Wall clock time and date at job start Fri Apr 10 2020 17:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99955 * 2 1 4 4 C 1.52997 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47337 * 62.70591 * 4 3 2 6 6 C 1.46892 * 111.00394 * 176.58505 * 5 4 3 7 7 C 1.53242 * 109.34220 * 172.74589 * 6 5 4 8 8 N 1.47076 * 108.51856 * 53.83293 * 7 6 5 9 9 C 1.34775 * 120.88197 * 128.79606 * 8 7 6 10 10 O 1.21592 * 120.00111 * 354.87784 * 9 8 7 11 11 N 1.34776 * 120.00163 * 174.87485 * 9 8 7 12 12 C 1.46498 * 120.00204 * 174.91481 * 11 9 8 13 13 C 1.52997 * 109.47227 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47011 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99647 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00294 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99705 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46814 * 60.00173 * 18 16 14 20 20 H 1.48501 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47012 * 300.00326 * 18 16 14 22 22 C 1.47083 * 118.23687 * 308.81176 * 8 7 6 23 23 C 1.46902 * 111.00154 * 52.28051 * 5 4 3 24 24 H 1.09000 * 109.46641 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47090 * 299.99848 * 1 2 3 26 26 H 1.08997 * 109.46631 * 60.00115 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.99974 * 3 2 1 28 28 H 1.09000 * 109.47015 * 300.00276 * 3 2 1 29 29 H 1.08994 * 109.47170 * 302.70302 * 4 3 2 30 30 H 1.09004 * 109.47190 * 182.70439 * 4 3 2 31 31 H 1.09005 * 109.48922 * 52.78812 * 6 5 4 32 32 H 1.08999 * 109.49498 * 292.70511 * 6 5 4 33 33 H 1.09006 * 109.63066 * 173.54372 * 7 6 5 34 34 H 1.09001 * 109.62546 * 293.92567 * 7 6 5 35 35 H 0.97005 * 119.99783 * 354.90967 * 11 9 8 36 36 H 1.09011 * 109.46935 * 299.99860 * 12 11 9 37 37 H 1.08999 * 109.47561 * 59.99620 * 12 11 9 38 38 H 1.08997 * 109.47026 * 299.99451 * 13 12 11 39 39 H 1.09004 * 109.47566 * 59.99654 * 13 12 11 40 40 H 0.96993 * 119.99725 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.62658 * 170.89672 * 22 8 7 42 42 H 1.08998 * 109.62977 * 291.47798 * 22 8 7 43 43 H 1.09004 * 109.48945 * 67.29765 * 23 5 4 44 44 H 1.09001 * 109.51541 * 307.23790 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9740 0.5126 -1.2298 6 6 5.4398 0.4509 -1.3022 7 6 5.8530 -0.4107 -2.5002 8 7 5.1925 0.1158 -3.7042 9 6 5.9006 0.3905 -4.8176 10 8 7.1125 0.2924 -4.8070 11 7 5.2655 0.7737 -5.9428 12 6 6.0392 1.1794 -7.1188 13 6 5.0837 1.5643 -8.2500 14 6 5.8797 1.9822 -9.4596 15 1 6.9590 1.9745 -9.4247 16 6 5.2298 2.3744 -10.6106 17 7 3.9154 2.3843 -10.6529 18 14 6.2165 2.8917 -12.1101 19 1 7.0763 1.7638 -12.5501 20 1 5.2890 3.2654 -13.2081 21 1 7.0684 4.0578 -11.7639 22 6 3.7388 0.3351 -3.6609 23 6 3.4089 1.1673 -2.4173 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8535 0.6026 0.8656 30 1 3.9787 2.1793 0.0491 31 1 5.8310 0.0103 -0.3852 32 1 5.8408 1.4573 -1.4226 33 1 6.9347 -0.3669 -2.6272 34 1 5.5456 -1.4429 -2.3322 35 1 4.2959 0.7809 -5.9740 36 1 6.6644 2.0355 -6.8647 37 1 6.6704 0.3516 -7.4418 38 1 4.4582 0.7086 -8.5042 39 1 4.4527 2.3924 -7.9269 40 1 3.4583 2.6599 -11.4628 41 1 3.4227 0.8721 -4.5553 42 1 3.2251 -0.6247 -3.6060 43 1 3.8382 2.1638 -2.5221 44 1 2.3272 1.2468 -2.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345821811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:15 Heat of formation + Delta-G solvation = -84.751112 kcal Electronic energy + Delta-G solvation = -22907.518206 eV Core-core repulsion = 19473.438523 eV Total energy + Delta-G solvation = -3434.079683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47301 -39.70944 -38.31082 -36.65283 -35.72217 -34.81038 -32.47822 -31.43533 -30.80684 -27.95568 -26.87360 -26.24180 -24.93301 -23.42815 -22.75629 -21.97852 -20.55320 -19.20486 -18.49892 -17.48102 -17.36151 -17.04535 -16.76453 -16.50614 -16.31881 -15.84282 -15.69266 -15.41052 -15.26546 -15.09035 -14.91763 -14.27849 -14.26806 -13.62822 -13.32229 -13.09693 -12.92308 -12.81773 -12.71196 -12.53632 -12.39002 -12.28134 -12.23189 -12.12420 -11.66474 -11.60443 -11.47517 -11.15088 -10.59811 -10.48771 -10.20778 -9.63511 -9.21207 -8.23588 -6.33981 1.42061 1.44752 1.52245 1.63310 2.09272 2.41047 2.79602 2.97693 3.00178 3.11088 3.82729 3.90808 3.98039 4.19427 4.20746 4.31403 4.32458 4.41739 4.47421 4.51063 4.53559 4.57287 4.62106 4.67568 4.75910 4.82137 4.83569 4.85770 4.94863 4.95994 5.05010 5.29565 5.45177 5.52883 5.58550 5.77871 5.86131 6.00768 6.06866 6.17232 6.37273 6.78530 6.95507 7.35134 7.52743 8.88214 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002950 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.483486 B = 9488.409942 C =10347.026910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.051 3.949 7 C 0.132 3.868 8 N -0.630 5.630 9 C 0.700 3.300 10 O -0.638 6.638 11 N -0.734 5.734 12 C 0.160 3.840 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.113 3.887 23 C 0.044 3.956 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -2.572 24.440 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.019 4.019 4 C -0.071 4.071 5 N -0.260 5.260 6 C -0.078 4.078 7 C 0.010 3.990 8 N -0.367 5.367 9 C 0.401 3.599 10 O -0.520 6.520 11 N -0.391 5.391 12 C 0.036 3.964 13 C -0.012 4.012 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.009 4.009 23 C -0.085 4.085 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.972 -3.228 24.343 25.527 hybrid contribution 0.008 1.348 -1.054 1.711 sum -6.963 -1.880 23.289 24.381 Atomic orbital electron populations 1.22865 0.80340 1.03371 1.00498 1.87978 1.20427 1.27972 1.95452 1.22737 0.92918 0.85132 1.01156 1.22211 0.94012 0.98073 0.92790 1.61931 1.08441 1.53571 1.02058 1.22441 0.87791 0.98600 0.98962 1.21614 0.97879 0.97717 0.81840 1.47392 1.08772 1.68737 1.11830 1.16085 0.84867 0.77890 0.81020 1.90835 1.13886 1.62294 1.84999 1.45391 1.10448 1.71212 1.12016 1.21091 0.94095 0.97592 0.83637 1.19108 0.94405 0.95769 0.91876 1.21429 0.93612 1.45396 0.98183 0.92314 1.25864 0.96014 0.95263 1.01938 1.70048 1.08650 1.48427 1.29414 0.85499 0.78388 0.79008 0.78157 1.19391 1.20502 1.19332 1.21885 0.79167 1.01358 0.98532 1.22519 1.01485 0.94827 0.89674 0.89256 0.93238 0.93700 0.91298 0.92623 0.89135 0.92467 0.87352 0.95349 0.90244 0.90134 0.75858 0.93854 0.93914 0.97403 0.97260 0.92504 0.89638 0.89620 0.95168 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.74 10.61 -148.98 -1.58 -8.32 16 3 C 0.06 0.73 5.59 71.98 0.40 1.13 16 4 C 0.06 0.77 5.51 86.30 0.48 1.25 16 5 N -0.53 -9.64 4.65 -895.28 -4.16 -13.80 16 6 C 0.05 0.96 5.62 86.39 0.49 1.44 16 7 C 0.13 3.21 6.61 86.35 0.57 3.78 16 8 N -0.63 -17.92 3.01 -835.93 -2.52 -20.43 16 9 C 0.70 26.35 8.31 179.06 1.49 27.84 16 10 O -0.64 -29.04 15.80 -4.01 -0.06 -29.10 16 11 N -0.73 -27.67 5.41 -478.53 -2.59 -30.26 16 12 C 0.16 7.22 5.62 86.38 0.49 7.71 16 13 C 0.03 1.33 5.09 29.85 0.15 1.49 16 14 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.01 0.45 5.46 84.66 0.46 0.92 16 17 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 18 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C 0.11 2.49 6.49 86.35 0.56 3.05 16 23 C 0.04 0.81 5.24 86.38 0.45 1.26 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.67 6.00 -2.39 -0.01 0.65 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.56 8.11 -2.38 -0.02 1.54 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 2.20 7.04 -2.38 -0.02 2.19 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.40 13.19 6.12 -92.70 -0.57 12.63 16 36 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.09 1.84 5.84 -2.39 -0.01 1.82 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.11 1.63 5.71 -2.39 -0.01 1.62 16 Total: -1.00 -70.89 352.15 -1.17 -72.06 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.41 Total: 17.49 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 7.01 Total: 20.63 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -8.98 Total: -118.62 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.64 Total: -37.43 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.89 -1.17 -72.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345821811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.687 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds