Wall clock time and date at job start Fri Apr 10 2020 17:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46857 * 2 1 4 4 C 1.36935 * 120.00109 * 95.56178 * 3 2 1 5 5 H 1.08000 * 120.00470 * 219.05794 * 4 3 2 6 6 C 1.38813 * 120.00053 * 39.05152 * 4 3 2 7 7 N 1.31620 * 119.99837 * 26.12977 * 6 4 3 8 8 Si 1.86796 * 120.00237 * 206.12797 * 6 4 3 9 9 H 1.48499 * 109.47100 * 60.00021 * 8 6 4 10 10 H 1.48502 * 109.47224 * 300.00179 * 8 6 4 11 11 H 1.48502 * 109.47319 * 180.02562 * 8 6 4 12 12 C 1.46501 * 120.00447 * 275.55628 * 3 2 1 13 13 C 1.53005 * 109.47308 * 270.00748 * 12 3 2 14 14 N 1.46497 * 109.47090 * 179.97438 * 13 12 3 15 15 C 1.34772 * 120.00113 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00097 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00358 * 180.02562 * 15 14 13 18 18 H 1.09005 * 110.01292 * 300.06341 * 17 15 14 19 19 C 1.53877 * 110.03222 * 61.44830 * 17 15 14 20 20 C 1.54266 * 106.59471 * 119.28760 * 19 17 15 21 21 C 1.54889 * 104.19864 * 23.61135 * 20 19 17 22 22 C 1.54257 * 110.03249 * 178.62070 * 17 15 14 23 23 H 1.09002 * 110.48893 * 335.77972 * 22 17 15 24 24 O 1.42901 * 110.48918 * 98.42662 * 22 17 15 25 25 C 1.42897 * 114.00159 * 209.99902 * 24 22 17 26 26 H 1.08992 * 109.47567 * 59.99539 * 1 2 3 27 27 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46625 * 299.99531 * 1 2 3 29 29 H 1.09000 * 109.47218 * 240.00446 * 2 1 3 30 30 H 1.09000 * 109.47399 * 120.00200 * 2 1 3 31 31 H 0.96999 * 120.00030 * 5.37459 * 7 6 4 32 32 H 1.09007 * 109.46523 * 29.99855 * 12 3 2 33 33 H 1.08997 * 109.47607 * 149.99609 * 12 3 2 34 34 H 1.08999 * 109.46390 * 299.99333 * 13 12 3 35 35 H 1.08994 * 109.47263 * 59.99753 * 13 12 3 36 36 H 0.97003 * 120.00351 * 359.97438 * 14 13 12 37 37 H 1.08992 * 110.03659 * 238.57414 * 19 17 15 38 38 H 1.09004 * 110.03214 * 0.02562 * 19 17 15 39 39 H 1.09000 * 110.48711 * 142.29150 * 20 19 17 40 40 H 1.09004 * 110.48811 * 264.79935 * 20 19 17 41 41 H 1.09001 * 110.75343 * 80.36649 * 21 20 19 42 42 H 1.08996 * 110.75998 * 203.56015 * 21 20 19 43 43 H 1.08996 * 109.47198 * 59.99543 * 25 24 22 44 44 H 1.08998 * 109.47349 * 180.02562 * 25 24 22 45 45 H 1.09004 * 109.46812 * 299.99785 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3548 1.9885 1.1803 5 1 2.1110 3.0282 1.3415 6 6 3.0093 1.2677 2.1697 7 7 3.7504 0.2292 1.8462 8 14 2.8384 1.7716 3.9603 9 1 1.4089 1.7098 4.3576 10 1 3.3410 3.1581 4.1345 11 1 3.6298 0.8480 4.8122 12 6 2.1466 2.1129 -1.2627 13 6 3.5449 1.8890 -1.8421 14 7 3.6730 2.6201 -3.1051 15 6 4.8273 2.5697 -3.7988 16 8 5.7603 1.9195 -3.3773 17 6 4.9594 3.3224 -5.0978 18 1 4.2144 2.9692 -5.8110 19 6 4.7813 4.8311 -4.8533 20 6 6.0971 5.5068 -5.2915 21 6 6.7185 4.5095 -6.3007 22 6 6.3770 3.1338 -5.6760 23 1 7.0833 2.8893 -4.8826 24 8 6.3770 2.1156 -6.6786 25 6 7.6124 1.4056 -6.7861 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9027 0.0140 0.9128 32 1 1.3987 1.7524 -1.9691 33 1 1.9937 3.1771 -1.0833 34 1 4.2927 2.2494 -1.1358 35 1 3.6977 0.8248 -2.0217 36 1 2.9270 3.1406 -3.4421 37 1 3.9506 5.2104 -5.4484 38 1 4.5998 5.0190 -3.7950 39 1 5.8927 6.4618 -5.7756 40 1 6.7572 5.6476 -4.4356 41 1 6.2554 4.6139 -7.2819 42 1 7.7974 4.6494 -6.3675 43 1 7.8371 0.9214 -5.8358 44 1 7.5311 0.6512 -7.5686 45 1 8.4117 2.1033 -7.0363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691028972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:19 Heat of formation + Delta-G solvation = -83.008494 kcal Electronic energy + Delta-G solvation = -23168.319394 eV Core-core repulsion = 19799.741187 eV Total energy + Delta-G solvation = -3368.578207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18859 -38.14675 -36.49279 -35.94472 -34.31714 -31.52343 -30.49418 -29.31710 -28.42083 -26.98706 -26.12889 -23.83226 -22.69447 -21.50089 -20.92832 -20.18293 -19.48566 -17.59319 -17.13294 -16.68551 -15.84743 -15.36610 -15.01018 -14.79983 -14.62830 -14.15919 -14.09221 -13.67154 -13.60968 -13.42656 -12.89102 -12.78051 -12.56066 -12.30817 -12.02594 -11.57758 -11.45542 -11.35288 -11.25146 -10.97143 -10.90623 -10.80677 -10.72514 -10.71795 -10.46295 -10.06025 -9.98644 -9.63989 -9.51359 -9.32746 -8.62794 -8.37205 -6.86418 -6.08053 -3.42498 2.89478 3.35133 3.48263 3.51402 3.69508 3.76641 4.26293 4.43407 4.58020 4.73503 5.05176 5.11946 5.20086 5.25813 5.26218 5.30854 5.36422 5.43058 5.46525 5.51599 5.62070 5.65654 5.79321 5.82920 5.85965 5.91021 5.95566 6.06642 6.08549 6.22943 6.37542 6.45573 6.63737 6.69368 6.73776 6.95163 7.05289 7.13013 7.29039 7.81813 8.09601 8.51556 8.57301 9.09393 9.78012 10.24117 11.12846 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.003497 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.999221 B = 8004.712253 C = 8180.573459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 N -0.587 5.587 4 C -0.362 4.362 5 H 0.050 0.950 6 C -0.013 4.013 7 N -0.898 5.898 8 Si 1.063 2.937 9 H -0.291 1.291 10 H -0.291 1.291 11 H -0.285 1.285 12 C 0.140 3.860 13 C 0.098 3.902 14 N -0.723 5.723 15 C 0.514 3.486 16 O -0.543 6.543 17 C -0.114 4.114 18 H 0.108 0.892 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.144 4.144 22 C 0.096 3.904 23 H 0.088 0.912 24 O -0.383 6.383 25 C 0.033 3.967 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.076 0.924 31 H 0.271 0.729 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 7.892 -16.700 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.309 5.309 4 C -0.491 4.491 5 H 0.068 0.932 6 C -0.218 4.218 7 N -0.535 5.535 8 Si 0.892 3.108 9 H -0.219 1.219 10 H -0.218 1.218 11 H -0.211 1.211 12 C 0.013 3.987 13 C -0.028 4.028 14 N -0.374 5.374 15 C 0.299 3.701 16 O -0.420 6.420 17 C -0.136 4.136 18 H 0.126 0.874 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.182 4.182 22 C 0.037 3.963 23 H 0.106 0.894 24 O -0.301 6.301 25 C -0.064 4.064 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.935 6.935 -14.885 16.681 hybrid contribution -0.503 0.677 -1.659 1.861 sum 2.433 7.612 -16.543 18.372 Atomic orbital electron populations 1.22240 0.99861 0.99086 1.00820 1.20910 0.91278 0.86571 1.00328 1.43865 1.73994 1.11788 1.01281 1.19802 1.37476 0.98227 0.93603 0.93195 1.26015 0.92963 0.97793 1.05010 1.70774 1.31451 1.30070 1.21249 0.83565 0.76041 0.75462 0.75685 1.21856 1.21831 1.21057 1.21094 0.91787 0.96946 0.88892 1.22404 1.01875 0.95691 0.82813 1.46149 1.14887 1.51747 1.24605 1.20430 0.82812 0.81301 0.85531 1.90685 1.38867 1.42497 1.69956 1.21993 0.99517 0.96465 0.95624 0.87398 1.22105 0.98759 0.91869 1.02557 1.22263 0.96498 0.98218 0.98991 1.22961 1.00932 0.94715 0.99551 1.22909 0.95959 0.87093 0.90292 0.89403 1.87836 1.35149 1.50307 1.56829 1.22760 0.86102 0.95796 1.01711 0.94535 0.94391 0.92844 0.95697 0.90562 0.91875 0.94328 0.93294 0.91318 0.92658 0.77197 0.90459 0.90670 0.90950 0.91166 0.90441 0.91258 0.93472 0.89889 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.23 37.16 0.38 -2.78 16 2 C 0.13 3.11 5.48 -4.04 -0.02 3.09 16 3 N -0.59 -14.30 2.17 -173.23 -0.38 -14.67 16 4 C -0.36 -9.87 9.36 -15.06 -0.14 -10.01 16 5 H 0.05 1.38 7.95 -52.49 -0.42 0.97 16 6 C -0.01 -0.36 4.74 -17.43 -0.08 -0.45 16 7 N -0.90 -26.72 12.35 55.49 0.69 -26.03 16 8 Si 1.06 25.00 29.99 -169.99 -5.10 19.90 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 C 0.14 2.82 5.80 -4.04 -0.02 2.80 16 13 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 14 N -0.72 -11.41 5.40 -60.29 -0.33 -11.74 16 15 C 0.51 8.52 6.93 -10.98 -0.08 8.45 16 16 O -0.54 -11.43 15.41 5.56 0.09 -11.35 16 17 C -0.11 -1.41 3.06 -90.65 -0.28 -1.69 16 18 H 0.11 1.23 8.07 -51.93 -0.42 0.81 16 19 C -0.11 -1.11 6.36 -25.61 -0.16 -1.28 16 20 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 21 C -0.14 -1.38 6.62 -24.73 -0.16 -1.54 16 22 C 0.10 1.21 2.66 -25.07 -0.07 1.14 16 23 H 0.09 1.29 6.57 -51.93 -0.34 0.95 16 24 O -0.38 -5.09 10.41 -35.23 -0.37 -5.46 16 25 C 0.03 0.35 10.85 101.05 1.10 1.45 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 29 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.08 1.99 5.83 -51.93 -0.30 1.69 16 31 H 0.27 8.19 7.40 -40.82 -0.30 7.89 16 32 H 0.04 0.69 8.07 -51.93 -0.42 0.28 16 33 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.39 4.86 8.44 -40.82 -0.34 4.51 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.79 7.59 -51.93 -0.39 0.40 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.40 363.87 -7.72 -40.12 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.07 Total: 3.88 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 0.27 Total: -0.13 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.02 Total: -52.44 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.28 Total: -16.81 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.40 -7.72 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691028972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.889 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds