Wall clock time and date at job start Fri Apr 10 2020 17:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46827 * 299.99646 * 3 2 1 6 6 H 1.48500 * 109.47185 * 59.99580 * 3 2 1 7 7 C 1.37876 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47393 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47629 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54037 * 68.37161 * 11 10 9 13 13 O 1.42104 * 110.54042 * 291.62591 * 11 10 9 14 14 N 1.65595 * 104.45001 * 179.97438 * 11 10 9 15 15 C 1.34777 * 120.00340 * 65.00357 * 14 11 10 16 16 O 1.21561 * 119.99501 * 359.97438 * 15 14 11 17 17 C 1.47820 * 120.00399 * 179.97438 * 15 14 11 18 18 C 1.39948 * 120.94208 * 179.97438 * 17 15 14 19 19 N 1.32147 * 118.92391 * 179.72965 * 18 17 15 20 20 C 1.31864 * 120.96882 * 0.25468 * 19 18 17 21 21 N 1.31867 * 122.09575 * 0.02562 * 20 19 18 22 22 C 1.32147 * 120.96831 * 359.97438 * 21 20 19 23 23 H 0.97003 * 120.00045 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46922 * 60.00077 * 9 7 2 25 25 H 1.08997 * 109.47519 * 300.00021 * 9 7 2 26 26 H 1.09005 * 109.47123 * 60.00078 * 10 9 7 27 27 H 1.09004 * 109.47336 * 300.00280 * 10 9 7 28 28 H 0.96998 * 119.99631 * 244.99567 * 14 11 10 29 29 H 1.08002 * 120.53917 * 0.02562 * 18 17 15 30 30 H 1.08002 * 118.95355 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.53954 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 16 1.3381 -5.2331 0.0011 12 8 0.6654 -5.4199 -1.2367 13 8 0.6627 -5.4195 1.2374 14 7 2.5203 -6.3927 0.0018 15 6 3.3460 -6.5127 1.0603 16 8 3.2232 -5.7692 2.0142 17 6 4.4009 -7.5482 1.0612 18 6 5.2693 -7.6897 2.1495 19 7 6.1945 -8.6324 2.1105 20 6 6.3087 -9.4283 1.0653 21 7 5.5155 -9.3261 0.0169 22 6 4.5629 -8.4113 -0.0285 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8711 -3.6040 0.8923 27 1 2.8725 -3.6048 -0.8877 28 1 2.6183 -6.9857 -0.7595 29 1 5.1816 -7.0421 3.0094 30 1 7.0762 -10.1881 1.0681 31 1 3.9168 -8.3340 -0.8905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321083995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:08 Heat of formation + Delta-G solvation = -61.301484 kcal Electronic energy + Delta-G solvation = -19717.946655 eV Core-core repulsion = 16320.137411 eV Total energy + Delta-G solvation = -3397.809244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71666 -39.88361 -36.82766 -35.74541 -35.02864 -34.14040 -33.94674 -32.60508 -31.23882 -26.09572 -25.65391 -25.07773 -22.37961 -21.71751 -19.72328 -18.88128 -18.13475 -17.96668 -17.30546 -16.55477 -16.07076 -15.55862 -15.40218 -15.15473 -14.68294 -14.57669 -14.22016 -14.07544 -13.51981 -12.62039 -12.51070 -12.23109 -11.88449 -11.82196 -11.72889 -11.42883 -11.15693 -11.09784 -11.01530 -10.59535 -10.42228 -10.40928 -10.30043 -9.84117 -9.77144 -9.23074 -8.53603 -6.15754 -4.21413 -0.16128 0.35410 0.49435 2.09687 2.51231 3.24305 3.26385 3.31657 3.35122 3.45605 3.60656 3.76941 3.94021 3.98264 4.25357 4.34522 4.52147 4.66384 4.79498 5.17343 5.19829 5.50256 5.63360 5.71916 6.26252 6.34974 6.41914 7.13054 7.23538 7.29547 7.43845 7.77406 8.12227 8.81795 9.43562 10.95335 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.004060 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.799005 B = 6894.273477 C = 7516.788123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.573 4.573 11 S 2.564 3.436 12 O -0.949 6.949 13 O -0.934 6.934 14 N -1.055 6.055 15 C 0.592 3.408 16 O -0.475 6.475 17 C -0.248 4.248 18 C 0.217 3.783 19 N -0.521 5.521 20 C 0.319 3.681 21 N -0.521 5.521 22 C 0.191 3.809 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.132 0.868 27 H 0.123 0.877 28 H 0.426 0.574 29 H 0.188 0.812 30 H 0.205 0.795 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -17.865 -0.563 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.708 4.708 11 S 2.664 3.336 12 O -0.940 6.940 13 O -0.924 6.924 14 N -0.815 5.815 15 C 0.377 3.623 16 O -0.346 6.346 17 C -0.257 4.257 18 C 0.050 3.950 19 N -0.234 5.234 20 C 0.033 3.967 21 N -0.235 5.235 22 C 0.023 3.977 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.262 0.738 29 H 0.205 0.795 30 H 0.221 0.779 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.863 -18.175 0.168 21.175 hybrid contribution 0.383 1.439 -0.537 1.583 sum 11.246 -16.736 -0.369 20.167 Atomic orbital electron populations 1.69962 1.06117 1.27183 1.49509 1.25065 0.94996 0.99582 0.94811 0.86386 0.79921 0.83030 0.77787 1.19624 1.20785 1.20729 1.21002 0.93142 0.89511 1.52256 0.91884 1.19013 0.92624 0.90279 0.99133 1.30341 1.13733 1.15835 1.10916 1.06882 0.74886 0.77234 0.74610 1.93604 1.70201 1.85223 1.44926 1.93610 1.69940 1.84291 1.44531 1.55450 1.49130 1.50612 1.26336 1.17657 0.80119 0.83033 0.81514 1.91022 1.69137 1.42252 1.32221 1.21730 1.01966 1.02014 1.00038 1.23671 0.84910 0.90594 0.95810 1.68638 1.21227 1.05737 1.27786 1.25385 0.94005 0.93955 0.83337 1.68527 1.05737 1.21251 1.27949 1.23554 0.91790 0.86547 0.95762 0.92519 0.94667 0.94481 0.84954 0.85889 0.73811 0.79545 0.77896 0.80741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 10 C -0.57 -10.79 5.82 37.15 0.22 -10.58 16 11 S 2.56 43.65 5.11 -107.50 -0.55 43.10 16 12 O -0.95 -17.66 18.08 -57.54 -1.04 -18.70 16 13 O -0.93 -19.41 17.04 -64.78 -1.10 -20.52 16 14 N -1.05 -12.10 5.56 30.52 0.17 -11.93 16 15 C 0.59 7.25 7.53 -12.34 -0.09 7.15 16 16 O -0.48 -7.52 14.55 -11.79 -0.17 -7.69 16 17 C -0.25 -2.34 5.91 -104.70 -0.62 -2.96 16 18 C 0.22 2.02 10.88 -16.78 -0.18 1.84 16 19 N -0.52 -4.67 10.42 -14.25 -0.15 -4.82 16 20 C 0.32 2.36 12.27 -92.03 -1.13 1.23 16 21 N -0.52 -4.26 10.42 -14.24 -0.15 -4.40 16 22 C 0.19 1.45 10.81 -16.77 -0.18 1.27 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.13 2.42 7.19 -51.92 -0.37 2.05 16 27 H 0.12 1.97 8.14 -51.92 -0.42 1.54 16 28 H 0.43 3.02 6.93 -34.46 -0.24 2.78 16 29 H 0.19 1.55 7.75 -52.49 -0.41 1.15 16 30 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.18 0.74 6.54 -52.49 -0.34 0.40 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -36.89 295.02 -7.96 -44.85 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -2.59 Total: -0.48 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.54 Total: -14.46 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.61 Total: -46.60 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -2.32 Total: -46.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 43.65 SS G_CDS: -0.55 Total: 43.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -36.89 -7.96 -44.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321083995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.452 kcal (2) G-P(sol) polarization free energy of solvation -36.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds