Wall clock time and date at job start Fri Apr 10 2020 17:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47386 * 2 1 4 4 N 1.46905 * 109.47206 * 120.00394 * 2 1 3 5 5 C 1.53006 * 109.47027 * 239.99653 * 2 1 3 6 6 N 1.46497 * 109.47109 * 184.99647 * 5 2 1 7 7 C 1.46494 * 120.00407 * 270.00053 * 6 5 2 8 8 C 1.34784 * 119.99519 * 90.01074 * 6 5 2 9 9 O 1.21588 * 119.99946 * 359.97438 * 8 6 5 10 10 N 1.34775 * 119.99620 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99598 * 179.97438 * 10 8 6 12 12 C 1.53046 * 109.45689 * 275.02271 * 11 10 8 13 13 C 1.53192 * 109.30999 * 178.59927 * 12 11 10 14 14 N 1.46930 * 108.76274 * 54.65964 * 13 12 11 15 15 C 1.36938 * 120.63277 * 126.40557 * 14 13 12 16 16 H 1.08004 * 119.99301 * 331.81879 * 15 14 13 17 17 C 1.38810 * 120.00408 * 151.82115 * 15 14 13 18 18 N 1.31625 * 119.99757 * 343.07951 * 17 15 14 19 19 Si 1.86794 * 120.00124 * 163.07597 * 17 15 14 20 20 H 1.48509 * 109.46901 * 60.00432 * 19 17 15 21 21 H 1.48500 * 109.47254 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47461 * 300.00344 * 19 17 15 23 23 C 1.46927 * 118.73771 * 306.38088 * 14 13 12 24 24 C 1.53041 * 109.46055 * 154.97123 * 11 10 8 25 25 H 1.09007 * 109.46741 * 299.99954 * 1 2 3 26 26 H 1.08995 * 109.47561 * 59.99651 * 1 2 3 27 27 H 1.09005 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.00902 * 110.99761 * 296.03865 * 4 2 1 29 29 H 1.00901 * 111.00083 * 59.99587 * 4 2 1 30 30 H 1.08999 * 109.47558 * 305.00339 * 5 2 1 31 31 H 1.09004 * 109.46286 * 65.00503 * 5 2 1 32 32 H 1.09000 * 109.46626 * 90.00444 * 7 6 5 33 33 H 1.08999 * 109.47228 * 210.00114 * 7 6 5 34 34 H 1.08991 * 109.47387 * 330.00872 * 7 6 5 35 35 H 0.97000 * 120.00440 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.45826 * 34.99595 * 11 10 8 37 37 H 1.08995 * 109.50015 * 298.57175 * 12 11 10 38 38 H 1.09000 * 109.49532 * 58.66755 * 12 11 10 39 39 H 1.09000 * 109.60389 * 294.87268 * 13 12 11 40 40 H 1.09003 * 109.70303 * 174.50506 * 13 12 11 41 41 H 0.96994 * 119.99588 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58898 * 293.82458 * 23 14 13 43 43 H 1.09002 * 109.70558 * 173.46752 * 23 14 13 44 44 H 1.08998 * 109.49654 * 301.34218 * 24 11 10 45 45 H 1.09001 * 109.49527 * 61.39545 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0400 -0.7214 -1.2493 6 7 3.5000 -0.8264 -1.1906 7 6 4.3342 0.2339 -1.7614 8 6 4.0757 -1.8988 -0.6117 9 8 3.3832 -2.7788 -0.1377 10 7 5.4189 -1.9958 -0.5582 11 6 6.0446 -3.1612 0.0716 12 6 6.1471 -2.9313 1.5812 13 6 6.7697 -4.1660 2.2405 14 7 8.0530 -4.4548 1.5859 15 6 9.1995 -4.5826 2.3238 16 1 9.2990 -4.0571 3.2621 17 6 10.2336 -5.3874 1.8659 18 7 10.0071 -6.2762 0.9218 19 14 11.9464 -5.2092 2.5894 20 1 11.8984 -5.4824 4.0484 21 1 12.8633 -6.1769 1.9352 22 1 12.4392 -3.8271 2.3606 23 6 8.0828 -4.6043 0.1246 24 6 7.4451 -3.3650 -0.5110 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7503 -0.1990 2.0372 29 1 1.6961 -1.6480 1.2227 30 1 1.6053 -1.7199 -1.2952 31 1 1.7516 -0.1583 -2.1369 32 1 4.5400 0.9846 -0.9984 33 1 5.2733 -0.1927 -2.1139 34 1 3.8102 0.6988 -2.5964 35 1 5.9713 -1.2940 -0.9367 36 1 5.4389 -4.0468 -0.1207 37 1 6.7731 -2.0604 1.7749 38 1 5.1515 -2.7629 1.9919 39 1 6.1006 -5.0187 2.1252 40 1 6.9355 -3.9723 3.3003 41 1 10.7298 -6.8383 0.6016 42 1 7.5207 -5.4928 -0.1633 43 1 9.1144 -4.6989 -0.2142 44 1 7.3736 -3.5051 -1.5896 45 1 8.0587 -2.4897 -0.2979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328960358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:30 Heat of formation + Delta-G solvation = -5.367209 kcal Electronic energy + Delta-G solvation = -23672.893208 eV Core-core repulsion = 20339.974532 eV Total energy + Delta-G solvation = -3332.918677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01918 -37.70570 -36.46745 -34.62135 -34.10590 -31.88899 -30.02701 -29.39771 -28.97800 -27.49693 -25.91757 -24.54521 -22.14965 -21.88828 -20.93645 -19.60858 -19.18150 -17.89087 -16.65270 -16.33892 -16.15295 -15.26343 -14.89997 -14.55470 -14.16483 -13.88409 -13.50298 -13.45908 -13.35656 -13.17057 -12.98937 -12.84475 -12.59150 -12.38647 -12.25305 -12.15579 -11.64208 -11.33750 -11.18998 -11.02682 -10.70632 -10.65783 -10.39060 -10.16846 -9.94468 -9.77685 -9.62033 -9.41525 -8.72607 -8.57849 -8.41998 -8.22732 -6.60834 -5.73579 -3.15313 2.88523 3.42089 3.47442 3.48919 3.65688 4.19124 4.50667 4.54732 4.70293 4.90012 4.98483 5.08636 5.19567 5.30858 5.41849 5.52081 5.53586 5.56087 5.57396 5.62510 5.70257 5.76256 5.93792 6.04154 6.20821 6.42045 6.47538 6.52202 6.63750 6.73743 6.77410 6.92390 7.06886 7.12853 7.21249 7.26630 7.40666 7.51912 7.69341 7.84697 8.32062 8.51216 9.02493 9.27259 9.90855 10.48455 11.35324 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.003451 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.075835 B = 8111.147781 C = 8355.916034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 H 0.074 0.926 4 N -0.832 5.832 5 C 0.142 3.858 6 N -0.628 5.628 7 C 0.083 3.917 8 C 0.718 3.282 9 O -0.586 6.586 10 N -0.742 5.742 11 C 0.171 3.829 12 C -0.136 4.136 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.176 3.824 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.332 0.668 29 H 0.350 0.650 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.388 0.612 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 14.914 -6.508 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.043 4.043 3 H 0.092 0.908 4 N -0.362 5.362 5 C 0.017 3.983 6 N -0.365 5.365 7 C -0.061 4.061 8 C 0.420 3.580 9 O -0.463 6.463 10 N -0.396 5.396 11 C 0.067 3.933 12 C -0.176 4.176 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.049 3.951 24 C -0.186 4.186 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.165 0.835 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.910 14.230 -6.522 21.619 hybrid contribution 0.122 0.543 0.374 0.670 sum -14.788 14.773 -6.148 21.788 Atomic orbital electron populations 1.22614 0.97753 1.02193 1.02041 1.21859 0.91662 0.98386 0.92396 0.90759 1.58723 1.67461 1.06872 1.03131 1.21316 0.79499 1.01487 0.95978 1.46731 1.05860 1.21405 1.62502 1.21641 0.95340 0.90973 0.98126 1.15695 0.82299 0.81710 0.78338 1.90822 1.62252 1.40801 1.52474 1.45625 1.04577 1.25771 1.63630 1.20832 0.93385 0.86794 0.92303 1.22347 0.99983 1.00129 0.95186 1.20887 0.87909 0.93463 0.95650 1.44089 1.02942 1.82858 1.01698 1.19162 0.92521 1.21660 1.04680 0.91746 1.25046 0.99420 0.95764 0.99510 1.70023 1.31245 1.21722 1.31888 0.86368 0.84469 0.77285 0.78633 1.20926 1.21689 1.21097 1.20715 1.00715 0.90672 0.82981 1.22538 0.94677 1.02574 0.98860 0.92675 0.92259 0.92405 0.85619 0.83468 0.90104 0.90808 0.93066 0.91656 0.91486 0.77787 0.90341 0.92744 0.92406 0.96286 0.92777 0.93621 0.96191 0.89181 0.92977 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.48 37.16 0.35 -0.99 16 2 C 0.07 0.64 3.66 -67.71 -0.25 0.40 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 N -0.83 -9.48 7.83 -4.66 -0.04 -9.52 16 5 C 0.14 1.42 5.21 -4.04 -0.02 1.40 16 6 N -0.63 -7.44 2.78 -187.35 -0.52 -7.96 16 7 C 0.08 0.71 10.25 59.84 0.61 1.32 16 8 C 0.72 11.38 7.58 -86.91 -0.66 10.72 16 9 O -0.59 -11.19 14.11 5.29 0.07 -11.12 16 10 N -0.74 -11.45 4.94 -58.62 -0.29 -11.74 16 11 C 0.17 3.16 2.42 -67.88 -0.16 3.00 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.32 6.52 -3.71 -0.02 3.29 16 14 N -0.59 -15.24 2.99 -172.32 -0.52 -15.75 16 15 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 16 H 0.06 1.77 7.89 -52.48 -0.41 1.35 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.48 11.19 55.49 0.62 -25.85 16 19 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.18 4.24 5.30 -3.71 -0.02 4.22 16 24 C -0.15 -2.80 5.55 -26.61 -0.15 -2.95 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.33 3.24 9.07 -39.29 -0.36 2.88 16 29 H 0.35 4.52 8.09 -39.29 -0.32 4.20 16 30 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 31 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.53 6.36 -51.93 -0.33 0.20 16 34 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 35 H 0.39 5.06 6.33 -40.82 -0.26 4.80 16 36 H 0.08 1.64 7.57 -51.93 -0.39 1.24 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -32.11 351.26 -8.89 -41.00 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.79 Total: 8.42 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.70 Total: 10.41 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.74 Total: -70.83 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.11 -8.89 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328960358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.632 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds