Wall clock time and date at job start Fri Apr 10 2020 17:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00583 * 2 1 4 4 H 1.07995 * 120.00828 * 202.92854 * 3 2 1 5 5 C 1.38823 * 119.99521 * 22.93467 * 3 2 1 6 6 N 1.31618 * 119.99790 * 13.11279 * 5 3 2 7 7 Si 1.86805 * 119.99753 * 193.11361 * 5 3 2 8 8 H 1.48498 * 109.46883 * 89.99973 * 7 5 3 9 9 H 1.48501 * 109.46828 * 209.99801 * 7 5 3 10 10 H 1.48494 * 109.47002 * 329.99802 * 7 5 3 11 11 C 1.46509 * 119.99725 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47144 * 89.99980 * 11 2 1 13 13 H 1.08999 * 109.47036 * 304.99896 * 12 11 2 14 14 O 1.42903 * 109.47556 * 64.99759 * 12 11 2 15 15 C 1.52991 * 109.47165 * 185.00007 * 12 11 2 16 16 N 1.46502 * 109.47306 * 179.97438 * 15 12 11 17 17 C 1.46501 * 120.00504 * 270.00050 * 16 15 12 18 18 C 1.34783 * 119.99721 * 89.99924 * 16 15 12 19 19 O 1.21272 * 119.99906 * 0.02562 * 18 16 15 20 20 C 1.50698 * 119.99590 * 180.27653 * 18 16 15 21 21 C 1.53009 * 109.46883 * 179.72560 * 20 18 16 22 22 C 1.53780 * 113.61152 * 274.13815 * 21 20 18 23 23 C 1.53960 * 87.01656 * 220.04737 * 22 21 20 24 24 C 1.53778 * 113.61238 * 176.52695 * 21 20 18 25 25 H 1.09005 * 109.46751 * 275.12553 * 1 2 3 26 26 H 1.08998 * 109.47124 * 35.11622 * 1 2 3 27 27 H 1.09001 * 109.47340 * 155.12398 * 1 2 3 28 28 H 0.97003 * 119.99541 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.46992 * 329.99939 * 11 2 1 30 30 H 1.09004 * 109.46731 * 209.99721 * 11 2 1 31 31 H 0.96698 * 113.99776 * 59.99776 * 14 12 11 32 32 H 1.09004 * 109.47631 * 59.99597 * 15 12 11 33 33 H 1.09001 * 109.47281 * 299.99390 * 15 12 11 34 34 H 1.09003 * 109.46641 * 270.00015 * 17 16 15 35 35 H 1.09001 * 109.46501 * 29.99777 * 17 16 15 36 36 H 1.08989 * 109.47265 * 149.99824 * 17 16 15 37 37 H 1.08996 * 109.47257 * 299.72233 * 20 18 16 38 38 H 1.08998 * 109.47353 * 59.72514 * 20 18 16 39 39 H 1.08999 * 112.84489 * 45.33445 * 21 20 18 40 40 H 1.09002 * 113.61539 * 334.56467 * 22 21 20 41 41 H 1.08996 * 113.61426 * 105.47235 * 22 21 20 42 42 H 1.08997 * 113.53707 * 270.81156 * 23 22 21 43 43 H 1.08999 * 113.74023 * 139.94438 * 23 22 21 44 44 H 1.08995 * 113.61730 * 254.52829 * 24 21 20 45 45 H 1.08996 * 113.61591 * 25.35185 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1657 1.2228 -0.3643 5 6 1.5380 2.3405 0.4685 6 7 0.4118 2.2605 1.1450 7 14 2.3131 4.0078 0.1387 8 1 1.7942 4.5502 -1.1425 9 1 1.9732 4.9391 1.2444 10 1 3.7881 3.8595 0.0523 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7717 -2.0818 15 6 3.1059 -3.0932 -1.4457 16 7 3.3495 -3.5158 -2.8271 17 6 2.3246 -4.2687 -3.5545 18 6 4.5166 -3.2119 -3.4289 19 8 5.3651 -2.5891 -2.8267 20 6 4.7646 -3.6412 -4.8520 21 6 6.1511 -3.1677 -5.2932 22 6 6.1660 -1.7305 -5.8400 23 6 7.1521 -2.2337 -6.9101 24 6 6.5382 -3.6291 -6.7081 25 1 -0.3633 0.0918 1.0236 26 1 -0.3633 0.8406 -0.5911 27 1 -0.3634 -0.9323 -0.4323 28 1 -0.0158 3.0674 1.4721 29 1 1.6083 -2.0286 0.5129 30 1 3.1499 -1.1387 0.5133 31 1 4.1836 -0.6805 -1.6546 32 1 2.4435 -3.8089 -0.9586 33 1 4.0523 -3.0490 -0.9067 34 1 2.4756 -5.3362 -3.3939 35 1 1.3375 -3.9827 -3.1913 36 1 2.3982 -4.0474 -4.6191 37 1 4.7139 -4.7280 -4.9177 38 1 4.0071 -3.2022 -5.5013 39 1 6.9211 -3.3586 -4.5457 40 1 5.2075 -1.4081 -6.2467 41 1 6.6001 -1.0058 -5.1513 42 1 8.1964 -2.1678 -6.6049 43 1 6.9737 -1.8175 -7.9015 44 1 7.2722 -4.4348 -6.7192 45 1 5.6816 -3.8281 -7.3521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755799941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:39 Heat of formation + Delta-G solvation = -44.786790 kcal Electronic energy + Delta-G solvation = -23495.467559 eV Core-core repulsion = 20128.546770 eV Total energy + Delta-G solvation = -3366.920789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11969 -38.52369 -37.03707 -35.24213 -34.43218 -31.41364 -30.86578 -29.18607 -26.93453 -25.91967 -25.68294 -25.39062 -23.45665 -21.78078 -20.39152 -19.51591 -19.05377 -17.04262 -16.67725 -16.24670 -16.03952 -15.36871 -15.03589 -14.89935 -14.53946 -14.23936 -13.85425 -13.45013 -13.26287 -13.12921 -12.77175 -12.57196 -12.53621 -12.50130 -11.90208 -11.80507 -11.56064 -11.46850 -10.99169 -10.78728 -10.70071 -10.57693 -10.49450 -10.39160 -10.32153 -10.27524 -9.88416 -9.82438 -9.63162 -9.46492 -8.53549 -8.27857 -6.60593 -5.61150 -3.06242 2.82102 3.11410 3.47551 3.53167 3.55687 4.36852 4.53084 4.58993 4.60363 4.76846 4.82745 5.00544 5.09927 5.17649 5.25013 5.35689 5.36545 5.45309 5.52233 5.55208 5.56230 5.62126 5.67410 5.76062 5.79030 5.82873 5.93803 6.05070 6.07934 6.13443 6.18741 6.43473 6.52964 6.62838 6.74655 6.85625 7.42151 7.50191 7.77211 7.95696 8.36645 8.46440 8.55282 9.34697 9.97031 10.45467 11.44142 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004090 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.818856 B = 6844.659060 C = 7926.130505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.237 4.237 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.914 5.914 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.125 3.875 12 C 0.073 3.927 13 H 0.083 0.917 14 O -0.541 6.541 15 C 0.081 3.919 16 N -0.613 5.613 17 C 0.079 3.921 18 C 0.519 3.481 19 O -0.534 6.534 20 C -0.129 4.129 21 C -0.093 4.093 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.138 4.138 25 H 0.031 0.969 26 H 0.040 0.960 27 H -0.006 1.006 28 H 0.250 0.750 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.368 0.632 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -16.700 -13.569 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.316 5.316 3 C -0.366 4.366 4 H 0.088 0.912 5 C -0.202 4.202 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.009 3.991 13 H 0.101 0.899 14 O -0.345 6.345 15 C -0.043 4.043 16 N -0.346 5.346 17 C -0.064 4.064 18 C 0.307 3.693 19 O -0.410 6.410 20 C -0.169 4.169 21 C -0.112 4.112 22 C -0.169 4.169 23 C -0.181 4.181 24 C -0.176 4.176 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.215 0.785 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.761 -16.156 -13.549 22.142 hybrid contribution 0.447 0.780 0.199 0.921 sum 7.208 -15.376 -13.349 21.600 Atomic orbital electron populations 1.20792 0.82790 0.95185 0.99388 1.43750 1.01615 1.00517 1.85687 1.19221 0.98208 0.85358 1.33856 0.91237 1.25001 0.98079 0.98467 0.98611 1.70073 1.19763 1.26908 1.39301 0.86237 0.78806 0.84239 0.77192 1.21687 1.21990 1.20502 1.21339 0.96828 0.89349 0.92900 1.23126 0.92842 0.85764 0.97331 0.89889 1.86541 1.28796 1.62936 1.56259 1.22361 1.02065 0.97837 0.82002 1.47774 1.16389 1.55999 1.14468 1.21758 0.92111 0.95400 0.97147 1.20526 0.81196 0.79016 0.88567 1.90644 1.44646 1.39535 1.66174 1.21710 0.99006 1.02164 0.94015 1.22318 0.95972 0.96773 0.96092 1.22942 0.99540 0.96690 0.97777 1.22833 0.99234 0.96695 0.99327 1.22976 1.00614 0.97188 0.96803 0.95059 0.94122 0.98757 0.93997 0.94054 0.93110 0.78548 0.90418 0.89896 0.92890 0.90974 0.91232 0.89409 0.89082 0.88444 0.90379 0.91032 0.90353 0.91675 0.91676 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 8.98 59.85 0.54 4.66 16 2 N -0.59 -15.31 2.90 -181.11 -0.53 -15.83 16 3 C -0.24 -6.75 9.21 -15.06 -0.14 -6.89 16 4 H 0.07 1.97 7.58 -52.49 -0.40 1.58 16 5 C 0.00 -0.13 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -27.57 10.71 55.49 0.59 -26.98 16 7 Si 0.90 23.04 29.57 -169.99 -5.03 18.01 16 8 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 9 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.12 2.55 5.32 -4.04 -0.02 2.52 16 12 C 0.07 1.31 3.48 -26.74 -0.09 1.21 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 14 O -0.54 -11.20 11.38 -43.95 -0.50 -11.70 16 15 C 0.08 1.14 5.15 -4.05 -0.02 1.11 16 16 N -0.61 -7.80 2.83 -181.58 -0.51 -8.32 16 17 C 0.08 0.70 10.25 59.85 0.61 1.32 16 18 C 0.52 7.20 7.18 -10.98 -0.08 7.12 16 19 O -0.53 -9.26 14.16 -3.15 -0.04 -9.31 16 20 C -0.13 -1.30 4.08 -27.88 -0.11 -1.42 16 21 C -0.09 -0.97 3.11 -89.80 -0.28 -1.25 16 22 C -0.13 -1.48 7.65 -25.83 -0.20 -1.68 16 23 C -0.14 -1.29 8.09 -25.82 -0.21 -1.49 16 24 C -0.14 -1.13 7.65 -25.92 -0.20 -1.33 16 25 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 26 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 27 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.37 7.36 8.45 45.56 0.39 7.74 16 32 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.07 0.52 6.43 -51.94 -0.33 0.19 16 37 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.09 0.84 7.13 -51.93 -0.37 0.47 16 39 H 0.10 1.17 7.73 -51.93 -0.40 0.77 16 40 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -33.71 359.11 -8.18 -41.89 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.28 Total: 3.16 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.29 Total: 3.67 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.44 Total: -51.13 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.54 Total: -21.01 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.03 Total: 18.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.71 -8.18 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755799941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.902 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds