Wall clock time and date at job start Fri Apr 10 2020 17:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00146 * 2 1 4 4 C 1.52998 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47382 * 295.00116 * 4 3 2 6 6 C 1.53001 * 109.47065 * 175.00083 * 4 3 2 7 7 N 1.46495 * 109.47028 * 54.99973 * 4 3 2 8 8 C 1.34778 * 120.00011 * 204.99639 * 7 4 3 9 9 O 1.21584 * 119.99833 * 5.08876 * 8 7 4 10 10 N 1.34775 * 120.00087 * 185.08543 * 8 7 4 11 11 C 1.47079 * 120.88045 * 354.71680 * 10 8 7 12 12 C 1.53702 * 108.27710 * 128.75345 * 11 10 8 13 13 N 1.46899 * 109.25438 * 54.08373 * 12 11 10 14 14 C 1.46906 * 111.00042 * 172.60612 * 13 12 11 15 15 C 1.50696 * 109.47164 * 294.30398 * 14 13 12 16 16 H 1.08002 * 120.00280 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00113 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47192 * 60.00330 * 19 17 15 21 21 H 1.48500 * 109.47432 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47637 * 300.00181 * 19 17 15 23 23 C 1.46895 * 111.27012 * 296.75777 * 13 12 11 24 24 C 1.47076 * 120.88419 * 174.99347 * 10 8 7 25 25 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47157 * 299.99679 * 1 2 3 27 27 H 1.09005 * 109.47531 * 60.00002 * 1 2 3 28 28 H 1.00904 * 110.99983 * 236.04903 * 2 1 3 29 29 H 1.09003 * 109.46669 * 60.00116 * 3 2 1 30 30 H 1.08996 * 109.46986 * 300.00148 * 3 2 1 31 31 H 1.08998 * 109.47047 * 300.00238 * 6 4 3 32 32 H 1.09006 * 109.47171 * 60.00015 * 6 4 3 33 33 H 1.08998 * 109.47202 * 180.02562 * 6 4 3 34 34 H 0.97007 * 120.00278 * 25.00274 * 7 4 3 35 35 H 1.09008 * 109.63157 * 248.52168 * 11 10 8 36 36 H 1.09003 * 109.63249 * 9.10398 * 11 10 8 37 37 H 1.09001 * 109.65035 * 294.08013 * 12 11 10 38 38 H 1.08996 * 109.44201 * 173.95866 * 12 11 10 39 39 H 1.09000 * 109.46796 * 54.30029 * 14 13 12 40 40 H 1.08994 * 109.46819 * 174.29967 * 14 13 12 41 41 H 0.96998 * 120.00037 * 179.97438 * 18 17 15 42 42 H 1.09008 * 109.49345 * 303.14283 * 23 13 12 43 43 H 1.08998 * 109.49416 * 183.06597 * 23 13 12 44 44 H 1.09003 * 109.62827 * 350.89810 * 24 10 8 45 45 H 1.09000 * 109.62647 * 111.47534 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8769 0.8866 0.9305 6 6 4.0730 2.7535 -0.1263 7 7 3.9913 0.5258 -1.1324 8 6 5.1978 -0.0728 -1.0817 9 8 5.8591 -0.0224 -0.0627 10 7 5.6712 -0.7275 -2.1605 11 6 4.8417 -0.8999 -3.3628 12 6 5.6540 -0.4301 -4.5802 13 7 6.9405 -1.1387 -4.6069 14 6 7.6744 -0.8509 -5.8466 15 6 6.9194 -1.4189 -7.0206 16 1 5.9877 -1.9417 -6.8618 17 6 7.4179 -1.2711 -8.2976 18 7 8.5521 -0.6340 -8.4911 19 14 6.4824 -1.9757 -9.7528 20 1 5.1337 -1.3576 -9.8205 21 1 7.2241 -1.6847 -11.0060 22 1 6.3457 -3.4453 -9.5889 23 6 7.7526 -0.8135 -3.4268 24 6 7.0286 -1.2936 -2.1645 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8305 -0.5261 -0.7814 29 1 1.6459 1.8947 0.8900 30 1 1.6459 1.8948 -0.8899 31 1 3.7210 3.1975 -1.0575 32 1 3.7259 3.3523 0.7158 33 1 5.1626 2.7244 -0.1273 34 1 3.4320 0.4238 -1.9183 35 1 4.5783 -1.9514 -3.4783 36 1 3.9359 -0.3004 -3.2719 37 1 5.8312 0.6432 -4.5105 38 1 5.0994 -0.6486 -5.4926 39 1 7.7753 0.2277 -5.9669 40 1 8.6639 -1.3052 -5.7967 41 1 8.9030 -0.5303 -9.3894 42 1 7.9007 0.2652 -3.3731 43 1 8.7197 -1.3104 -3.5027 44 1 7.5693 -0.9546 -1.2809 45 1 6.9713 -2.3821 -2.1669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331404284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:37 Heat of formation + Delta-G solvation = -36.430936 kcal Electronic energy + Delta-G solvation = -23324.337305 eV Core-core repulsion = 19990.071604 eV Total energy + Delta-G solvation = -3334.265701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52059 -39.34415 -37.97448 -35.95165 -35.28237 -34.39305 -32.50551 -31.43839 -29.79298 -27.87839 -27.15087 -24.73489 -24.41997 -23.96872 -22.69768 -21.66807 -20.66694 -19.18058 -18.47957 -17.56031 -16.92332 -16.68786 -16.54211 -16.15476 -15.99241 -15.56388 -15.41482 -15.33047 -15.02749 -14.58305 -14.41239 -14.05211 -13.90772 -13.53255 -13.42411 -13.04332 -12.98695 -12.82723 -12.69985 -12.57138 -12.48722 -12.38795 -12.28770 -12.14571 -11.86950 -11.73720 -11.29556 -11.18098 -10.60336 -10.23756 -9.59650 -9.39304 -9.04100 -8.19391 -6.30068 1.44023 1.47248 1.54851 1.61087 2.13421 2.41765 2.84264 3.13093 3.23230 3.25313 3.85659 3.95124 4.05144 4.15135 4.18808 4.24380 4.32779 4.44638 4.49953 4.52739 4.61873 4.70093 4.74349 4.75155 4.77473 4.84963 4.94431 5.02329 5.02701 5.07598 5.19143 5.23803 5.25605 5.45031 5.58781 5.64156 5.93207 6.02340 6.03632 6.28466 6.37111 6.56089 6.85772 6.93750 7.40089 7.54512 8.91841 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003604 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.170453 B = 7766.536592 C = 8502.355241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.710 5.710 3 C 0.060 3.940 4 C 0.161 3.839 5 H 0.071 0.929 6 C -0.158 4.158 7 N -0.729 5.729 8 C 0.708 3.292 9 O -0.632 6.632 10 N -0.629 5.629 11 C 0.128 3.872 12 C 0.051 3.949 13 N -0.537 5.537 14 C 0.209 3.791 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.044 3.956 24 C 0.147 3.853 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.342 0.658 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.013 0.987 38 H 0.087 0.913 39 H -0.042 1.042 40 H 0.004 0.996 41 H 0.264 0.736 42 H 0.013 0.987 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 3.680 14.616 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.341 5.341 3 C -0.070 4.070 4 C 0.056 3.944 5 H 0.089 0.911 6 C -0.217 4.217 7 N -0.387 5.387 8 C 0.410 3.590 9 O -0.513 6.513 10 N -0.366 5.366 11 C 0.005 3.995 12 C -0.078 4.078 13 N -0.262 5.262 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.578 5.578 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.192 1.192 23 C -0.085 4.085 24 C 0.023 3.977 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.160 0.840 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.031 0.969 38 H 0.105 0.895 39 H -0.024 1.024 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.951 3.223 15.924 22.769 hybrid contribution 0.182 0.950 -2.342 2.534 sum -15.769 4.174 13.582 21.226 Atomic orbital electron populations 1.22232 0.86452 1.02508 1.00976 1.60342 1.08908 1.14134 1.50758 1.22265 0.91704 0.90237 1.02797 1.20905 0.93803 0.90721 0.88987 0.91056 1.22134 1.00438 0.95818 1.03351 1.45219 1.17773 1.54108 1.21612 1.15926 0.82164 0.78119 0.82798 1.90854 1.60585 1.68087 1.31806 1.47403 1.16323 1.58318 1.14511 1.21934 0.92766 1.02817 0.82002 1.22440 0.91745 0.94410 0.99193 1.62002 1.04643 1.57494 1.02045 1.19371 0.93262 0.92188 0.86942 1.21435 1.08108 1.35348 0.91112 0.91092 1.25952 0.95957 0.95616 1.02252 1.70095 1.21387 1.43499 1.22804 0.85406 0.78598 0.79083 0.77350 1.18809 1.21375 1.19247 1.22457 0.97490 0.97564 0.91034 1.21450 0.81156 0.98455 0.96643 0.91049 0.91264 0.95123 0.83994 0.88321 0.93194 0.91572 0.89521 0.94612 0.75922 0.89520 0.87723 0.96904 0.89504 1.02447 0.97796 0.92754 0.96884 0.90032 0.89487 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 127.69 1.37 1.67 16 2 N -0.71 -10.53 6.85 -537.15 -3.68 -14.21 16 3 C 0.06 0.78 5.30 86.30 0.46 1.24 16 4 C 0.16 3.04 2.92 44.99 0.13 3.17 16 5 H 0.07 1.76 7.51 -2.39 -0.02 1.74 16 6 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 7 N -0.73 -15.40 4.27 -457.83 -1.96 -17.36 16 8 C 0.71 21.03 8.27 179.05 1.48 22.52 16 9 O -0.63 -23.59 15.45 -3.98 -0.06 -23.66 16 10 N -0.63 -18.28 3.00 -835.03 -2.51 -20.79 16 11 C 0.13 3.24 6.63 86.51 0.57 3.81 16 12 C 0.05 1.79 5.47 86.54 0.47 2.26 16 13 N -0.54 -22.29 4.62 -898.88 -4.15 -26.44 16 14 C 0.21 10.90 4.72 85.55 0.40 11.30 16 15 C -0.52 -28.37 8.41 25.60 0.22 -28.15 16 16 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.94 -55.79 13.29 21.45 0.28 -55.50 16 19 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 C 0.04 1.60 5.62 86.38 0.49 2.09 16 24 C 0.15 4.58 6.58 86.35 0.57 5.15 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.34 5.01 7.66 -89.69 -0.69 4.32 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.40 6.50 5.65 -92.70 -0.52 5.98 16 35 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.10 1.86 5.63 -2.39 -0.01 1.84 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 3.19 6.67 -2.39 -0.02 3.18 16 39 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 40 H 0.00 0.22 7.97 -2.39 -0.02 0.20 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.08 2.93 7.99 -2.39 -0.02 2.92 16 44 H 0.09 2.78 7.10 -2.39 -0.02 2.76 16 45 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -69.75 355.34 -2.98 -72.73 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.24 Total: 17.09 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 7.30 Total: 23.41 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -12.01 Total: -134.29 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.66 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.75 -2.98 -72.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331404284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.295 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds