Wall clock time and date at job start Fri Apr 10 2020 17:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 C 1.52995 * 109.47191 * 239.99484 * 2 1 3 5 5 N 1.46896 * 109.47130 * 184.49482 * 4 2 1 6 6 C 1.47018 * 110.99912 * 170.27327 * 5 4 2 7 7 C 1.53099 * 109.25651 * 182.34968 * 6 5 4 8 8 O 1.43009 * 109.29751 * 303.22017 * 7 6 5 9 9 C 1.43016 * 113.73679 * 58.64474 * 8 7 6 10 10 C 1.47015 * 111.00109 * 293.95451 * 5 4 2 11 11 N 1.46504 * 109.47073 * 119.99485 * 2 1 3 12 12 C 1.34775 * 119.99980 * 279.07537 * 11 2 1 13 13 O 1.21581 * 120.00040 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00089 * 179.97438 * 12 11 2 15 15 C 1.46496 * 120.00209 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47390 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47461 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99985 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00095 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47042 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47591 * 119.99743 * 21 19 17 24 24 H 1.48497 * 109.47363 * 239.99939 * 21 19 17 25 25 H 1.08995 * 109.47000 * 60.00207 * 1 2 3 26 26 H 1.08993 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46835 * 300.00766 * 1 2 3 28 28 H 1.09001 * 109.47389 * 64.49608 * 4 2 1 29 29 H 1.08999 * 109.47285 * 304.49708 * 4 2 1 30 30 H 1.09002 * 109.46957 * 62.43930 * 6 5 4 31 31 H 1.09005 * 109.54576 * 302.30810 * 6 5 4 32 32 H 1.09000 * 109.50512 * 183.26201 * 7 6 5 33 33 H 1.08997 * 109.50304 * 63.17867 * 7 6 5 34 34 H 1.08999 * 109.50467 * 61.27136 * 9 8 7 35 35 H 1.09008 * 109.50588 * 181.35246 * 9 8 7 36 36 H 1.09001 * 109.50412 * 57.67419 * 10 5 4 37 37 H 1.08999 * 109.54313 * 297.56446 * 10 5 4 38 38 H 0.96998 * 120.00018 * 99.07188 * 11 2 1 39 39 H 0.97006 * 119.99787 * 0.02562 * 14 12 11 40 40 H 1.08993 * 109.47610 * 300.00619 * 15 14 12 41 41 H 1.09001 * 109.46782 * 60.00403 * 15 14 12 42 42 H 1.09002 * 109.47228 * 300.00982 * 16 15 14 43 43 H 1.09001 * 109.46778 * 60.00463 * 16 15 14 44 44 H 0.96995 * 120.00552 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5050 -0.8160 -1.1961 6 6 4.0146 -1.6989 -2.2555 7 6 5.5358 -1.8153 -2.1274 8 8 6.1161 -0.5095 -2.1839 9 6 5.6425 0.3756 -1.1653 10 6 4.1226 0.5152 -1.2843 11 7 2.0184 -0.6905 1.1963 12 6 2.0694 -0.0406 2.3759 13 8 1.7107 1.1189 2.4471 14 7 2.5182 -0.6760 3.4765 15 6 2.5742 0.0306 4.7586 16 6 3.1159 -0.9106 5.8364 17 6 3.1729 -0.1839 7.1554 18 1 2.8543 0.8461 7.2187 19 6 3.6319 -0.8340 8.2813 20 7 4.0204 -2.0880 8.2042 21 14 3.7019 0.0665 9.9164 22 1 3.2132 1.4573 9.7369 23 1 2.8454 -0.6358 10.9055 24 1 5.1034 0.0943 10.4066 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7440 -0.1632 -2.1374 29 1 1.6124 -1.7231 -1.2903 30 1 3.7624 -1.2803 -3.2298 31 1 3.5642 -2.6865 -2.1552 32 1 5.9244 -2.4221 -2.9452 33 1 5.7860 -2.2840 -1.1757 34 1 5.8953 -0.0290 -0.1853 35 1 6.1091 1.3532 -1.2868 36 1 3.7503 1.1434 -0.4750 37 1 3.8728 0.9702 -2.2427 38 1 2.3049 -1.6155 1.1393 39 1 2.8048 -1.6010 3.4195 40 1 3.2305 0.8961 4.6681 41 1 1.5731 0.3612 5.0352 42 1 2.4591 -1.7759 5.9267 43 1 4.1170 -1.2416 5.5600 44 1 4.3429 -2.5455 8.9963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343648739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:29:43 Heat of formation + Delta-G solvation = -106.499193 kcal Electronic energy + Delta-G solvation = -23032.441500 eV Core-core repulsion = 19597.418749 eV Total energy + Delta-G solvation = -3435.022751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15584 -40.38631 -37.88918 -36.49997 -35.39572 -34.78610 -32.43405 -32.11917 -30.72977 -28.96902 -26.69219 -25.49569 -25.01716 -23.17621 -22.25641 -21.68811 -21.15472 -19.40130 -18.41337 -17.65700 -17.41340 -16.97676 -16.52211 -16.48927 -16.08716 -15.98575 -15.76799 -15.45209 -15.28228 -14.97601 -14.78434 -14.30010 -13.94235 -13.60414 -13.28998 -13.18005 -12.96199 -12.92578 -12.74504 -12.58052 -12.49674 -12.33023 -12.21352 -11.74097 -11.63605 -11.46740 -11.44959 -11.11472 -10.67019 -10.59545 -10.23146 -9.61847 -9.39024 -8.22878 -6.33016 1.41852 1.42675 1.55981 1.86759 2.28503 2.42578 2.70570 2.94509 3.11883 3.48892 3.69090 3.92910 3.98879 4.12951 4.18971 4.29433 4.30718 4.39188 4.51159 4.54762 4.56950 4.62684 4.71721 4.74404 4.78801 4.80935 4.89108 4.91025 5.02105 5.05275 5.29590 5.36280 5.56313 5.61574 5.67102 5.81635 5.92934 5.98427 6.16173 6.16545 6.19882 6.80426 7.24740 7.36554 7.72301 8.89300 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.003181 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.118549 B = 8800.402012 C = 9603.842679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.059 0.941 4 C 0.056 3.944 5 N -0.544 5.544 6 C 0.022 3.978 7 C 0.056 3.944 8 O -0.404 6.404 9 C 0.064 3.936 10 C 0.022 3.978 11 N -0.714 5.714 12 C 0.699 3.301 13 O -0.644 6.644 14 N -0.736 5.736 15 C 0.163 3.837 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.409 0.591 39 H 0.405 0.595 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.008 0.992 43 H 0.007 0.993 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -1.830 -24.976 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.077 0.923 4 C -0.071 4.071 5 N -0.270 5.270 6 C -0.105 4.105 7 C -0.020 4.020 8 O -0.323 6.323 9 C -0.013 4.013 10 C -0.106 4.106 11 N -0.369 5.369 12 C 0.398 3.602 13 O -0.526 6.526 14 N -0.390 5.390 15 C 0.039 3.961 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.245 0.755 39 H 0.240 0.760 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.788 -1.073 -24.516 24.604 hybrid contribution -0.016 -0.092 0.613 0.620 sum -1.804 -1.165 -23.903 23.999 Atomic orbital electron populations 1.22117 0.94513 1.02921 1.02137 1.20820 0.93947 0.96070 0.83209 0.92311 1.22425 0.86800 1.02449 0.95475 1.62127 1.06138 1.11192 1.47500 1.22817 0.96223 0.98780 0.92698 1.22852 0.92022 0.84120 1.03018 1.87954 1.67014 1.23912 1.53452 1.22662 0.92855 0.94753 0.91048 1.22705 0.95670 0.91181 1.01037 1.44838 1.69781 1.16326 1.05995 1.16171 0.78298 0.84427 0.81262 1.90841 1.57781 1.18024 1.85970 1.45208 1.69422 1.16502 1.07900 1.21005 0.99110 0.94848 0.81185 1.19119 0.95420 0.94449 0.92298 1.21495 1.43571 0.98801 0.94499 0.92388 1.25864 0.94571 0.95713 1.03013 1.70062 1.44127 1.11674 1.30758 0.85395 0.77971 0.78876 0.78792 1.19002 1.20175 1.20203 0.89831 0.90940 0.94711 0.91723 0.87737 0.93679 0.87496 0.86591 0.92749 0.93391 0.87641 0.90819 0.93505 0.75514 0.76024 0.94175 0.94094 0.97348 0.97423 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.42 71.98 0.68 -2.31 16 2 C 0.17 3.37 2.32 44.99 0.10 3.47 16 3 H 0.06 1.51 6.29 -2.39 -0.02 1.50 16 4 C 0.06 0.76 4.49 86.30 0.39 1.14 16 5 N -0.54 -8.74 4.46 -895.20 -3.99 -12.73 16 6 C 0.02 0.28 5.65 86.31 0.49 0.77 16 7 C 0.06 0.84 7.01 72.02 0.50 1.34 16 8 O -0.40 -8.31 10.83 -148.98 -1.61 -9.93 16 9 C 0.06 1.26 7.01 72.02 0.50 1.76 16 10 C 0.02 0.42 5.43 86.31 0.47 0.89 16 11 N -0.71 -17.43 4.86 -457.81 -2.22 -19.65 16 12 C 0.70 24.57 8.47 179.05 1.52 26.08 16 13 O -0.64 -28.09 15.83 -3.97 -0.06 -28.15 16 14 N -0.74 -26.68 5.56 -478.55 -2.66 -29.34 16 15 C 0.16 7.30 5.61 86.38 0.48 7.78 16 16 C 0.02 1.27 5.09 29.85 0.15 1.42 16 17 C -0.55 -30.95 9.11 25.60 0.23 -30.72 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 21 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 0.91 7.90 -2.39 -0.02 0.89 16 28 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.10 1.01 8.04 -2.39 -0.02 0.99 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.91 8.09 -2.38 -0.02 0.89 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.65 6.47 -2.39 -0.02 1.63 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.41 8.06 8.58 -92.71 -0.80 7.27 16 39 H 0.40 12.63 8.49 -92.70 -0.79 11.84 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.03 356.48 -2.86 -73.88 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.59 Total: 21.77 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.98 Total: 12.50 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -8.60 Total: -116.15 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.68 Total: -38.08 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.03 -2.86 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343648739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.616 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds