Wall clock time and date at job start Fri Apr 10 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00583 * 2 1 4 4 H 1.07995 * 120.00828 * 202.92854 * 3 2 1 5 5 C 1.38823 * 119.99521 * 22.93467 * 3 2 1 6 6 N 1.31618 * 119.99790 * 13.11279 * 5 3 2 7 7 Si 1.86805 * 119.99753 * 193.11361 * 5 3 2 8 8 H 1.48498 * 109.46883 * 89.99973 * 7 5 3 9 9 H 1.48501 * 109.46828 * 209.99801 * 7 5 3 10 10 H 1.48494 * 109.47002 * 329.99802 * 7 5 3 11 11 C 1.46509 * 119.99725 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47144 * 89.99980 * 11 2 1 13 13 H 1.08999 * 109.47036 * 304.99896 * 12 11 2 14 14 O 1.42903 * 109.47556 * 64.99759 * 12 11 2 15 15 C 1.52991 * 109.47165 * 185.00007 * 12 11 2 16 16 N 1.46502 * 109.47306 * 179.97438 * 15 12 11 17 17 C 1.46501 * 120.00504 * 270.00050 * 16 15 12 18 18 C 1.34783 * 119.99721 * 89.99924 * 16 15 12 19 19 O 1.21272 * 119.99906 * 0.02562 * 18 16 15 20 20 C 1.50698 * 119.99590 * 180.27653 * 18 16 15 21 21 C 1.53009 * 109.46883 * 179.72560 * 20 18 16 22 22 C 1.53780 * 113.61152 * 274.13815 * 21 20 18 23 23 C 1.53960 * 87.01656 * 220.04737 * 22 21 20 24 24 C 1.53778 * 113.61238 * 176.52695 * 21 20 18 25 25 H 1.09005 * 109.46751 * 275.12553 * 1 2 3 26 26 H 1.08998 * 109.47124 * 35.11622 * 1 2 3 27 27 H 1.09001 * 109.47340 * 155.12398 * 1 2 3 28 28 H 0.97003 * 119.99541 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.46992 * 329.99939 * 11 2 1 30 30 H 1.09004 * 109.46731 * 209.99721 * 11 2 1 31 31 H 0.96698 * 113.99776 * 59.99776 * 14 12 11 32 32 H 1.09004 * 109.47631 * 59.99597 * 15 12 11 33 33 H 1.09001 * 109.47281 * 299.99390 * 15 12 11 34 34 H 1.09003 * 109.46641 * 270.00015 * 17 16 15 35 35 H 1.09001 * 109.46501 * 29.99777 * 17 16 15 36 36 H 1.08989 * 109.47265 * 149.99824 * 17 16 15 37 37 H 1.08996 * 109.47257 * 299.72233 * 20 18 16 38 38 H 1.08998 * 109.47353 * 59.72514 * 20 18 16 39 39 H 1.08999 * 112.84489 * 45.33445 * 21 20 18 40 40 H 1.09002 * 113.61539 * 334.56467 * 22 21 20 41 41 H 1.08996 * 113.61426 * 105.47235 * 22 21 20 42 42 H 1.08997 * 113.53707 * 270.81156 * 23 22 21 43 43 H 1.08999 * 113.74023 * 139.94438 * 23 22 21 44 44 H 1.08995 * 113.61730 * 254.52829 * 24 21 20 45 45 H 1.08996 * 113.61591 * 25.35185 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1657 1.2228 -0.3643 5 6 1.5380 2.3405 0.4685 6 7 0.4118 2.2605 1.1450 7 14 2.3131 4.0078 0.1387 8 1 1.7942 4.5502 -1.1425 9 1 1.9732 4.9391 1.2444 10 1 3.7881 3.8595 0.0523 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7717 -2.0818 15 6 3.1059 -3.0932 -1.4457 16 7 3.3495 -3.5158 -2.8271 17 6 2.3246 -4.2687 -3.5545 18 6 4.5166 -3.2119 -3.4289 19 8 5.3651 -2.5891 -2.8267 20 6 4.7646 -3.6412 -4.8520 21 6 6.1511 -3.1677 -5.2932 22 6 6.1660 -1.7305 -5.8400 23 6 7.1521 -2.2337 -6.9101 24 6 6.5382 -3.6291 -6.7081 25 1 -0.3633 0.0918 1.0236 26 1 -0.3633 0.8406 -0.5911 27 1 -0.3634 -0.9323 -0.4323 28 1 -0.0158 3.0674 1.4721 29 1 1.6083 -2.0286 0.5129 30 1 3.1499 -1.1387 0.5133 31 1 4.1836 -0.6805 -1.6546 32 1 2.4435 -3.8089 -0.9586 33 1 4.0523 -3.0490 -0.9067 34 1 2.4756 -5.3362 -3.3939 35 1 1.3375 -3.9827 -3.1913 36 1 2.3982 -4.0474 -4.6191 37 1 4.7139 -4.7280 -4.9177 38 1 4.0071 -3.2022 -5.5013 39 1 6.9211 -3.3586 -4.5457 40 1 5.2075 -1.4081 -6.2467 41 1 6.6001 -1.0058 -5.1513 42 1 8.1964 -2.1678 -6.6049 43 1 6.9737 -1.8175 -7.9015 44 1 7.2722 -4.4348 -6.7192 45 1 5.6816 -3.8281 -7.3521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755799941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:38 Heat of formation + Delta-G solvation = -67.065500 kcal Electronic energy + Delta-G solvation = -23496.433637 eV Core-core repulsion = 20128.546770 eV Total energy + Delta-G solvation = -3367.886866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12176 -39.46924 -38.51039 -36.71521 -35.97531 -33.32961 -32.02249 -30.52106 -28.10184 -27.80783 -26.79239 -26.42130 -24.59680 -23.24871 -22.11459 -20.33058 -20.02954 -18.81455 -17.92209 -17.58190 -17.07786 -16.82093 -16.37306 -16.12347 -16.09412 -15.35392 -15.22925 -15.03089 -14.76557 -14.25695 -14.11897 -13.73347 -13.49723 -13.29050 -13.27101 -13.07676 -12.82325 -12.70087 -12.59193 -12.50545 -12.27996 -12.24309 -12.07450 -11.88478 -11.81339 -11.45502 -11.20457 -11.15893 -11.03766 -10.67525 -10.53588 -9.50117 -8.67062 -7.80408 -5.27372 1.42877 1.44858 1.53442 1.79663 2.16691 2.51544 3.31615 3.51844 3.62445 3.77314 3.78116 3.84156 3.97594 4.03831 4.13713 4.26737 4.32011 4.46519 4.52863 4.57698 4.62572 4.68990 4.73277 4.80977 4.85310 4.89372 4.91518 4.94043 4.98213 5.05437 5.11577 5.19790 5.26099 5.35055 5.42493 5.60825 5.66117 5.66246 5.71683 6.35532 6.53560 6.92990 7.18473 7.35998 7.89703 8.31492 9.22192 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004090 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.818856 B = 6844.659060 C = 7926.130505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.612 5.612 3 C -0.240 4.240 4 H 0.064 0.936 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.963 3.037 8 H -0.291 1.291 9 H -0.292 1.292 10 H -0.273 1.273 11 C 0.122 3.878 12 C 0.084 3.916 13 H 0.078 0.922 14 O -0.562 6.562 15 C 0.092 3.908 16 N -0.615 5.615 17 C 0.072 3.928 18 C 0.506 3.494 19 O -0.580 6.580 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.121 4.121 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.034 0.966 28 H 0.246 0.754 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.367 0.633 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.918 -19.014 -15.374 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 C -0.371 4.371 4 H 0.082 0.918 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.792 3.208 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.198 1.198 11 C -0.005 4.005 12 C 0.021 3.979 13 H 0.096 0.904 14 O -0.367 6.367 15 C -0.033 4.033 16 N -0.347 5.347 17 C -0.070 4.070 18 C 0.296 3.704 19 O -0.459 6.459 20 C -0.160 4.160 21 C -0.116 4.116 22 C -0.182 4.182 23 C -0.177 4.177 24 C -0.159 4.159 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.214 0.786 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.733 -18.528 -15.382 25.004 hybrid contribution 0.456 1.438 0.764 1.691 sum 7.189 -17.090 -14.618 23.610 Atomic orbital electron populations 1.20544 0.82804 0.95844 0.97660 1.43993 1.01989 1.01596 1.85939 1.19439 0.98113 0.86807 1.32755 0.91795 1.25697 0.98908 1.01530 0.99156 1.70216 1.20975 1.27248 1.40567 0.85318 0.78305 0.80491 0.76682 1.21824 1.21873 1.19759 1.21550 0.96285 0.87842 0.94850 1.22946 0.92615 0.87458 0.94855 0.90390 1.86507 1.29039 1.64239 1.56878 1.22093 1.01627 0.96083 0.83455 1.47907 1.16982 1.55772 1.14054 1.22052 0.90943 0.96379 0.97656 1.21303 0.80954 0.78270 0.89861 1.90627 1.46244 1.41607 1.67446 1.21741 0.98835 1.04051 0.91387 1.22290 0.95927 0.96340 0.97073 1.22995 1.00089 0.96710 0.98391 1.22833 0.98648 0.97299 0.98960 1.22921 1.01319 0.96785 0.94839 0.97452 0.97240 0.94752 0.94478 0.91428 0.93875 0.78640 0.87221 0.91211 0.90250 0.90723 0.89623 0.86312 0.87730 0.90599 0.90444 0.94152 0.90460 0.90541 0.90426 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 8.98 127.77 1.15 10.06 16 2 N -0.61 -31.56 2.90 -726.92 -2.11 -33.67 16 3 C -0.24 -13.88 9.21 84.04 0.77 -13.10 16 4 H 0.06 3.69 7.58 -2.91 -0.02 3.67 16 5 C -0.06 -3.47 5.10 84.86 0.43 -3.04 16 6 N -0.94 -57.89 10.71 21.65 0.23 -57.66 16 7 Si 0.96 48.11 29.57 68.60 2.03 50.14 16 8 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 9 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 11 C 0.12 4.86 5.32 86.38 0.46 5.32 16 12 C 0.08 2.91 3.48 30.59 0.11 3.01 16 13 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 14 O -0.56 -23.41 11.38 -140.65 -1.60 -25.01 16 15 C 0.09 2.40 5.15 86.38 0.44 2.84 16 16 N -0.61 -14.21 2.83 -846.77 -2.39 -16.61 16 17 C 0.07 0.99 10.25 127.77 1.31 2.30 16 18 C 0.51 13.42 7.18 87.66 0.63 14.05 16 19 O -0.58 -20.44 14.16 5.33 0.08 -20.36 16 20 C -0.12 -2.13 4.08 29.85 0.12 -2.01 16 21 C -0.10 -1.93 3.11 -10.27 -0.03 -1.96 16 22 C -0.14 -3.23 7.65 31.18 0.24 -2.99 16 23 C -0.14 -2.32 8.09 31.18 0.25 -2.07 16 24 C -0.12 -1.65 7.65 31.12 0.24 -1.41 16 25 H 0.01 0.40 7.34 -2.38 -0.02 0.38 16 26 H 0.01 0.50 7.34 -2.39 -0.02 0.48 16 27 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 28 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 30 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 31 H 0.37 15.17 8.45 -74.06 -0.63 14.55 16 32 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 33 H 0.07 2.04 7.42 -2.39 -0.02 2.03 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.03 8.07 -2.39 -0.02 1.01 16 36 H 0.09 0.92 6.43 -2.39 -0.02 0.91 16 37 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 38 H 0.10 1.60 7.13 -2.39 -0.02 1.58 16 39 H 0.08 1.84 7.73 -2.39 -0.02 1.82 16 40 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 41 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -75.01 359.11 2.68 -72.33 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.33 Total: 19.85 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.12 Total: 10.99 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.27 Total: -107.94 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.53 Total: -45.38 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -75.01 2.68 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755799941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds