Wall clock time and date at job start Fri Apr 10 2020 17:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47458 * 2 1 4 4 N 1.46900 * 109.47261 * 239.99811 * 2 1 3 5 5 C 1.53003 * 109.47079 * 120.00264 * 2 1 3 6 6 C 1.52997 * 109.47080 * 185.00154 * 5 2 1 7 7 N 1.46502 * 109.47123 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99898 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00222 * 354.91984 * 8 7 6 10 10 N 1.34784 * 119.99741 * 174.91921 * 8 7 6 11 11 C 1.47080 * 120.87866 * 184.71627 * 10 8 7 12 12 C 1.53699 * 108.27545 * 128.75292 * 11 10 8 13 13 N 1.46899 * 109.25571 * 54.08186 * 12 11 10 14 14 C 1.46898 * 111.00364 * 172.60818 * 13 12 11 15 15 C 1.50707 * 109.46925 * 294.30550 * 14 13 12 16 16 H 1.08003 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00120 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00074 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00362 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46911 * 89.99508 * 19 17 15 21 21 H 1.48493 * 109.47565 * 210.00084 * 19 17 15 22 22 H 1.48501 * 109.46966 * 330.00158 * 19 17 15 23 23 C 1.46906 * 111.27063 * 296.75885 * 13 12 11 24 24 C 1.47075 * 120.88357 * 4.99450 * 10 8 7 25 25 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47145 * 300.00038 * 1 2 3 27 27 H 1.08997 * 109.46717 * 60.00073 * 1 2 3 28 28 H 1.00895 * 111.00427 * 60.00007 * 4 2 1 29 29 H 1.00900 * 111.00234 * 183.95581 * 4 2 1 30 30 H 1.09005 * 109.46857 * 304.99202 * 5 2 1 31 31 H 1.08995 * 109.47446 * 64.99565 * 5 2 1 32 32 H 1.09002 * 109.47380 * 299.99458 * 6 5 2 33 33 H 1.09004 * 109.47354 * 59.99685 * 6 5 2 34 34 H 0.96993 * 120.00271 * 359.97438 * 7 6 5 35 35 H 1.08997 * 109.62960 * 248.52161 * 11 10 8 36 36 H 1.08998 * 109.63245 * 9.10550 * 11 10 8 37 37 H 1.09003 * 109.64942 * 294.08259 * 12 11 10 38 38 H 1.09001 * 109.42323 * 173.94740 * 12 11 10 39 39 H 1.09000 * 109.46959 * 54.29607 * 14 13 12 40 40 H 1.08998 * 109.47464 * 174.30581 * 14 13 12 41 41 H 0.96995 * 120.00351 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.48700 * 303.14032 * 23 13 12 43 43 H 1.08996 * 109.49075 * 183.06614 * 23 13 12 44 44 H 1.09011 * 109.62707 * 350.89756 * 24 10 8 45 45 H 1.08994 * 109.63065 * 111.47487 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6133 1.3137 7 7 4.0531 -1.3035 2.5102 8 6 5.3740 -1.3396 2.7754 9 8 6.1673 -0.8807 1.9763 10 7 5.8156 -1.8844 3.9264 11 6 7.2418 -1.8423 4.2831 12 6 7.3658 -1.2815 5.7088 13 7 6.5225 -2.0721 6.6153 14 6 6.7444 -1.6830 8.0143 15 6 8.1516 -2.0411 8.4180 16 1 8.8145 -2.5111 7.7066 17 6 8.5927 -1.7688 9.6956 18 7 7.7857 -1.1959 10.5618 19 14 10.3366 -2.2133 10.1963 20 1 11.2408 -1.0712 9.9076 21 1 10.3721 -2.5178 11.6492 22 1 10.7833 -3.4042 9.4299 23 6 5.1024 -1.9590 6.2564 24 6 4.8849 -2.5421 4.8562 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6962 -0.2351 -2.0385 29 1 3.0262 -0.7626 -1.1909 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9995 -1.0729 0.4260 33 1 3.8532 0.4370 1.3574 34 1 3.4258 -1.7344 3.1115 35 1 7.6588 -2.8486 4.2447 36 1 7.7747 -1.1953 3.5862 37 1 7.0398 -0.2415 5.7232 38 1 8.4047 -1.3421 6.0330 39 1 6.5987 -0.6080 8.1199 40 1 6.0374 -2.2103 8.6547 41 1 8.0958 -1.0046 11.4607 42 1 4.8081 -0.9095 6.2633 43 1 4.4999 -2.5108 6.9779 44 1 3.8586 -2.3580 4.5382 45 1 5.0796 -3.6144 4.8717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333601571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:43 Heat of formation + Delta-G solvation = -23.019050 kcal Electronic energy + Delta-G solvation = -22736.631633 eV Core-core repulsion = 19402.947515 eV Total energy + Delta-G solvation = -3333.684118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22844 -37.96118 -37.21196 -34.61089 -34.31887 -32.39288 -30.88170 -30.04475 -29.14773 -27.90820 -25.49007 -23.84092 -22.93171 -22.09218 -20.94587 -20.57481 -19.17338 -17.90513 -16.66179 -16.48520 -16.30830 -15.68816 -15.45147 -14.92163 -14.54970 -14.35979 -14.13801 -14.12070 -13.78706 -13.68355 -13.45340 -12.82471 -12.57528 -12.29129 -12.18575 -11.99619 -11.76048 -11.50720 -11.34939 -11.29008 -11.13493 -10.83019 -10.74770 -10.62321 -10.51039 -9.99069 -9.85167 -9.27924 -9.17241 -9.06406 -8.49028 -8.31526 -7.33023 -6.06712 -4.08484 2.72448 3.30254 3.31590 3.36675 3.40890 3.90289 4.09827 4.38545 4.42799 4.57193 4.77754 4.81838 5.03051 5.12583 5.21339 5.27325 5.28524 5.36745 5.41717 5.43614 5.52994 5.65081 5.74841 5.78113 5.83404 5.87209 5.94866 6.04248 6.19127 6.41417 6.44966 6.55922 6.69334 6.75539 7.03597 7.06597 7.21366 7.27598 7.73943 7.99594 8.02199 8.12109 8.47149 8.68619 8.98898 9.56191 11.04139 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.041066 B = 0.002767 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.667448 B =10116.071026 C =10537.755791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.038 0.962 4 N -0.849 5.849 5 C -0.128 4.128 6 C 0.138 3.862 7 N -0.750 5.750 8 C 0.707 3.293 9 O -0.598 6.598 10 N -0.625 5.625 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.041 3.959 24 C 0.119 3.881 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.341 0.659 29 H 0.344 0.656 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.395 0.605 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.024 0.976 38 H 0.097 0.903 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 0.985 -18.321 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 H 0.056 0.944 4 N -0.381 5.381 5 C -0.166 4.166 6 C 0.013 3.987 7 N -0.408 5.408 8 C 0.408 3.592 9 O -0.477 6.477 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.089 4.089 24 C -0.005 4.005 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.115 0.885 39 H 0.009 0.991 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.417 0.295 -18.477 22.836 hybrid contribution 0.759 1.373 0.719 1.726 sum -12.657 1.668 -17.758 21.871 Atomic orbital electron populations 1.21810 0.94150 1.02679 1.01683 1.21228 0.95647 0.95102 0.90159 0.94393 1.58818 1.16755 1.58410 1.04123 1.21898 0.94385 1.02502 0.97829 1.21160 0.93218 0.96836 0.87472 1.45234 1.06201 1.61107 1.28299 1.15836 0.82377 0.78999 0.81961 1.90881 1.54520 1.54255 1.48030 1.47411 1.09604 1.59747 1.19456 1.21832 0.79122 1.01928 0.96094 1.22456 1.00402 0.94147 0.90836 1.62077 1.02616 1.55481 1.05848 1.19725 0.97748 0.94129 0.81493 1.21146 0.97233 1.39313 0.97063 0.91750 1.24995 0.97847 0.95265 0.96501 1.69955 1.35711 1.42738 1.05400 0.86487 0.84402 0.78840 0.77643 1.20712 1.21270 1.19709 1.22382 0.92742 0.98680 0.95109 1.21766 0.91560 0.97784 0.89407 0.91696 0.92071 0.92732 0.84691 0.84181 0.90753 0.90228 0.91624 0.92233 0.76820 0.91135 0.89400 0.95769 0.88481 0.99150 0.95062 0.92886 0.95576 0.90112 0.91287 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.49 37.16 0.35 -0.50 16 2 C 0.09 0.60 3.43 -67.71 -0.23 0.37 16 3 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 4 N -0.85 -5.74 9.25 -4.67 -0.04 -5.78 16 5 C -0.13 -0.93 5.00 -26.73 -0.13 -1.06 16 6 C 0.14 1.38 5.45 -4.04 -0.02 1.35 16 7 N -0.75 -8.79 5.47 -65.22 -0.36 -9.15 16 8 C 0.71 11.21 8.31 -86.91 -0.72 10.48 16 9 O -0.60 -11.52 15.83 5.29 0.08 -11.43 16 10 N -0.63 -9.73 3.00 -177.91 -0.53 -10.27 16 11 C 0.13 2.24 6.61 -3.36 -0.02 2.22 16 12 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 13 N -0.53 -11.08 4.62 -235.46 -1.09 -12.17 16 14 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 15 C -0.51 -13.95 8.41 -34.44 -0.29 -14.24 16 16 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 24 C 0.12 1.59 6.59 -3.61 -0.02 1.57 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.34 1.81 9.04 -39.29 -0.36 1.45 16 29 H 0.34 2.37 7.25 -39.29 -0.28 2.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.70 6.68 -51.93 -0.35 0.35 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 3.75 5.97 -40.82 -0.24 3.50 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 44 H 0.07 0.69 5.64 -51.92 -0.29 0.40 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.40 354.29 -9.79 -42.19 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.65 Total: 2.40 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.25 Total: 8.14 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -1.29 Total: -62.98 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.40 -9.79 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333601571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.171 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds