Wall clock time and date at job start Fri Apr 10 2020 17:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 N 1.46500 * 109.47073 * 239.99939 * 2 1 3 5 5 C 1.34778 * 120.00034 * 85.00227 * 4 2 1 6 6 O 1.21587 * 119.99899 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99851 * 179.97438 * 5 4 2 8 8 C 1.46507 * 119.99882 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47158 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99944 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00184 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00100 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46876 * 269.99903 * 13 11 9 15 15 H 1.48499 * 109.47343 * 149.99743 * 13 11 9 16 16 H 1.48501 * 109.47201 * 29.99689 * 13 11 9 17 17 C 1.53005 * 109.47073 * 119.99721 * 2 1 3 18 18 H 1.08992 * 109.48820 * 299.30380 * 17 2 1 19 19 C 1.53056 * 109.48640 * 59.36708 * 17 2 1 20 20 N 1.46951 * 109.36148 * 178.36692 * 19 17 2 21 21 C 1.46901 * 110.99709 * 176.80992 * 20 19 17 22 22 C 1.46962 * 110.88161 * 300.67703 * 20 19 17 23 23 C 1.53055 * 109.36011 * 59.32260 * 22 20 19 24 24 N 1.46951 * 109.36452 * 301.59754 * 23 22 20 25 25 C 1.46901 * 110.99709 * 183.19233 * 24 23 22 26 26 H 1.09000 * 109.47052 * 173.69649 * 1 2 3 27 27 H 1.09004 * 109.47373 * 293.69177 * 1 2 3 28 28 H 1.09003 * 109.47256 * 53.69323 * 1 2 3 29 29 H 0.96994 * 119.99846 * 264.99924 * 4 2 1 30 30 H 0.96993 * 120.00597 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.46909 * 59.99942 * 8 7 5 32 32 H 1.08996 * 109.47322 * 300.00530 * 8 7 5 33 33 H 0.96994 * 120.00473 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.48851 * 298.33383 * 19 17 2 35 35 H 1.08997 * 109.48773 * 58.39998 * 19 17 2 36 36 H 1.09001 * 109.46865 * 179.84466 * 21 20 19 37 37 H 1.08994 * 109.47097 * 299.84423 * 21 20 19 38 38 H 1.09003 * 109.47255 * 59.85019 * 21 20 19 39 39 H 1.09001 * 109.48997 * 299.35492 * 22 20 19 40 40 H 1.08996 * 109.48468 * 179.28570 * 22 20 19 41 41 H 1.09000 * 109.48515 * 181.63082 * 23 22 20 42 42 H 1.09000 * 109.50913 * 61.57998 * 23 22 20 43 43 H 1.09001 * 109.46890 * 290.39271 * 25 24 23 44 44 H 1.08994 * 109.47063 * 50.39255 * 25 24 23 45 45 H 1.08997 * 109.47235 * 170.39589 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4118 7 7 2.5968 -0.6535 -3.4574 8 6 2.7362 0.0772 -4.7195 9 6 3.2528 -0.8548 -5.7851 10 1 3.4565 -1.8882 -5.5463 11 6 3.4644 -0.3885 -7.0653 12 7 3.9157 -1.2017 -7.9951 13 14 3.1115 1.3987 -7.4786 14 1 1.7028 1.5337 -7.9289 15 1 4.0227 1.8453 -8.5628 16 1 3.3283 2.2378 -6.2728 17 6 2.0400 -0.7212 1.2493 18 1 1.6871 -0.2004 2.1394 19 6 1.5170 -2.1596 1.2577 20 7 2.0402 -2.8613 2.4382 21 6 1.4995 -4.2246 2.5227 22 6 3.5097 -2.8772 2.4296 23 6 4.0326 -1.4387 2.4211 24 7 3.5094 -0.7370 1.2407 25 6 4.0501 0.6262 1.1562 26 1 -0.3633 -1.0215 -0.1128 27 1 -0.3634 0.4129 0.9411 28 1 -0.3634 0.6085 -0.8282 29 1 2.2490 -1.6317 -1.1526 30 1 2.8281 -1.5944 -3.4137 31 1 3.4368 0.9017 -4.5866 32 1 1.7654 0.4705 -5.0209 33 1 4.0650 -0.8736 -8.8956 34 1 0.4276 -2.1503 1.2933 35 1 1.8473 -2.6719 0.3541 36 1 1.9049 -4.7223 3.4036 37 1 0.4130 -4.1805 2.5981 38 1 1.7794 -4.7826 1.6291 39 1 3.8626 -3.3977 1.5393 40 1 3.8729 -3.3909 3.3196 41 1 5.1219 -1.4481 2.3855 42 1 3.7027 -0.9262 3.3248 43 1 3.6302 1.2340 1.9577 44 1 5.1350 0.5935 1.2553 45 1 3.7862 1.0627 0.1929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345869888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:56 Heat of formation + Delta-G solvation = -12.771642 kcal Electronic energy + Delta-G solvation = -23692.165974 eV Core-core repulsion = 20358.926217 eV Total energy + Delta-G solvation = -3333.239757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30027 -38.87958 -36.15330 -34.98248 -34.03924 -32.37961 -31.31097 -29.77488 -28.86485 -27.47882 -25.56823 -24.75753 -23.13832 -22.30350 -21.09584 -20.40213 -19.32390 -18.24226 -16.52571 -16.26887 -15.93418 -15.71561 -15.14975 -14.84389 -14.79463 -14.61278 -14.25331 -14.12277 -13.76100 -13.34304 -13.00030 -12.82391 -12.68448 -12.56466 -12.27234 -12.20852 -12.02462 -11.90485 -11.74130 -11.53339 -11.39091 -10.97009 -10.91891 -10.71609 -10.41526 -9.91731 -9.49289 -9.38483 -8.75105 -8.69827 -8.66325 -8.46171 -7.90786 -6.16228 -4.17494 3.30435 3.34342 3.40651 3.47297 3.60262 3.68337 3.94531 4.38632 4.49657 4.63509 4.77272 4.92391 5.01793 5.06667 5.07479 5.19411 5.20746 5.23519 5.31118 5.35975 5.42701 5.44931 5.51248 5.57794 5.61359 5.66060 5.73191 5.80992 5.93283 6.05924 6.26057 6.64281 6.67016 6.82305 6.85710 6.91833 7.00712 7.18837 7.33670 7.50624 7.69805 8.35315 8.77527 8.90856 9.32822 9.47314 10.95899 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.003736 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.166769 B = 7492.223071 C = 7705.760722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.089 0.911 4 N -0.737 5.737 5 C 0.697 3.303 6 O -0.609 6.609 7 N -0.724 5.724 8 C 0.240 3.760 9 C -0.540 4.540 10 H 0.078 0.922 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.877 3.123 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.260 1.260 17 C 0.080 3.920 18 H 0.061 0.939 19 C 0.060 3.940 20 N -0.546 5.546 21 C 0.025 3.975 22 C 0.055 3.945 23 C 0.057 3.943 24 N -0.534 5.534 25 C 0.023 3.977 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.393 0.607 30 H 0.391 0.609 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -3.562 23.881 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.107 0.893 4 N -0.394 5.394 5 C 0.397 3.603 6 O -0.489 6.489 7 N -0.376 5.376 8 C 0.117 3.883 9 C -0.578 4.578 10 H 0.096 0.904 11 C -0.127 4.127 12 N -0.532 5.532 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.184 1.184 17 C -0.029 4.029 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.270 5.270 21 C -0.124 4.124 22 C -0.074 4.074 23 C -0.071 4.071 24 N -0.259 5.259 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.224 0.776 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.431 -2.477 23.592 23.968 hybrid contribution 0.124 -0.095 -0.335 0.370 sum -3.307 -2.572 23.256 23.631 Atomic orbital electron populations 1.22255 0.95440 1.02320 1.02378 1.20685 0.93348 0.97066 0.82638 0.89263 1.45040 1.72513 1.13430 1.08442 1.16107 0.78626 0.85147 0.80456 1.90842 1.58402 1.14702 1.84929 1.45362 1.68816 1.13779 1.09616 1.19315 0.96262 0.92811 0.79919 1.21115 1.45402 0.97903 0.93406 0.90367 1.24781 0.94087 0.97918 0.95865 1.69881 1.44905 1.35533 1.02916 0.86811 0.78677 0.85332 0.78831 1.19908 1.21004 1.18428 1.22016 0.87788 0.95881 0.97227 0.92088 1.22268 0.99868 0.93371 0.91358 1.62170 1.07544 1.16892 1.40430 1.22349 1.00659 0.88585 1.00763 1.22198 0.87343 0.96640 1.01188 1.22169 0.99579 0.93842 0.91535 1.62081 1.06543 1.17471 1.39787 1.22413 1.00024 0.88230 1.01806 0.92387 0.92069 0.91392 0.77293 0.77608 0.96042 0.96520 0.92344 0.89697 0.93734 0.91395 0.91285 0.95340 0.93702 0.90372 0.90155 0.94159 0.95629 0.91439 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.92 37.16 0.33 -1.57 16 2 C 0.17 2.15 1.86 -67.93 -0.13 2.03 16 3 H 0.09 1.32 5.97 -51.93 -0.31 1.01 16 4 N -0.74 -10.88 4.82 -58.68 -0.28 -11.16 16 5 C 0.70 13.89 8.53 -86.92 -0.74 13.15 16 6 O -0.61 -14.37 16.01 5.29 0.08 -14.28 16 7 N -0.72 -15.32 5.55 -66.41 -0.37 -15.69 16 8 C 0.24 6.09 4.50 -5.19 -0.02 6.06 16 9 C -0.54 -15.13 9.83 -34.44 -0.34 -15.47 16 10 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 13 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 17 C 0.08 0.84 1.82 -67.65 -0.12 0.72 16 18 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 19 C 0.06 0.57 4.35 -3.77 -0.02 0.56 16 20 N -0.55 -4.96 4.97 -242.75 -1.21 -6.17 16 21 C 0.02 0.18 9.60 60.07 0.58 0.76 16 22 C 0.05 0.47 5.62 -3.76 -0.02 0.45 16 23 C 0.06 0.52 5.61 -3.77 -0.02 0.50 16 24 N -0.53 -5.82 4.60 -234.73 -1.08 -6.90 16 25 C 0.02 0.26 8.99 60.07 0.54 0.79 16 26 H 0.06 0.61 6.81 -51.93 -0.35 0.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.39 5.16 6.90 -40.82 -0.28 4.88 16 30 H 0.39 7.41 8.33 -40.82 -0.34 7.07 16 31 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 0.76 6.66 -51.93 -0.35 0.42 16 35 H 0.04 0.46 6.49 -51.93 -0.34 0.13 16 36 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 41 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 45 H 0.08 1.06 6.61 -51.93 -0.34 0.72 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -32.48 349.40 -9.26 -41.74 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.72 Total: 6.06 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.06 Total: 10.10 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -2.16 Total: -66.06 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.48 -9.26 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345869888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.973 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds