Wall clock time and date at job start Fri Apr 10 2020 17:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47345 * 2 1 4 4 C 1.36934 * 120.00083 * 264.56257 * 3 2 1 5 5 H 1.07993 * 120.00155 * 143.12222 * 4 3 2 6 6 C 1.38817 * 119.99553 * 323.11543 * 4 3 2 7 7 N 1.31616 * 120.00241 * 337.99833 * 6 4 3 8 8 Si 1.86798 * 119.99493 * 157.99988 * 6 4 3 9 9 H 1.48507 * 109.47390 * 90.00346 * 8 6 4 10 10 H 1.48511 * 109.46940 * 209.99853 * 8 6 4 11 11 H 1.48495 * 109.47441 * 329.99781 * 8 6 4 12 12 C 1.46498 * 119.99877 * 84.55441 * 3 2 1 13 13 C 1.53007 * 109.47052 * 90.00168 * 12 3 2 14 14 N 1.46494 * 109.47386 * 179.97438 * 13 12 3 15 15 C 1.34775 * 120.00337 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99649 * 0.27132 * 15 14 13 17 17 C 1.50699 * 120.00061 * 180.02562 * 15 14 13 18 18 H 1.09000 * 110.01939 * 335.45011 * 17 15 14 19 19 C 1.54263 * 110.02961 * 214.01248 * 17 15 14 20 20 C 1.54890 * 104.19688 * 217.10528 * 19 17 15 21 21 C 1.54885 * 102.75075 * 37.94452 * 20 19 17 22 22 C 1.53874 * 110.03316 * 96.84953 * 17 15 14 23 23 H 1.09002 * 110.02844 * 238.56881 * 22 17 15 24 24 O 1.42895 * 110.03475 * 359.97438 * 22 17 15 25 25 C 1.42902 * 114.00584 * 210.00305 * 24 22 17 26 26 H 1.08996 * 109.47708 * 300.00082 * 1 2 3 27 27 H 1.08999 * 109.47161 * 60.00342 * 1 2 3 28 28 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47328 * 239.99895 * 2 1 3 30 30 H 1.09007 * 109.47042 * 119.99931 * 2 1 3 31 31 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47558 * 330.00952 * 12 3 2 33 33 H 1.08998 * 109.47258 * 210.00370 * 12 3 2 34 34 H 1.09009 * 109.46527 * 59.99807 * 13 12 3 35 35 H 1.08998 * 109.47254 * 300.00204 * 13 12 3 36 36 H 0.97007 * 119.99886 * 0.02562 * 14 13 12 37 37 H 1.08999 * 110.48973 * 335.78675 * 19 17 15 38 38 H 1.09004 * 110.48751 * 98.42799 * 19 17 15 39 39 H 1.08994 * 110.75615 * 279.62610 * 20 19 17 40 40 H 1.09005 * 110.91251 * 156.33331 * 20 19 17 41 41 H 1.08994 * 110.48973 * 203.38396 * 21 20 19 42 42 H 1.09003 * 110.48647 * 80.72996 * 21 20 19 43 43 H 1.08993 * 109.47373 * 180.02562 * 25 24 22 44 44 H 1.09001 * 109.46562 * 299.99945 * 25 24 22 45 45 H 1.08999 * 109.46581 * 59.99849 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3525 1.9893 -1.1805 5 1 2.1401 3.0379 -1.3269 6 6 2.9645 1.2576 -2.1891 7 7 3.6088 0.1474 -1.8986 8 14 2.8734 1.8490 -3.9587 9 1 4.0284 2.7381 -4.2436 10 1 2.9112 0.6800 -4.8738 11 1 1.6086 2.5989 -4.1656 12 6 2.1490 2.1119 1.2630 13 6 3.5484 1.8876 1.8396 14 7 3.6794 2.6187 3.1022 15 6 4.8351 2.5680 3.7936 16 8 5.7684 1.9211 3.3680 17 6 4.9696 3.3197 5.0928 18 1 4.2701 4.1554 5.1146 19 6 6.4144 3.8343 5.2584 20 6 6.7007 3.6819 6.7730 21 6 5.9913 2.3502 7.1226 22 6 4.7006 2.3760 6.2781 23 1 3.8710 2.7541 6.8755 24 8 4.4014 1.0630 5.8003 25 6 3.5214 0.3223 6.6482 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 4.0361 -0.3640 -2.6034 32 1 1.4025 1.7510 1.9706 33 1 1.9959 3.1762 1.0845 34 1 4.2950 2.2485 1.1320 35 1 3.7016 0.8233 2.0180 36 1 2.9342 3.1394 3.4407 37 1 7.1056 3.2249 4.6763 38 1 6.4832 4.8807 4.9606 39 1 6.2663 4.5097 7.3334 40 1 7.7720 3.6100 6.9612 41 1 5.7513 2.3133 8.1852 42 1 6.6142 1.5010 6.8415 43 1 3.3443 -0.6627 6.2164 44 1 3.9746 0.2106 7.6332 45 1 2.5745 0.8539 6.7421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691028970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:13 Heat of formation + Delta-G solvation = -97.992780 kcal Electronic energy + Delta-G solvation = -23413.603565 eV Core-core repulsion = 20044.375591 eV Total energy + Delta-G solvation = -3369.227974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23084 -39.19129 -38.02125 -36.73403 -35.66297 -33.51331 -31.85930 -30.50211 -29.19335 -28.78241 -26.98368 -25.87466 -24.15545 -22.60538 -21.88066 -21.73400 -20.56866 -18.75339 -18.43254 -17.44143 -17.09496 -16.67851 -16.36723 -16.23931 -15.96150 -15.52484 -15.48025 -15.10853 -14.72836 -14.51065 -14.35718 -13.99494 -13.80531 -13.38100 -13.21315 -12.81305 -12.65142 -12.54243 -12.43071 -12.40574 -12.29443 -12.23326 -11.98190 -11.96171 -11.76267 -11.71697 -11.49572 -11.45037 -10.73149 -10.53261 -10.50016 -9.96520 -8.62578 -7.86550 -5.46494 1.45411 1.47283 1.57431 1.79704 2.28758 2.52861 2.87678 3.23832 3.52968 3.62396 3.72869 3.94266 4.22505 4.27536 4.31105 4.39959 4.42075 4.43695 4.49715 4.54907 4.57450 4.62014 4.69606 4.75602 4.87520 4.91246 4.94091 4.99491 5.05572 5.10175 5.16970 5.17441 5.20407 5.26245 5.45579 5.49649 5.61056 5.67575 5.82926 6.34082 6.44467 6.75108 7.14695 7.47010 7.83051 8.35527 9.12387 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.003835 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.617383 B = 7298.617260 C = 7996.905019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 N -0.596 5.596 4 C -0.273 4.273 5 H 0.063 0.937 6 C -0.038 4.038 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.265 1.265 12 C 0.146 3.854 13 C 0.127 3.873 14 N -0.711 5.711 15 C 0.524 3.476 16 O -0.595 6.595 17 C -0.110 4.110 18 H 0.134 0.866 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.145 4.145 22 C 0.092 3.908 23 H 0.106 0.894 24 O -0.412 6.412 25 C 0.027 3.973 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.251 0.749 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.412 0.588 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 7.917 21.574 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 N -0.317 5.317 4 C -0.403 4.403 5 H 0.081 0.919 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.190 1.190 12 C 0.019 3.981 13 C -0.001 4.001 14 N -0.364 5.364 15 C 0.312 3.688 16 O -0.475 6.475 17 C -0.131 4.131 18 H 0.152 0.848 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.182 4.182 22 C 0.034 3.966 23 H 0.124 0.876 24 O -0.332 6.332 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.249 0.751 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.766 7.256 20.973 22.262 hybrid contribution 0.124 -0.202 -1.097 1.122 sum -1.642 7.054 19.876 21.154 Atomic orbital electron populations 1.22099 0.97335 1.00427 1.00778 1.20798 0.92350 0.85692 0.99594 1.44058 1.73887 1.12170 1.01581 1.19326 1.33088 0.95706 0.92194 0.91945 1.25941 0.96088 0.98414 1.03069 1.70196 1.34612 1.18952 1.32572 0.85420 0.78260 0.77189 0.80398 1.21292 1.21794 1.18997 1.21144 0.91942 0.97032 0.87974 1.21726 1.00622 0.93962 0.83746 1.45920 1.15817 1.51476 1.23137 1.20964 0.81611 0.80398 0.85848 1.90642 1.41095 1.44704 1.71082 1.22299 1.01595 0.98523 0.90689 0.84837 1.22390 0.93229 1.01515 0.98444 1.22403 1.01184 0.97266 0.93845 1.22896 0.96223 0.98668 1.00439 1.22972 0.98580 0.82220 0.92811 0.87629 1.88093 1.67566 1.27892 1.49648 1.22906 0.92987 0.96399 0.94558 0.92813 0.94319 0.92372 0.92533 0.96446 0.94026 0.91424 0.92099 0.96164 0.96170 0.75111 0.93436 0.89268 0.88212 0.90679 0.88653 0.93099 0.90739 0.92455 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 10.23 71.98 0.74 -4.92 16 2 C 0.14 6.82 5.95 86.38 0.51 7.33 16 3 N -0.60 -29.83 2.43 -702.00 -1.71 -31.53 16 4 C -0.27 -15.05 9.46 84.03 0.79 -14.26 16 5 H 0.06 3.37 7.92 -2.91 -0.02 3.34 16 6 C -0.04 -2.13 4.89 84.86 0.41 -1.72 16 7 N -0.92 -55.98 11.54 21.65 0.25 -55.73 16 8 Si 0.96 45.32 29.61 68.60 2.03 47.35 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.15 5.93 5.80 86.38 0.50 6.43 16 13 C 0.13 5.58 6.00 86.38 0.52 6.09 16 14 N -0.71 -23.62 5.56 -463.06 -2.57 -26.19 16 15 C 0.52 18.49 5.54 87.66 0.49 18.97 16 16 O -0.60 -28.28 15.80 -2.23 -0.04 -28.32 16 17 C -0.11 -2.47 3.29 -10.82 -0.04 -2.50 16 18 H 0.13 1.91 8.12 -2.39 -0.02 1.89 16 19 C -0.12 -2.56 6.32 31.67 0.20 -2.36 16 20 C -0.11 -1.64 6.91 31.88 0.22 -1.42 16 21 C -0.14 -2.53 6.56 31.67 0.21 -2.32 16 22 C 0.09 1.82 3.35 31.32 0.11 1.93 16 23 H 0.11 1.31 7.80 -2.39 -0.02 1.29 16 24 O -0.41 -11.44 8.81 -148.18 -1.31 -12.74 16 25 C 0.03 0.53 10.85 113.37 1.23 1.76 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 3.15 5.57 -2.39 -0.01 3.14 16 30 H 0.02 0.82 8.11 -2.38 -0.02 0.80 16 31 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.41 9.83 8.46 -92.70 -0.78 9.05 16 37 H 0.05 1.44 6.93 -2.39 -0.02 1.43 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -77.96 363.31 2.72 -75.24 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.17 Total: 18.93 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.89 Total: 13.00 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -4.03 Total: -113.45 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.34 Total: -41.06 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.96 2.72 -75.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691028970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -77.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds