Wall clock time and date at job start Fri Apr 10 2020 17:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00146 * 2 1 4 4 C 1.52998 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47382 * 295.00116 * 4 3 2 6 6 C 1.53001 * 109.47065 * 175.00083 * 4 3 2 7 7 N 1.46495 * 109.47028 * 54.99973 * 4 3 2 8 8 C 1.34778 * 120.00011 * 204.99639 * 7 4 3 9 9 O 1.21584 * 119.99833 * 5.08876 * 8 7 4 10 10 N 1.34775 * 120.00087 * 185.08543 * 8 7 4 11 11 C 1.47079 * 120.88045 * 354.71680 * 10 8 7 12 12 C 1.53702 * 108.27710 * 128.75345 * 11 10 8 13 13 N 1.46899 * 109.25438 * 54.08373 * 12 11 10 14 14 C 1.46906 * 111.00042 * 172.60612 * 13 12 11 15 15 C 1.50696 * 109.47164 * 294.30398 * 14 13 12 16 16 H 1.08002 * 120.00280 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00113 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47192 * 60.00330 * 19 17 15 21 21 H 1.48500 * 109.47432 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47637 * 300.00181 * 19 17 15 23 23 C 1.46895 * 111.27012 * 296.75777 * 13 12 11 24 24 C 1.47076 * 120.88419 * 174.99347 * 10 8 7 25 25 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47157 * 299.99679 * 1 2 3 27 27 H 1.09005 * 109.47531 * 60.00002 * 1 2 3 28 28 H 1.00904 * 110.99983 * 236.04903 * 2 1 3 29 29 H 1.09003 * 109.46669 * 60.00116 * 3 2 1 30 30 H 1.08996 * 109.46986 * 300.00148 * 3 2 1 31 31 H 1.08998 * 109.47047 * 300.00238 * 6 4 3 32 32 H 1.09006 * 109.47171 * 60.00015 * 6 4 3 33 33 H 1.08998 * 109.47202 * 180.02562 * 6 4 3 34 34 H 0.97007 * 120.00278 * 25.00274 * 7 4 3 35 35 H 1.09008 * 109.63157 * 248.52168 * 11 10 8 36 36 H 1.09003 * 109.63249 * 9.10398 * 11 10 8 37 37 H 1.09001 * 109.65035 * 294.08013 * 12 11 10 38 38 H 1.08996 * 109.44201 * 173.95866 * 12 11 10 39 39 H 1.09000 * 109.46796 * 54.30029 * 14 13 12 40 40 H 1.08994 * 109.46819 * 174.29967 * 14 13 12 41 41 H 0.96998 * 120.00037 * 179.97438 * 18 17 15 42 42 H 1.09008 * 109.49345 * 303.14283 * 23 13 12 43 43 H 1.08998 * 109.49416 * 183.06597 * 23 13 12 44 44 H 1.09003 * 109.62827 * 350.89810 * 24 10 8 45 45 H 1.09000 * 109.62647 * 111.47534 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8769 0.8866 0.9305 6 6 4.0730 2.7535 -0.1263 7 7 3.9913 0.5258 -1.1324 8 6 5.1978 -0.0728 -1.0817 9 8 5.8591 -0.0224 -0.0627 10 7 5.6712 -0.7275 -2.1605 11 6 4.8417 -0.8999 -3.3628 12 6 5.6540 -0.4301 -4.5802 13 7 6.9405 -1.1387 -4.6069 14 6 7.6744 -0.8509 -5.8466 15 6 6.9194 -1.4189 -7.0206 16 1 5.9877 -1.9417 -6.8618 17 6 7.4179 -1.2711 -8.2976 18 7 8.5521 -0.6340 -8.4911 19 14 6.4824 -1.9757 -9.7528 20 1 5.1337 -1.3576 -9.8205 21 1 7.2241 -1.6847 -11.0060 22 1 6.3457 -3.4453 -9.5889 23 6 7.7526 -0.8135 -3.4268 24 6 7.0286 -1.2936 -2.1645 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8305 -0.5261 -0.7814 29 1 1.6459 1.8947 0.8900 30 1 1.6459 1.8948 -0.8899 31 1 3.7210 3.1975 -1.0575 32 1 3.7259 3.3523 0.7158 33 1 5.1626 2.7244 -0.1273 34 1 3.4320 0.4238 -1.9183 35 1 4.5783 -1.9514 -3.4783 36 1 3.9359 -0.3004 -3.2719 37 1 5.8312 0.6432 -4.5105 38 1 5.0994 -0.6486 -5.4926 39 1 7.7753 0.2277 -5.9669 40 1 8.6639 -1.3052 -5.7967 41 1 8.9030 -0.5303 -9.3894 42 1 7.9007 0.2652 -3.3731 43 1 8.7197 -1.3104 -3.5027 44 1 7.5693 -0.9546 -1.2809 45 1 6.9713 -2.3821 -2.1669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331404284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:38 Heat of formation + Delta-G solvation = -12.254848 kcal Electronic energy + Delta-G solvation = -23323.288951 eV Core-core repulsion = 19990.071604 eV Total energy + Delta-G solvation = -3333.217347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32229 -38.06883 -36.95149 -34.43371 -34.36326 -32.49274 -31.30349 -30.26007 -28.05555 -27.24317 -25.45710 -23.76729 -23.31769 -22.41271 -21.38647 -20.51560 -19.42650 -17.97675 -16.54874 -16.35725 -16.13092 -15.42018 -15.15220 -14.82642 -14.69092 -14.41161 -14.11478 -13.98871 -13.70248 -13.46854 -13.17015 -13.05827 -12.60491 -12.42873 -12.24569 -12.09289 -11.92587 -11.70815 -11.29989 -11.11209 -11.05411 -10.95532 -10.75512 -10.64123 -10.55424 -9.94131 -9.84388 -9.31309 -9.13910 -8.80837 -8.50242 -8.31487 -7.33105 -6.08181 -4.10494 2.73411 3.28697 3.33846 3.34356 3.35877 3.79695 3.98184 4.36635 4.57638 4.76767 4.85262 5.00679 5.11855 5.19312 5.23751 5.28140 5.33918 5.34611 5.39522 5.44736 5.52907 5.54891 5.65589 5.76345 5.82759 5.92782 6.04473 6.09372 6.29974 6.43294 6.45635 6.51683 6.60449 6.66669 6.97101 7.07411 7.21355 7.26919 7.71707 7.99842 8.03315 8.11937 8.45877 8.72426 8.96441 9.54022 11.02594 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003604 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.170453 B = 7766.536592 C = 8502.355241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.050 3.950 4 C 0.161 3.839 5 H 0.097 0.903 6 C -0.164 4.164 7 N -0.745 5.745 8 C 0.711 3.289 9 O -0.596 6.596 10 N -0.625 5.625 11 C 0.116 3.884 12 C 0.051 3.949 13 N -0.534 5.534 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.040 3.960 24 C 0.137 3.863 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.343 0.657 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.391 0.609 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.095 0.905 39 H -0.010 1.010 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 3.962 14.559 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.324 5.324 3 C -0.079 4.079 4 C 0.055 3.945 5 H 0.115 0.885 6 C -0.223 4.223 7 N -0.403 5.403 8 C 0.413 3.587 9 O -0.474 6.474 10 N -0.363 5.363 11 C -0.007 4.007 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C 0.014 3.986 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.162 0.838 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.113 0.887 39 H 0.008 0.992 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.008 3.498 15.854 20.804 hybrid contribution -0.732 0.821 -2.390 2.631 sum -13.740 4.319 13.464 19.716 Atomic orbital electron populations 1.22210 0.87601 1.02092 1.00385 1.60330 1.07733 1.13815 1.50564 1.22334 0.93960 0.90129 1.01518 1.20831 0.92021 0.90991 0.90654 0.88509 1.22189 1.02455 0.95829 1.01815 1.45315 1.19067 1.55090 1.20823 1.15777 0.81408 0.78178 0.83381 1.90876 1.59280 1.66865 1.30423 1.47389 1.16492 1.58315 1.14062 1.21935 0.92658 1.01534 0.84618 1.22391 0.92838 0.95194 0.97381 1.62065 1.03781 1.56969 1.03148 1.19720 0.93973 0.94727 0.84674 1.21099 1.07834 1.35565 0.90429 0.91873 1.24997 0.95126 0.95390 0.99051 1.69948 1.19586 1.42059 1.22092 0.86553 0.79667 0.79629 0.81493 1.20305 1.21358 1.20113 1.22441 0.97223 0.98275 0.90996 1.21617 0.80696 0.98004 0.98297 0.91291 0.91662 0.95978 0.83844 0.89475 0.94705 0.92619 0.91653 0.91636 0.77326 0.90598 0.91530 0.95783 0.88657 0.99168 0.94994 0.92792 0.95621 0.90039 0.89398 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.70 60.06 0.64 0.83 16 2 N -0.69 -6.01 6.85 -121.13 -0.83 -6.84 16 3 C 0.05 0.40 5.30 -3.82 -0.02 0.38 16 4 C 0.16 1.65 2.92 -67.93 -0.20 1.45 16 5 H 0.10 1.22 7.51 -51.93 -0.39 0.83 16 6 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 7 N -0.74 -8.58 4.27 -58.68 -0.25 -8.83 16 8 C 0.71 10.95 8.27 -86.92 -0.72 10.23 16 9 O -0.60 -11.16 15.45 5.29 0.08 -11.08 16 10 N -0.63 -9.51 3.00 -177.91 -0.53 -10.04 16 11 C 0.12 1.61 6.63 -3.36 -0.02 1.58 16 12 C 0.05 0.91 5.47 -3.46 -0.02 0.90 16 13 N -0.53 -10.98 4.62 -235.47 -1.09 -12.07 16 14 C 0.19 4.90 4.72 -4.97 -0.02 4.87 16 15 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 16 H 0.06 1.66 7.13 -52.49 -0.37 1.28 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.04 0.72 5.62 -3.71 -0.02 0.70 16 24 C 0.14 2.18 6.58 -3.61 -0.02 2.15 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.34 2.97 7.66 -39.29 -0.30 2.67 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.39 3.75 5.65 -40.82 -0.23 3.52 16 35 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.07 0.71 5.63 -51.93 -0.29 0.42 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 44 H 0.09 1.41 7.10 -51.93 -0.37 1.04 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -31.62 355.34 -9.75 -41.37 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.76 Total: 2.37 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.44 Total: 9.25 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -1.97 Total: -63.23 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.62 -9.75 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331404284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.111 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds