Wall clock time and date at job start Fri Apr 10 2020 17:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99629 * 2 1 4 4 C 1.52996 * 112.84925 * 294.62486 * 3 2 1 5 5 N 1.46504 * 109.47498 * 288.93259 * 4 3 2 6 6 C 1.34772 * 120.00186 * 175.10720 * 5 4 3 7 7 O 1.21587 * 120.00184 * 0.27321 * 6 5 4 8 8 N 1.34774 * 120.00176 * 180.27783 * 6 5 4 9 9 C 1.46498 * 120.00508 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47398 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00096 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00189 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00402 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99423 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00037 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00241 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99713 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47143 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47023 * 120.00485 * 17 15 13 20 20 H 1.48502 * 109.46931 * 240.00306 * 17 15 13 21 21 C 1.53784 * 113.69031 * 65.89183 * 3 2 1 22 22 C 1.53790 * 87.07896 * 89.12692 * 21 3 2 23 23 C 1.53775 * 113.61458 * 163.42874 * 3 2 1 24 24 H 1.09008 * 109.46496 * 176.28105 * 1 2 3 25 25 H 1.09000 * 109.46848 * 296.26966 * 1 2 3 26 26 H 1.08994 * 109.47209 * 56.27949 * 1 2 3 27 27 H 1.09004 * 109.47478 * 168.93015 * 4 3 2 28 28 H 1.08997 * 109.47598 * 48.93367 * 4 3 2 29 29 H 0.96995 * 119.99326 * 355.38064 * 5 4 3 30 30 H 0.97004 * 119.99556 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.46658 * 299.99916 * 9 8 6 32 32 H 1.09002 * 109.46810 * 59.99446 * 9 8 6 33 33 H 0.97001 * 120.00123 * 359.97438 * 12 10 9 34 34 H 0.96992 * 119.99837 * 179.97438 * 16 15 13 35 35 H 1.08994 * 113.61571 * 203.67463 * 21 3 2 36 36 H 1.08997 * 113.61256 * 334.58161 * 21 3 2 37 37 H 1.08995 * 113.61208 * 270.88196 * 22 21 3 38 38 H 1.08996 * 113.61036 * 139.97938 * 22 21 3 39 39 H 1.08999 * 113.61399 * 25.34525 * 23 3 2 40 40 H 1.08994 * 113.61940 * 156.25008 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7151 2.0872 -1.2817 5 7 2.4718 1.5059 -2.3934 6 6 2.2935 1.9708 -3.6458 7 8 1.5084 2.8759 -3.8524 8 7 2.9854 1.4323 -4.6694 9 6 2.7913 1.9371 -6.0309 10 6 3.6762 1.1724 -6.9812 11 8 4.3977 0.2919 -6.5625 12 7 3.6659 1.4668 -8.2963 13 6 4.4705 0.7707 -9.1610 14 1 5.1124 -0.0138 -8.7883 15 6 4.4595 1.0740 -10.5170 16 7 3.6781 2.0283 -10.9705 17 14 5.5564 0.1260 -11.6949 18 1 6.3341 -0.8885 -10.9393 19 1 4.7174 -0.5529 -12.7148 20 1 6.4893 1.0657 -12.3672 21 6 1.7360 2.1039 1.2854 22 6 3.0184 1.4752 1.8558 23 6 3.4945 1.3191 0.4019 24 1 -0.3632 -1.0256 -0.0667 25 1 -0.3633 0.4548 0.9215 26 1 -0.3633 0.5705 -0.8547 27 1 2.0082 3.1285 -1.1479 28 1 0.6488 2.0354 -1.5016 29 1 3.0981 0.7839 -2.2286 30 1 3.6120 0.7103 -4.5045 31 1 1.7486 1.8078 -6.3210 32 1 3.0497 2.9954 -6.0662 33 1 3.0886 2.1707 -8.6313 34 1 3.6707 2.2401 -11.9170 35 1 1.8015 3.1836 1.1511 36 1 0.8295 1.7953 1.8061 37 1 2.8503 0.5260 2.3645 38 1 3.6220 2.1691 2.4408 39 1 4.0076 0.3769 0.2093 40 1 4.0407 2.1841 0.0260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345564266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:13 Heat of formation + Delta-G solvation = -89.599471 kcal Electronic energy + Delta-G solvation = -22250.224383 eV Core-core repulsion = 18680.101364 eV Total energy + Delta-G solvation = -3570.123018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60381 -39.48244 -38.13243 -35.91917 -34.50439 -34.22522 -33.60387 -31.35748 -28.83983 -27.44312 -26.88806 -25.73672 -24.39606 -22.75791 -20.64543 -19.82222 -19.55878 -18.44028 -17.98767 -16.82090 -16.41483 -15.78759 -15.52005 -15.47803 -15.27173 -14.67411 -14.53303 -14.33972 -14.22795 -13.98988 -13.66440 -13.38620 -12.86929 -12.72114 -12.17445 -12.15154 -11.86073 -11.73228 -11.61799 -11.37630 -11.16152 -11.12955 -10.50039 -10.39641 -10.31232 -10.05230 -9.71951 -9.62953 -9.13748 -8.60225 -8.56180 -8.08090 -6.49786 -3.91703 2.79604 3.11501 3.23551 3.29940 3.32073 3.43949 3.77425 4.06422 4.15492 4.20924 4.36787 4.44651 4.59242 4.92942 4.94105 5.04236 5.09083 5.19010 5.28634 5.32813 5.35394 5.42560 5.52775 5.59698 5.66723 5.84294 5.91827 5.94349 6.03310 6.10674 6.50915 6.78993 6.89492 7.14242 7.47916 7.94637 8.27782 8.47275 8.82890 9.06645 9.41664 9.89600 10.67299 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039200 B = 0.002634 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.110695 B =10627.114012 C =10799.888921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.075 3.925 4 C 0.129 3.871 5 N -0.742 5.742 6 C 0.704 3.296 7 O -0.601 6.601 8 N -0.724 5.724 9 C 0.129 3.871 10 C 0.429 3.571 11 O -0.597 6.597 12 N -0.550 5.550 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.159 4.159 22 C -0.134 4.134 23 C -0.125 4.125 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.399 0.601 30 H 0.407 0.593 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.273 0.727 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 0.196 22.594 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.276 6.276 3 C 0.034 3.966 4 C 0.003 3.997 5 N -0.398 5.398 6 C 0.404 3.596 7 O -0.480 6.480 8 N -0.381 5.381 9 C 0.000 4.000 10 C 0.215 3.785 11 O -0.484 6.484 12 N -0.185 5.185 13 C -0.433 4.433 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.536 5.536 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.197 4.197 22 C -0.171 4.171 23 C -0.162 4.162 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.244 0.756 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.753 0.352 22.434 22.934 hybrid contribution 0.388 -0.422 -0.810 0.992 sum -4.365 -0.071 21.624 22.060 Atomic orbital electron populations 1.22799 0.80893 1.02988 1.00367 1.87936 1.19921 1.25066 1.94725 1.22870 0.96168 0.84525 0.92991 1.21556 0.96880 0.96796 0.84421 1.44868 1.47732 1.41677 1.05548 1.15856 0.81224 0.82120 0.80408 1.90896 1.40474 1.32696 1.83981 1.44761 1.46424 1.41028 1.05922 1.20776 1.00117 0.98330 0.80749 1.19775 0.87450 0.87560 0.83708 1.90494 1.45536 1.35365 1.76985 1.41796 1.38143 1.33537 1.05042 1.19779 1.19546 1.16309 0.87664 0.87644 1.25325 0.97755 0.96919 0.97787 1.69624 1.38181 1.29891 1.15855 0.85759 0.79417 0.79244 0.79677 1.19143 1.20637 1.20628 1.23485 0.99354 1.00496 0.96329 1.22761 0.96713 1.01312 0.96322 1.22994 0.93489 1.03587 0.96164 0.89394 0.93851 0.93382 0.90775 0.91285 0.76665 0.75572 0.90065 0.90039 0.77022 0.91664 0.88789 0.90642 0.89719 0.91033 0.90097 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.63 101.05 1.07 1.28 16 2 O -0.36 -3.60 10.56 -35.23 -0.37 -3.97 16 3 C 0.07 0.65 0.77 -89.81 -0.07 0.59 16 4 C 0.13 1.40 5.12 -4.04 -0.02 1.38 16 5 N -0.74 -9.45 5.42 -65.23 -0.35 -9.81 16 6 C 0.70 11.82 8.57 -86.93 -0.74 11.08 16 7 O -0.60 -12.02 16.34 5.29 0.09 -11.93 16 8 N -0.72 -12.56 5.53 -66.42 -0.37 -12.93 16 9 C 0.13 2.45 6.15 -5.20 -0.03 2.42 16 10 C 0.43 9.99 7.85 -10.99 -0.09 9.90 16 11 O -0.60 -15.45 15.24 5.54 0.08 -15.36 16 12 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 13 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 14 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 17 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.16 -1.09 7.21 -25.91 -0.19 -1.28 16 22 C -0.13 -0.89 8.02 -25.91 -0.21 -1.10 16 23 C -0.12 -0.96 6.91 -25.92 -0.18 -1.14 16 24 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.04 0.28 6.84 -51.93 -0.36 -0.07 16 26 H 0.05 0.42 6.48 -51.93 -0.34 0.08 16 27 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 28 H 0.07 0.82 6.48 -51.93 -0.34 0.48 16 29 H 0.40 4.46 8.12 -40.82 -0.33 4.13 16 30 H 0.41 6.89 7.45 -40.82 -0.30 6.59 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.09 0.57 7.96 -51.93 -0.41 0.16 16 36 H 0.07 0.49 6.81 -51.93 -0.35 0.13 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -32.35 337.11 -6.52 -38.87 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -5.63 Total: 16.38 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -0.69 Total: 15.24 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.05 Total: -59.94 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.20 Total: -31.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.35 -6.52 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.728 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds