Wall clock time and date at job start Fri Apr 10 2020 17:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 N 1.46500 * 109.47073 * 239.99939 * 2 1 3 5 5 C 1.34778 * 120.00034 * 85.00227 * 4 2 1 6 6 O 1.21587 * 119.99899 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99851 * 179.97438 * 5 4 2 8 8 C 1.46507 * 119.99882 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47158 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99944 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00184 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00100 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46876 * 269.99903 * 13 11 9 15 15 H 1.48499 * 109.47343 * 149.99743 * 13 11 9 16 16 H 1.48501 * 109.47201 * 29.99689 * 13 11 9 17 17 C 1.53005 * 109.47073 * 119.99721 * 2 1 3 18 18 H 1.08992 * 109.48820 * 299.30380 * 17 2 1 19 19 C 1.53056 * 109.48640 * 59.36708 * 17 2 1 20 20 N 1.46951 * 109.36148 * 178.36692 * 19 17 2 21 21 C 1.46901 * 110.99709 * 176.80992 * 20 19 17 22 22 C 1.46962 * 110.88161 * 300.67703 * 20 19 17 23 23 C 1.53055 * 109.36011 * 59.32260 * 22 20 19 24 24 N 1.46951 * 109.36452 * 301.59754 * 23 22 20 25 25 C 1.46901 * 110.99709 * 183.19233 * 24 23 22 26 26 H 1.09000 * 109.47052 * 173.69649 * 1 2 3 27 27 H 1.09004 * 109.47373 * 293.69177 * 1 2 3 28 28 H 1.09003 * 109.47256 * 53.69323 * 1 2 3 29 29 H 0.96994 * 119.99846 * 264.99924 * 4 2 1 30 30 H 0.96993 * 120.00597 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.46909 * 59.99942 * 8 7 5 32 32 H 1.08996 * 109.47322 * 300.00530 * 8 7 5 33 33 H 0.96994 * 120.00473 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.48851 * 298.33383 * 19 17 2 35 35 H 1.08997 * 109.48773 * 58.39998 * 19 17 2 36 36 H 1.09001 * 109.46865 * 179.84466 * 21 20 19 37 37 H 1.08994 * 109.47097 * 299.84423 * 21 20 19 38 38 H 1.09003 * 109.47255 * 59.85019 * 21 20 19 39 39 H 1.09001 * 109.48997 * 299.35492 * 22 20 19 40 40 H 1.08996 * 109.48468 * 179.28570 * 22 20 19 41 41 H 1.09000 * 109.48515 * 181.63082 * 23 22 20 42 42 H 1.09000 * 109.50913 * 61.57998 * 23 22 20 43 43 H 1.09001 * 109.46890 * 290.39271 * 25 24 23 44 44 H 1.08994 * 109.47063 * 50.39255 * 25 24 23 45 45 H 1.08997 * 109.47235 * 170.39589 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4118 7 7 2.5968 -0.6535 -3.4574 8 6 2.7362 0.0772 -4.7195 9 6 3.2528 -0.8548 -5.7851 10 1 3.4565 -1.8882 -5.5463 11 6 3.4644 -0.3885 -7.0653 12 7 3.9157 -1.2017 -7.9951 13 14 3.1115 1.3987 -7.4786 14 1 1.7028 1.5337 -7.9289 15 1 4.0227 1.8453 -8.5628 16 1 3.3283 2.2378 -6.2728 17 6 2.0400 -0.7212 1.2493 18 1 1.6871 -0.2004 2.1394 19 6 1.5170 -2.1596 1.2577 20 7 2.0402 -2.8613 2.4382 21 6 1.4995 -4.2246 2.5227 22 6 3.5097 -2.8772 2.4296 23 6 4.0326 -1.4387 2.4211 24 7 3.5094 -0.7370 1.2407 25 6 4.0501 0.6262 1.1562 26 1 -0.3633 -1.0215 -0.1128 27 1 -0.3634 0.4129 0.9411 28 1 -0.3634 0.6085 -0.8282 29 1 2.2490 -1.6317 -1.1526 30 1 2.8281 -1.5944 -3.4137 31 1 3.4368 0.9017 -4.5866 32 1 1.7654 0.4705 -5.0209 33 1 4.0650 -0.8736 -8.8956 34 1 0.4276 -2.1503 1.2933 35 1 1.8473 -2.6719 0.3541 36 1 1.9049 -4.7223 3.4036 37 1 0.4130 -4.1805 2.5981 38 1 1.7794 -4.7826 1.6291 39 1 3.8626 -3.3977 1.5393 40 1 3.8729 -3.3909 3.3196 41 1 5.1219 -1.4481 2.3855 42 1 3.7027 -0.9262 3.3248 43 1 3.6302 1.2340 1.9577 44 1 5.1350 0.5935 1.2553 45 1 3.7862 1.0627 0.1929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345869888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:56 Heat of formation + Delta-G solvation = -39.744760 kcal Electronic energy + Delta-G solvation = -23693.335616 eV Core-core repulsion = 20358.926217 eV Total energy + Delta-G solvation = -3334.409399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.195 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39905 -40.19407 -37.14456 -36.15226 -35.75178 -34.41566 -32.59246 -30.60139 -29.86638 -29.27254 -26.31069 -25.67106 -24.29719 -23.80513 -22.19519 -21.84473 -20.36440 -19.90503 -18.35353 -17.51422 -16.94892 -16.71154 -16.42102 -16.25289 -15.85333 -15.74188 -15.54591 -15.20513 -14.91389 -14.73632 -14.48408 -14.26856 -14.09387 -13.58717 -13.41416 -13.31179 -13.01388 -12.96411 -12.72929 -12.68201 -12.53146 -12.34779 -12.16669 -11.91367 -11.74634 -11.63427 -11.33071 -11.19007 -10.90139 -10.21772 -9.59199 -9.42244 -9.25532 -8.38446 -6.44977 1.34333 1.35930 1.49855 1.93092 2.29740 2.30996 2.84646 2.92419 2.97311 3.54015 3.63809 3.83952 4.01437 4.20286 4.21123 4.33415 4.36051 4.42658 4.50786 4.58194 4.64998 4.70633 4.75001 4.75761 4.80383 4.87982 4.92346 5.00293 5.04799 5.05756 5.06931 5.08208 5.27300 5.29588 5.59975 5.66927 5.92472 5.95327 6.01701 6.14132 6.15051 6.33195 6.57151 7.16793 7.31914 7.75411 8.76449 Molecular weight = 284.20amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.003736 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.166769 B = 7492.223071 C = 7705.760722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.068 0.932 4 N -0.715 5.715 5 C 0.698 3.302 6 O -0.645 6.645 7 N -0.725 5.725 8 C 0.254 3.746 9 C -0.545 4.545 10 H 0.057 0.943 11 C 0.027 3.973 12 N -0.932 5.932 13 Si 0.938 3.062 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.261 1.261 17 C 0.090 3.910 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.551 5.551 21 C 0.024 3.976 22 C 0.056 3.944 23 C 0.059 3.941 24 N -0.548 5.548 25 C 0.029 3.971 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.403 0.597 30 H 0.402 0.598 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.272 0.728 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -3.749 25.777 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.086 0.914 4 N -0.372 5.372 5 C 0.397 3.603 6 O -0.528 6.528 7 N -0.378 5.378 8 C 0.130 3.870 9 C -0.583 4.583 10 H 0.075 0.925 11 C -0.173 4.173 12 N -0.571 5.571 13 Si 0.762 3.238 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.019 4.019 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.275 5.275 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.069 4.069 24 N -0.274 5.274 25 C -0.119 4.119 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.240 0.760 30 H 0.236 0.764 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.963 -2.717 25.543 25.991 hybrid contribution 0.310 -0.119 -0.831 0.895 sum -3.654 -2.835 24.711 25.140 Atomic orbital electron populations 1.22190 0.94153 1.02816 1.02584 1.20847 0.94306 0.96145 0.82526 0.91389 1.44896 1.71084 1.13728 1.07443 1.16182 0.78200 0.84708 0.81165 1.90815 1.59901 1.16456 1.85624 1.45104 1.69522 1.14156 1.08991 1.18896 0.95061 0.92074 0.80978 1.21282 1.45209 0.97446 0.94341 0.92459 1.25576 0.93864 1.02050 0.95814 1.69978 1.46001 1.37550 1.03553 0.85847 0.79095 0.80186 0.78685 1.18939 1.19738 1.18571 1.21893 0.87758 0.96393 0.95841 0.91330 1.22234 1.00429 0.92537 0.91406 1.62201 1.07723 1.17832 1.39763 1.22403 1.01144 0.87666 1.01136 1.22226 0.87228 0.96263 1.01528 1.22208 1.00068 0.93879 0.90731 1.62079 1.06734 1.17405 1.41138 1.22303 1.00612 0.88537 1.00481 0.90977 0.89517 0.94242 0.76012 0.76372 0.97419 0.97420 0.91851 0.88666 0.94649 0.90216 0.90571 0.95704 0.94773 0.88632 0.89360 0.93842 0.94586 0.90634 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.92 71.98 0.64 -2.79 16 2 C 0.17 4.12 1.86 44.99 0.08 4.21 16 3 H 0.07 2.02 5.97 -2.39 -0.01 2.00 16 4 N -0.72 -20.73 4.82 -457.81 -2.21 -22.94 16 5 C 0.70 27.90 8.53 179.06 1.53 29.43 16 6 O -0.64 -30.85 16.01 -3.99 -0.06 -30.91 16 7 N -0.72 -30.82 5.55 -482.29 -2.68 -33.50 16 8 C 0.25 13.00 4.50 85.63 0.38 13.39 16 9 C -0.54 -30.88 9.83 25.60 0.25 -30.63 16 10 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 11 C 0.03 1.56 5.47 84.65 0.46 2.02 16 12 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 13 Si 0.94 45.00 27.47 68.60 1.88 46.88 16 14 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 17 C 0.09 1.74 1.82 44.93 0.08 1.82 16 18 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 19 C 0.06 1.06 4.35 86.31 0.38 1.43 16 20 N -0.55 -8.58 4.97 -921.93 -4.58 -13.16 16 21 C 0.02 0.30 9.60 127.69 1.23 1.52 16 22 C 0.06 0.83 5.62 86.31 0.49 1.32 16 23 C 0.06 0.95 5.61 86.31 0.48 1.43 16 24 N -0.55 -11.15 4.60 -896.56 -4.13 -15.28 16 25 C 0.03 0.61 8.99 127.69 1.15 1.76 16 26 H 0.07 1.35 6.81 -2.39 -0.02 1.34 16 27 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.40 10.19 6.90 -92.71 -0.64 9.55 16 30 H 0.40 15.24 8.33 -92.71 -0.77 14.46 16 31 H 0.01 0.43 7.20 -2.38 -0.02 0.41 16 32 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.10 1.43 6.66 -2.39 -0.02 1.41 16 35 H 0.04 0.67 6.49 -2.39 -0.02 0.65 16 36 H 0.08 0.79 8.13 -2.39 -0.02 0.78 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.11 8.13 -2.39 -0.02 1.09 16 41 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.04 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.07 1.45 8.03 -2.39 -0.02 1.43 16 45 H 0.05 1.33 6.61 -2.39 -0.02 1.31 16 Total: -1.00 -69.67 349.40 -4.80 -74.47 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.49 Total: 25.62 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 7.15 Total: 24.92 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -13.29 Total: -140.98 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.06 Total: -30.91 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -69.67 -4.80 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345869888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.726 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds