Wall clock time and date at job start Fri Apr 10 2020 17:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47345 * 2 1 4 4 C 1.36934 * 120.00083 * 264.56257 * 3 2 1 5 5 H 1.07993 * 120.00155 * 143.12222 * 4 3 2 6 6 C 1.38817 * 119.99553 * 323.11543 * 4 3 2 7 7 N 1.31616 * 120.00241 * 337.99833 * 6 4 3 8 8 Si 1.86798 * 119.99493 * 157.99988 * 6 4 3 9 9 H 1.48507 * 109.47390 * 90.00346 * 8 6 4 10 10 H 1.48511 * 109.46940 * 209.99853 * 8 6 4 11 11 H 1.48495 * 109.47441 * 329.99781 * 8 6 4 12 12 C 1.46498 * 119.99877 * 84.55441 * 3 2 1 13 13 C 1.53007 * 109.47052 * 90.00168 * 12 3 2 14 14 N 1.46494 * 109.47386 * 179.97438 * 13 12 3 15 15 C 1.34775 * 120.00337 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99649 * 0.27132 * 15 14 13 17 17 C 1.50699 * 120.00061 * 180.02562 * 15 14 13 18 18 H 1.09000 * 110.01939 * 335.45011 * 17 15 14 19 19 C 1.54263 * 110.02961 * 214.01248 * 17 15 14 20 20 C 1.54890 * 104.19688 * 217.10528 * 19 17 15 21 21 C 1.54885 * 102.75075 * 37.94452 * 20 19 17 22 22 C 1.53874 * 110.03316 * 96.84953 * 17 15 14 23 23 H 1.09002 * 110.02844 * 238.56881 * 22 17 15 24 24 O 1.42895 * 110.03475 * 359.97438 * 22 17 15 25 25 C 1.42902 * 114.00584 * 210.00305 * 24 22 17 26 26 H 1.08996 * 109.47708 * 300.00082 * 1 2 3 27 27 H 1.08999 * 109.47161 * 60.00342 * 1 2 3 28 28 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47328 * 239.99895 * 2 1 3 30 30 H 1.09007 * 109.47042 * 119.99931 * 2 1 3 31 31 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47558 * 330.00952 * 12 3 2 33 33 H 1.08998 * 109.47258 * 210.00370 * 12 3 2 34 34 H 1.09009 * 109.46527 * 59.99807 * 13 12 3 35 35 H 1.08998 * 109.47254 * 300.00204 * 13 12 3 36 36 H 0.97007 * 119.99886 * 0.02562 * 14 13 12 37 37 H 1.08999 * 110.48973 * 335.78675 * 19 17 15 38 38 H 1.09004 * 110.48751 * 98.42799 * 19 17 15 39 39 H 1.08994 * 110.75615 * 279.62610 * 20 19 17 40 40 H 1.09005 * 110.91251 * 156.33331 * 20 19 17 41 41 H 1.08994 * 110.48973 * 203.38396 * 21 20 19 42 42 H 1.09003 * 110.48647 * 80.72996 * 21 20 19 43 43 H 1.08993 * 109.47373 * 180.02562 * 25 24 22 44 44 H 1.09001 * 109.46562 * 299.99945 * 25 24 22 45 45 H 1.08999 * 109.46581 * 59.99849 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3525 1.9893 -1.1805 5 1 2.1401 3.0379 -1.3269 6 6 2.9645 1.2576 -2.1891 7 7 3.6088 0.1474 -1.8986 8 14 2.8734 1.8490 -3.9587 9 1 4.0284 2.7381 -4.2436 10 1 2.9112 0.6800 -4.8738 11 1 1.6086 2.5989 -4.1656 12 6 2.1490 2.1119 1.2630 13 6 3.5484 1.8876 1.8396 14 7 3.6794 2.6187 3.1022 15 6 4.8351 2.5680 3.7936 16 8 5.7684 1.9211 3.3680 17 6 4.9696 3.3197 5.0928 18 1 4.2701 4.1554 5.1146 19 6 6.4144 3.8343 5.2584 20 6 6.7007 3.6819 6.7730 21 6 5.9913 2.3502 7.1226 22 6 4.7006 2.3760 6.2781 23 1 3.8710 2.7541 6.8755 24 8 4.4014 1.0630 5.8003 25 6 3.5214 0.3223 6.6482 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 4.0361 -0.3640 -2.6034 32 1 1.4025 1.7510 1.9706 33 1 1.9959 3.1762 1.0845 34 1 4.2950 2.2485 1.1320 35 1 3.7016 0.8233 2.0180 36 1 2.9342 3.1394 3.4407 37 1 7.1056 3.2249 4.6763 38 1 6.4832 4.8807 4.9606 39 1 6.2663 4.5097 7.3334 40 1 7.7720 3.6100 6.9612 41 1 5.7513 2.3133 8.1852 42 1 6.6142 1.5010 6.8415 43 1 3.3443 -0.6627 6.2164 44 1 3.9746 0.2106 7.6332 45 1 2.5745 0.8539 6.7421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691028970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:14 Heat of formation + Delta-G solvation = -75.123618 kcal Electronic energy + Delta-G solvation = -23412.611883 eV Core-core repulsion = 20044.375591 eV Total energy + Delta-G solvation = -3368.236293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05518 -37.98800 -36.25253 -35.73624 -33.99310 -31.48749 -30.29622 -29.24535 -28.36942 -27.10185 -26.11470 -23.96249 -22.52635 -21.25979 -20.95724 -20.05472 -19.29509 -17.50641 -16.60622 -16.39762 -15.74133 -15.27076 -14.97628 -14.67212 -14.58895 -14.36410 -13.89791 -13.63272 -13.56198 -13.25379 -12.68941 -12.51723 -12.24738 -11.97428 -11.59598 -11.56723 -11.43899 -11.26046 -11.21863 -10.98229 -10.87838 -10.80527 -10.72726 -10.64071 -10.40507 -9.98090 -9.91147 -9.64911 -9.56751 -9.25699 -8.45362 -8.33558 -6.58406 -5.77738 -3.33362 3.14821 3.38238 3.45832 3.48208 3.59487 3.80628 4.35920 4.47081 4.51883 4.80494 5.01994 5.18702 5.21180 5.22489 5.32946 5.35065 5.37085 5.46439 5.49208 5.62024 5.65493 5.71906 5.85362 5.86098 6.04425 6.05659 6.15449 6.29699 6.30278 6.42487 6.54994 6.66090 6.86886 6.92997 6.99845 7.14063 7.22532 7.27360 7.73709 7.83949 8.09484 8.53450 8.83038 9.20793 9.82606 10.41048 11.24083 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.003835 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.617383 B = 7298.617260 C = 7996.905019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 N -0.579 5.579 4 C -0.267 4.267 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.141 3.859 13 C 0.102 3.898 14 N -0.725 5.725 15 C 0.530 3.470 16 O -0.535 6.535 17 C -0.115 4.115 18 H 0.093 0.907 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.145 4.145 22 C 0.098 3.902 23 H 0.068 0.932 24 O -0.369 6.369 25 C 0.032 3.968 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.255 0.745 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.390 0.610 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 5.711 19.235 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 N -0.299 5.299 4 C -0.396 4.396 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.013 3.987 13 C -0.023 4.023 14 N -0.376 5.376 15 C 0.315 3.685 16 O -0.412 6.412 17 C -0.137 4.137 18 H 0.111 0.889 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.183 4.183 22 C 0.039 3.961 23 H 0.086 0.914 24 O -0.287 6.287 25 C -0.065 4.065 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.309 5.010 18.591 19.257 hybrid contribution -0.534 0.494 -0.444 0.852 sum -0.225 5.504 18.147 18.965 Atomic orbital electron populations 1.22314 1.00822 0.98746 1.00394 1.20853 0.89689 0.86263 1.01444 1.43806 1.73597 1.11807 1.00725 1.19020 1.34077 0.95536 0.90997 0.92130 1.25198 0.96009 0.98060 0.99369 1.70043 1.33095 1.17442 1.31831 0.86416 0.78070 0.77897 0.85061 1.21215 1.21479 1.20317 1.21063 0.92092 0.96545 0.89000 1.22332 1.01414 0.95955 0.82601 1.46163 1.14736 1.51908 1.24778 1.19923 0.82804 0.81212 0.84597 1.90665 1.39078 1.42097 1.69330 1.22118 1.00068 0.97678 0.93794 0.88872 1.22361 0.94558 1.01382 0.96743 1.22401 1.00668 0.96786 0.95920 1.22890 0.97107 0.99267 0.99018 1.22686 0.96760 0.83499 0.93162 0.91386 1.88133 1.66554 1.26228 1.47822 1.22777 0.92459 0.96936 0.94328 0.94869 0.93216 0.94653 0.89055 0.96065 0.93467 0.94491 0.93618 0.91424 0.92473 0.77817 0.89240 0.91118 0.91450 0.91005 0.91527 0.90043 0.89608 0.94336 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.23 37.15 0.38 -2.90 16 2 C 0.14 3.42 5.95 -4.04 -0.02 3.40 16 3 N -0.58 -14.40 2.43 -173.24 -0.42 -14.82 16 4 C -0.27 -7.29 9.46 -15.06 -0.14 -7.43 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.41 4.89 -17.43 -0.09 0.32 16 7 N -0.88 -25.84 11.54 55.49 0.64 -25.20 16 8 Si 0.90 21.68 29.61 -169.99 -5.03 16.65 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.14 2.91 5.80 -4.04 -0.02 2.89 16 13 C 0.10 2.18 6.00 -4.04 -0.02 2.16 16 14 N -0.73 -12.20 5.56 -60.29 -0.33 -12.53 16 15 C 0.53 9.26 5.54 -10.99 -0.06 9.20 16 16 O -0.54 -11.99 15.80 4.73 0.07 -11.91 16 17 C -0.11 -1.41 3.29 -90.66 -0.30 -1.71 16 18 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 19 C -0.11 -1.30 6.32 -25.07 -0.16 -1.45 16 20 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 21 C -0.15 -1.44 6.56 -25.07 -0.16 -1.60 16 22 C 0.10 1.10 3.35 -25.61 -0.09 1.01 16 23 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 24 O -0.37 -5.26 8.81 -36.06 -0.32 -5.58 16 25 C 0.03 0.33 10.85 101.05 1.10 1.43 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.47 5.57 -51.93 -0.29 2.18 16 30 H 0.02 0.49 8.11 -51.92 -0.42 0.07 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 34 H 0.07 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.39 5.14 8.46 -40.82 -0.35 4.79 16 37 H 0.09 1.30 6.93 -51.93 -0.36 0.94 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.04 0.36 8.10 -51.93 -0.42 -0.06 16 LS Contribution 363.31 15.07 5.47 5.47 Total: -1.00 -33.19 363.31 -7.80 -40.99 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.12 Total: 2.87 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.24 Total: 4.07 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.12 Total: -52.56 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.24 Total: -17.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.19 -7.80 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691028970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.136 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds