1.43967 1.74663 1.07549 1.02324 1.19414 1.27747 1.07843 0.83591 0.90468 1.25436 0.97114 1.00848 1.00302 1.70027 1.24082 1.36746 1.25920 0.85406 0.78552 0.77410 0.79434 1.20870 1.22297 1.20609 1.19720 0.88042 0.97792 0.87641 1.23612 0.98497 0.91719 0.92515 1.23888 0.93753 0.97075 0.93673 1.67811 1.00499 1.23523 1.24530 1.22977 0.90335 0.95991 0.97116 1.98401 1.17839 1.97202 1.84651 1.24049 0.95739 0.96444 0.92380 1.68497 1.00075 1.24868 1.21367 0.85692 0.94732 0.92535 0.88879 0.89280 0.94068 0.89617 0.91921 0.78317 0.78395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.56 113.37 1.20 2.42 16 2 O -0.38 -15.37 10.57 -51.42 -0.54 -15.91 16 3 C 0.47 21.22 6.17 71.23 0.44 21.66 16 4 O -0.54 -28.01 15.80 21.96 0.35 -27.66 16 5 C 0.19 7.99 5.49 85.63 0.47 8.46 16 6 N -0.57 -25.63 2.01 -710.68 -1.43 -27.06 16 7 C -0.26 -13.28 9.64 84.03 0.81 -12.47 16 8 H 0.08 4.05 7.93 -2.91 -0.02 4.03 16 9 C -0.04 -2.20 4.81 84.86 0.41 -1.79 16 10 N -0.92 -51.39 9.38 21.65 0.20 -51.19 16 11 Si 0.96 44.20 29.62 68.60 2.03 46.23 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 C 0.20 7.27 5.96 85.63 0.51 7.78 16 16 C 0.08 2.60 6.37 42.54 0.27 2.87 16 17 C 0.08 2.13 10.86 84.67 0.92 3.05 16 18 N -0.45 -12.81 10.49 -186.09 -1.95 -14.76 16 19 C 0.10 2.76 7.29 84.70 0.62 3.38 16 20 Cl -0.01 -0.20 29.13 -2.72 -0.08 -0.28 16 21 C 0.08 2.04 11.01 84.72 0.93 2.98 16 22 N -0.43 -14.58 10.42 -183.20 -1.91 -16.49 16 23 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 25 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 26 H 0.09 3.16 8.12 -2.39 -0.02 3.14 16 27 H 0.09 4.28 6.46 -2.39 -0.02 4.27 16 28 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 29 H 0.09 2.80 7.98 -2.39 -0.02 2.78 16 30 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 31 H 0.20 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -66.42 304.24 4.39 -62.02 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.15 Total: 6.75 kcal Atomic # 6 Polarization: 31.77 SS G_CDS: 6.57 Total: 38.35 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -5.09 Total: -109.50 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.20 Total: -43.57 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -66.42 4.39 -62.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788483939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.812 kcal (2) G-P(sol) polarization free energy of solvation -66.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds