Wall clock time and date at job start Fri Apr 10 2020 17:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47386 * 2 1 4 4 N 1.46905 * 109.47206 * 120.00394 * 2 1 3 5 5 C 1.53006 * 109.47027 * 239.99653 * 2 1 3 6 6 N 1.46497 * 109.47109 * 184.99647 * 5 2 1 7 7 C 1.46494 * 120.00407 * 270.00053 * 6 5 2 8 8 C 1.34784 * 119.99519 * 90.01074 * 6 5 2 9 9 O 1.21588 * 119.99946 * 359.97438 * 8 6 5 10 10 N 1.34775 * 119.99620 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99598 * 179.97438 * 10 8 6 12 12 C 1.53046 * 109.45689 * 275.02271 * 11 10 8 13 13 C 1.53192 * 109.30999 * 178.59927 * 12 11 10 14 14 N 1.46930 * 108.76274 * 54.65964 * 13 12 11 15 15 C 1.36938 * 120.63277 * 126.40557 * 14 13 12 16 16 H 1.08004 * 119.99301 * 331.81879 * 15 14 13 17 17 C 1.38810 * 120.00408 * 151.82115 * 15 14 13 18 18 N 1.31625 * 119.99757 * 343.07951 * 17 15 14 19 19 Si 1.86794 * 120.00124 * 163.07597 * 17 15 14 20 20 H 1.48509 * 109.46901 * 60.00432 * 19 17 15 21 21 H 1.48500 * 109.47254 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47461 * 300.00344 * 19 17 15 23 23 C 1.46927 * 118.73771 * 306.38088 * 14 13 12 24 24 C 1.53041 * 109.46055 * 154.97123 * 11 10 8 25 25 H 1.09007 * 109.46741 * 299.99954 * 1 2 3 26 26 H 1.08995 * 109.47561 * 59.99651 * 1 2 3 27 27 H 1.09005 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.00902 * 110.99761 * 296.03865 * 4 2 1 29 29 H 1.00901 * 111.00083 * 59.99587 * 4 2 1 30 30 H 1.08999 * 109.47558 * 305.00339 * 5 2 1 31 31 H 1.09004 * 109.46286 * 65.00503 * 5 2 1 32 32 H 1.09000 * 109.46626 * 90.00444 * 7 6 5 33 33 H 1.08999 * 109.47228 * 210.00114 * 7 6 5 34 34 H 1.08991 * 109.47387 * 330.00872 * 7 6 5 35 35 H 0.97000 * 120.00440 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.45826 * 34.99595 * 11 10 8 37 37 H 1.08995 * 109.50015 * 298.57175 * 12 11 10 38 38 H 1.09000 * 109.49532 * 58.66755 * 12 11 10 39 39 H 1.09000 * 109.60389 * 294.87268 * 13 12 11 40 40 H 1.09003 * 109.70303 * 174.50506 * 13 12 11 41 41 H 0.96994 * 119.99588 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58898 * 293.82458 * 23 14 13 43 43 H 1.09002 * 109.70558 * 173.46752 * 23 14 13 44 44 H 1.08998 * 109.49654 * 301.34218 * 24 11 10 45 45 H 1.09001 * 109.49527 * 61.39545 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0400 -0.7214 -1.2493 6 7 3.5000 -0.8264 -1.1906 7 6 4.3342 0.2339 -1.7614 8 6 4.0757 -1.8988 -0.6117 9 8 3.3832 -2.7788 -0.1377 10 7 5.4189 -1.9958 -0.5582 11 6 6.0446 -3.1612 0.0716 12 6 6.1471 -2.9313 1.5812 13 6 6.7697 -4.1660 2.2405 14 7 8.0530 -4.4548 1.5859 15 6 9.1995 -4.5826 2.3238 16 1 9.2990 -4.0571 3.2621 17 6 10.2336 -5.3874 1.8659 18 7 10.0071 -6.2762 0.9218 19 14 11.9464 -5.2092 2.5894 20 1 11.8984 -5.4824 4.0484 21 1 12.8633 -6.1769 1.9352 22 1 12.4392 -3.8271 2.3606 23 6 8.0828 -4.6043 0.1246 24 6 7.4451 -3.3650 -0.5110 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7503 -0.1990 2.0372 29 1 1.6961 -1.6480 1.2227 30 1 1.6053 -1.7199 -1.2952 31 1 1.7516 -0.1583 -2.1369 32 1 4.5400 0.9846 -0.9984 33 1 5.2733 -0.1927 -2.1139 34 1 3.8102 0.6988 -2.5964 35 1 5.9713 -1.2940 -0.9367 36 1 5.4389 -4.0468 -0.1207 37 1 6.7731 -2.0604 1.7749 38 1 5.1515 -2.7629 1.9919 39 1 6.1006 -5.0187 2.1252 40 1 6.9355 -3.9723 3.3003 41 1 10.7298 -6.8383 0.6016 42 1 7.5207 -5.4928 -0.1633 43 1 9.1144 -4.6989 -0.2142 44 1 7.3736 -3.5051 -1.5896 45 1 8.0587 -2.4897 -0.2979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328960358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:29 Heat of formation + Delta-G solvation = -28.252070 kcal Electronic energy + Delta-G solvation = -23673.885571 eV Core-core repulsion = 20339.974532 eV Total energy + Delta-G solvation = -3333.911039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20231 -39.22275 -37.57242 -35.86830 -35.46955 -33.69878 -31.74025 -31.08595 -29.87614 -28.22165 -27.24872 -26.09916 -23.89308 -23.53932 -21.86009 -21.08435 -20.53561 -19.17969 -18.45644 -17.46901 -17.09283 -16.81823 -16.22786 -15.90600 -15.52045 -15.32373 -15.17002 -14.80221 -14.59759 -14.44076 -14.05122 -13.96615 -13.77806 -13.59030 -13.22770 -13.16447 -12.99107 -12.91370 -12.54300 -12.49930 -12.31811 -12.18344 -12.00231 -11.90414 -11.82680 -11.50276 -11.29089 -10.93647 -10.53072 -9.92879 -9.51007 -9.23339 -8.68754 -7.85940 -5.31800 1.49793 1.51700 1.59113 1.82851 2.45620 2.53740 3.12276 3.30387 3.69177 3.74819 3.95632 3.98695 4.13654 4.22786 4.32420 4.39985 4.44407 4.49878 4.55178 4.68479 4.69723 4.82149 4.86295 4.88972 4.91604 4.95893 5.04035 5.10894 5.14794 5.20060 5.28561 5.33360 5.49228 5.65944 5.67701 5.73836 5.76330 6.11854 6.40759 6.41815 6.65661 7.16137 7.19935 7.83719 7.85755 8.39383 9.21107 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.003451 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.075835 B = 8111.147781 C = 8355.916034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 H 0.083 0.917 4 N -0.848 5.848 5 C 0.137 3.863 6 N -0.622 5.622 7 C 0.077 3.923 8 C 0.710 3.290 9 O -0.624 6.624 10 N -0.733 5.733 11 C 0.185 3.815 12 C -0.117 4.117 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.266 4.266 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.181 3.819 24 C -0.128 4.128 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.338 0.662 29 H 0.339 0.661 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.006 0.994 40 H 0.055 0.945 41 H 0.251 0.749 42 H -0.006 1.006 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 17.656 -7.253 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.040 4.040 3 H 0.101 0.899 4 N -0.378 5.378 5 C 0.013 3.987 6 N -0.358 5.358 7 C -0.066 4.066 8 C 0.412 3.588 9 O -0.505 6.505 10 N -0.389 5.389 11 C 0.079 3.921 12 C -0.158 4.158 13 C 0.020 3.980 14 N -0.333 5.333 15 C -0.396 4.396 16 H 0.084 0.916 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.055 3.945 24 C -0.167 4.167 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.240 0.760 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.169 17.056 -7.290 23.962 hybrid contribution 0.113 -0.306 0.601 0.684 sum -15.056 16.750 -6.689 23.494 Atomic orbital electron populations 1.22505 0.96225 1.01866 1.03140 1.21878 0.92852 0.98182 0.91060 0.89865 1.58754 1.68108 1.06499 1.04413 1.21533 0.78313 1.00938 0.97932 1.46794 1.06919 1.20828 1.61259 1.21893 0.95463 0.90073 0.99173 1.15902 0.82023 0.82395 0.78468 1.90803 1.62990 1.42555 1.54147 1.45266 1.04865 1.25168 1.63599 1.20392 0.92682 0.87215 0.91793 1.22110 0.99508 0.98468 0.95671 1.20958 0.86711 0.94348 0.95986 1.44343 1.03492 1.83054 1.02364 1.19499 0.93515 1.21535 1.05044 0.91575 1.25832 1.02998 0.95488 1.00179 1.70187 1.32065 1.22590 1.33321 0.85300 0.79642 0.77337 0.77893 1.20330 1.21973 1.20101 1.20538 0.99145 0.92122 0.82744 1.22254 0.94590 1.00198 0.99706 0.92207 0.90496 0.93440 0.84927 0.84789 0.92457 0.87343 0.92465 0.91223 0.88498 0.76032 0.92944 0.92235 0.92420 0.97624 0.92641 0.93994 0.98834 0.91851 0.90714 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.48 71.98 0.68 -1.53 16 2 C 0.07 1.19 3.66 44.92 0.16 1.36 16 3 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 4 N -0.85 -18.68 7.83 -168.67 -1.32 -20.00 16 5 C 0.14 2.45 5.21 86.38 0.45 2.90 16 6 N -0.62 -13.33 2.78 -864.92 -2.40 -15.73 16 7 C 0.08 1.02 10.25 127.77 1.31 2.33 16 8 C 0.71 21.72 7.58 179.05 1.36 23.08 16 9 O -0.62 -23.98 14.11 -3.99 -0.06 -24.04 16 10 N -0.73 -21.46 4.94 -457.65 -2.26 -23.72 16 11 C 0.18 6.75 2.42 45.02 0.11 6.86 16 12 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16 13 C 0.15 6.66 6.52 86.36 0.56 7.22 16 14 N -0.61 -31.80 2.99 -699.09 -2.09 -33.89 16 15 C -0.27 -14.96 9.58 84.03 0.81 -14.15 16 16 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 17 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 18 N -0.94 -55.98 11.19 21.65 0.24 -55.74 16 19 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.18 8.91 5.30 86.36 0.46 9.37 16 24 C -0.13 -4.78 5.55 30.67 0.17 -4.61 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.34 6.34 9.07 -89.69 -0.81 5.53 16 29 H 0.34 8.84 8.09 -89.69 -0.73 8.12 16 30 H 0.06 1.32 7.42 -2.39 -0.02 1.30 16 31 H 0.11 1.18 7.89 -2.38 -0.02 1.16 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.88 6.36 -2.39 -0.02 0.87 16 34 H 0.10 0.76 7.89 -2.39 -0.02 0.74 16 35 H 0.40 9.43 6.33 -92.71 -0.59 8.84 16 36 H 0.05 2.22 7.57 -2.39 -0.02 2.21 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -70.81 351.26 -0.34 -71.14 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -1.13 Total: 28.78 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 6.66 Total: 26.09 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -7.83 Total: -149.09 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.81 -0.34 -71.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328960358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.893 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds