Wall clock time and date at job start Fri Apr 10 2020 17:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99955 * 2 1 4 4 C 1.52997 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47337 * 62.70591 * 4 3 2 6 6 C 1.46892 * 111.00394 * 176.58505 * 5 4 3 7 7 C 1.53242 * 109.34220 * 172.74589 * 6 5 4 8 8 N 1.47076 * 108.51856 * 53.83293 * 7 6 5 9 9 C 1.34775 * 120.88197 * 128.79606 * 8 7 6 10 10 O 1.21592 * 120.00111 * 354.87784 * 9 8 7 11 11 N 1.34776 * 120.00163 * 174.87485 * 9 8 7 12 12 C 1.46498 * 120.00204 * 174.91481 * 11 9 8 13 13 C 1.52997 * 109.47227 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47011 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99647 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00294 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99705 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46814 * 60.00173 * 18 16 14 20 20 H 1.48501 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47012 * 300.00326 * 18 16 14 22 22 C 1.47083 * 118.23687 * 308.81176 * 8 7 6 23 23 C 1.46902 * 111.00154 * 52.28051 * 5 4 3 24 24 H 1.09000 * 109.46641 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47090 * 299.99848 * 1 2 3 26 26 H 1.08997 * 109.46631 * 60.00115 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.99974 * 3 2 1 28 28 H 1.09000 * 109.47015 * 300.00276 * 3 2 1 29 29 H 1.08994 * 109.47170 * 302.70302 * 4 3 2 30 30 H 1.09004 * 109.47190 * 182.70439 * 4 3 2 31 31 H 1.09005 * 109.48922 * 52.78812 * 6 5 4 32 32 H 1.08999 * 109.49498 * 292.70511 * 6 5 4 33 33 H 1.09006 * 109.63066 * 173.54372 * 7 6 5 34 34 H 1.09001 * 109.62546 * 293.92567 * 7 6 5 35 35 H 0.97005 * 119.99783 * 354.90967 * 11 9 8 36 36 H 1.09011 * 109.46935 * 299.99860 * 12 11 9 37 37 H 1.08999 * 109.47561 * 59.99620 * 12 11 9 38 38 H 1.08997 * 109.47026 * 299.99451 * 13 12 11 39 39 H 1.09004 * 109.47566 * 59.99654 * 13 12 11 40 40 H 0.96993 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.62658 * 170.89672 * 22 8 7 42 42 H 1.08998 * 109.62977 * 291.47798 * 22 8 7 43 43 H 1.09004 * 109.48945 * 67.29765 * 23 5 4 44 44 H 1.09001 * 109.51541 * 307.23790 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9740 0.5126 -1.2298 6 6 5.4398 0.4509 -1.3022 7 6 5.8530 -0.4107 -2.5002 8 7 5.1925 0.1158 -3.7042 9 6 5.9006 0.3905 -4.8176 10 8 7.1125 0.2924 -4.8070 11 7 5.2655 0.7737 -5.9428 12 6 6.0392 1.1794 -7.1188 13 6 5.0837 1.5643 -8.2500 14 6 5.8797 1.9822 -9.4596 15 1 6.9590 1.9745 -9.4247 16 6 5.2298 2.3744 -10.6106 17 7 3.9154 2.3843 -10.6529 18 14 6.2165 2.8917 -12.1101 19 1 7.0763 1.7638 -12.5501 20 1 5.2890 3.2654 -13.2081 21 1 7.0684 4.0578 -11.7639 22 6 3.7388 0.3351 -3.6609 23 6 3.4089 1.1673 -2.4173 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8535 0.6026 0.8656 30 1 3.9787 2.1793 0.0491 31 1 5.8310 0.0103 -0.3852 32 1 5.8408 1.4573 -1.4226 33 1 6.9347 -0.3669 -2.6272 34 1 5.5456 -1.4429 -2.3322 35 1 4.2959 0.7809 -5.9740 36 1 6.6644 2.0355 -6.8647 37 1 6.6704 0.3516 -7.4418 38 1 4.4582 0.7086 -8.5042 39 1 4.4527 2.3924 -7.9269 40 1 3.4583 2.6599 -11.4628 41 1 3.4227 0.8721 -4.5553 42 1 3.2251 -0.6247 -3.6060 43 1 3.8382 2.1638 -2.5221 44 1 2.3272 1.2468 -2.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345821811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:16 Heat of formation + Delta-G solvation = -60.181674 kcal Electronic energy + Delta-G solvation = -22906.452796 eV Core-core repulsion = 19473.438523 eV Total energy + Delta-G solvation = -3433.014272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22185 -38.77610 -37.48868 -34.92136 -34.58905 -32.85494 -31.39272 -30.32971 -29.35270 -27.05556 -25.99758 -24.56127 -23.99899 -22.33261 -21.22635 -20.79290 -19.26816 -17.97038 -16.78192 -16.66653 -16.36154 -15.77921 -15.60038 -15.37890 -15.04225 -14.83430 -14.48327 -14.39452 -13.99490 -13.86173 -13.51230 -13.10662 -12.65739 -12.33516 -12.27082 -12.12581 -11.99734 -11.62660 -11.50127 -11.30471 -11.11865 -11.00110 -10.86610 -10.63098 -10.29335 -9.93404 -9.84237 -9.51520 -9.25538 -8.81028 -8.52261 -8.40121 -8.11590 -6.07686 -4.10216 2.91285 3.32579 3.36095 3.39814 3.44059 3.55296 3.69243 4.26480 4.45802 4.57099 4.68462 4.83310 4.86174 4.95702 5.03916 5.06861 5.11294 5.17374 5.18036 5.29332 5.30095 5.39947 5.41120 5.52648 5.58779 5.73156 5.77979 5.97911 6.28217 6.42627 6.60613 6.69699 6.79658 6.81082 6.92372 7.03974 7.25503 7.57750 7.65193 7.91499 8.27138 8.40957 8.94251 9.02013 9.54342 11.04006 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002950 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.483486 B = 9488.409942 C =10347.026910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.058 3.942 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.042 3.958 7 C 0.136 3.864 8 N -0.637 5.637 9 C 0.703 3.297 10 O -0.597 6.597 11 N -0.739 5.739 12 C 0.139 3.861 13 C 0.014 3.986 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.118 3.882 23 C 0.037 3.963 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -2.818 23.508 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.019 4.019 4 C -0.071 4.071 5 N -0.252 5.252 6 C -0.087 4.087 7 C 0.013 3.987 8 N -0.376 5.376 9 C 0.405 3.595 10 O -0.476 6.476 11 N -0.394 5.394 12 C 0.016 3.984 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.006 4.006 23 C -0.091 4.091 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.227 0.773 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.311 -3.466 23.358 24.443 hybrid contribution -0.114 1.461 -0.851 1.695 sum -6.425 -2.005 22.506 23.491 Atomic orbital electron populations 1.22750 0.81509 1.02793 0.99688 1.88024 1.19008 1.26871 1.95251 1.22670 0.93457 0.85551 1.00201 1.22140 0.93459 0.97696 0.93794 1.61920 1.08876 1.53046 1.01397 1.22527 0.87351 0.99533 0.99279 1.21451 0.98804 0.96606 0.81871 1.47319 1.07580 1.70047 1.12690 1.15970 0.85227 0.78041 0.80312 1.90867 1.12008 1.60556 1.84216 1.45682 1.10053 1.71024 1.12670 1.21593 0.94942 0.98498 0.83321 1.19313 0.94583 0.97000 0.91476 1.21020 0.93228 1.44884 0.96812 0.92269 1.24993 0.94939 0.95472 0.98874 1.69945 1.07167 1.47886 1.28400 0.86569 0.79769 0.79169 0.82003 1.20084 1.21266 1.20134 1.21666 0.81150 1.00401 0.97408 1.22576 1.00543 0.95735 0.90278 0.89610 0.94450 0.94138 0.93014 0.92859 0.89625 0.93404 0.89622 0.94367 0.88601 0.91245 0.77262 0.92955 0.92680 0.95962 0.96082 0.92820 0.89811 0.90631 0.94398 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.54 10.61 -35.23 -0.37 -3.91 16 3 C 0.06 0.44 5.59 37.16 0.21 0.65 16 4 C 0.06 0.46 5.51 -3.83 -0.02 0.44 16 5 N -0.53 -5.29 4.65 -234.33 -1.09 -6.38 16 6 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 7 C 0.14 1.70 6.61 -3.60 -0.02 1.68 16 8 N -0.64 -9.25 3.01 -178.19 -0.54 -9.79 16 9 C 0.70 13.16 8.31 -86.92 -0.72 12.44 16 10 O -0.60 -13.36 15.80 5.28 0.08 -13.27 16 11 N -0.74 -13.82 5.41 -65.22 -0.35 -14.18 16 12 C 0.14 3.08 5.62 -4.04 -0.02 3.06 16 13 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.12 1.37 6.49 -3.60 -0.02 1.34 16 23 C 0.04 0.38 5.24 -3.70 -0.02 0.36 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.38 6.00 -51.93 -0.31 0.07 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.72 8.11 -51.93 -0.42 0.29 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 1.32 7.04 -51.93 -0.37 0.96 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 6.43 6.12 -40.82 -0.25 6.18 16 36 H 0.05 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 0.94 5.84 -51.93 -0.30 0.64 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.79 5.71 -51.93 -0.30 0.49 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -33.34 352.15 -8.74 -42.08 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.41 Total: 0.62 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.09 Total: 8.53 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -1.24 Total: -55.86 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.29 Total: -17.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.34 -8.74 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345821811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.104 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds