Wall clock time and date at job start Fri Apr 10 2020 17:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46713 * 2 1 4 4 H 1.09006 * 109.47789 * 54.99587 * 3 2 1 5 5 C 1.50705 * 109.47069 * 174.99571 * 3 2 1 6 6 H 1.08001 * 119.99397 * 119.99810 * 5 3 2 7 7 C 1.37868 * 120.00173 * 299.99971 * 5 3 2 8 8 N 1.31514 * 120.00061 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00100 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47205 * 59.99632 * 9 7 5 11 11 H 1.48507 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47025 * 299.99771 * 9 7 5 13 13 N 1.46507 * 109.47136 * 294.99410 * 3 2 1 14 14 C 1.34773 * 119.99590 * 85.00387 * 13 3 2 15 15 O 1.21283 * 120.00617 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99788 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47046 * 84.99670 * 16 14 13 18 18 O 1.42898 * 109.47366 * 324.99859 * 16 14 13 19 19 C 1.52999 * 109.47289 * 204.99639 * 16 14 13 20 20 C 1.53179 * 109.54252 * 60.17856 * 19 16 14 21 21 C 1.53280 * 109.06328 * 176.85306 * 20 19 16 22 22 O 1.42901 * 109.46155 * 302.44168 * 21 20 19 23 23 C 1.42903 * 114.09356 * 61.15994 * 22 21 20 24 24 C 1.53091 * 109.41633 * 298.84001 * 23 22 21 25 25 H 1.09006 * 109.47212 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47800 * 299.99990 * 1 2 3 27 27 H 1.09004 * 109.47255 * 60.00889 * 1 2 3 28 28 H 1.08997 * 109.47426 * 239.99688 * 2 1 3 29 29 H 1.09007 * 109.46756 * 119.99202 * 2 1 3 30 30 H 0.97003 * 120.00384 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99893 * 265.00212 * 13 3 2 32 32 H 1.09006 * 109.46981 * 179.97438 * 17 16 14 33 33 H 1.08999 * 109.47480 * 299.99718 * 17 16 14 34 34 H 1.09004 * 109.46928 * 60.00378 * 17 16 14 35 35 H 0.96702 * 113.99801 * 300.00525 * 18 16 14 36 36 H 1.09002 * 109.54301 * 300.00033 * 19 16 14 37 37 H 1.09006 * 109.52033 * 296.84410 * 20 19 16 38 38 H 1.09002 * 109.52377 * 57.02479 * 20 19 16 39 39 H 1.09007 * 109.45633 * 182.44534 * 21 20 19 40 40 H 1.09003 * 109.46692 * 62.44798 * 21 20 19 41 41 H 1.09000 * 109.47917 * 178.85973 * 23 22 21 42 42 H 1.09000 * 109.49157 * 58.82974 * 23 22 21 43 43 H 1.09004 * 109.52607 * 297.70481 * 24 23 22 44 44 H 1.08999 * 109.57497 * 177.54830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1470 1.8890 -0.6522 7 6 4.1431 0.8786 1.2281 8 7 3.4060 0.3376 2.1734 9 14 6.0048 0.8816 1.3820 10 1 6.4992 2.2819 1.3823 11 1 6.3976 0.2181 2.6512 12 1 6.5975 0.1476 0.2352 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3398 2.6318 -0.4346 16 6 0.0362 3.3375 -2.6550 17 6 -0.5199 2.2933 -3.6253 18 8 1.1791 3.9675 -3.2371 19 6 -1.0364 4.3904 -2.3693 20 6 -0.4799 5.4392 -1.4014 21 6 -1.5347 6.5299 -1.1844 22 8 -1.8877 7.1079 -2.4427 23 6 -2.4563 6.1821 -3.3710 24 6 -1.4398 5.0789 -3.6768 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8291 -0.0608 2.9501 31 1 2.2719 2.1231 -1.9978 32 1 -0.8088 2.7803 -4.5567 33 1 0.2442 1.5432 -3.8290 34 1 -1.3918 1.8128 -3.1814 35 1 1.5845 4.6426 -2.6758 36 1 -1.9088 3.9110 -1.9253 37 1 -0.2412 4.9656 -0.4490 38 1 0.4213 5.8833 -1.8242 39 1 -1.1293 7.3022 -0.5306 40 1 -2.4205 6.0922 -0.7241 41 1 -2.7148 6.7037 -4.2925 42 1 -3.3542 5.7396 -2.9396 43 1 -0.5580 5.5158 -4.1456 44 1 -1.8861 4.3477 -4.3508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346724347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:30 Heat of formation + Delta-G solvation = -152.995916 kcal Electronic energy + Delta-G solvation = -24607.256867 eV Core-core repulsion = 21137.925116 eV Total energy + Delta-G solvation = -3469.331751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48293 -38.71398 -36.83820 -35.11694 -33.42636 -32.30009 -31.28652 -30.96407 -30.22889 -27.01324 -25.53746 -23.89417 -23.21456 -22.39836 -20.48425 -19.64233 -19.30669 -17.99759 -16.75877 -16.06167 -15.91304 -15.52045 -15.43027 -14.99857 -14.56188 -14.52045 -14.08092 -13.63408 -13.47085 -13.04048 -12.70372 -12.47830 -12.31976 -12.14146 -11.80457 -11.71979 -11.51052 -11.43698 -11.27888 -11.18165 -11.00642 -10.84317 -10.77013 -10.54226 -10.32687 -10.22620 -10.11141 -9.65665 -9.54692 -9.08161 -8.72141 -8.51009 -7.84365 -6.14460 -4.24103 3.24002 3.26436 3.29666 3.31172 3.80864 3.89999 4.27563 4.36046 4.55644 4.74776 4.84223 4.97084 5.16535 5.16914 5.27890 5.35203 5.40332 5.49049 5.58177 5.64468 5.71209 5.86063 5.86679 5.91296 5.97401 6.16426 6.21380 6.35362 6.37208 6.42047 6.62087 7.00337 7.14070 7.14544 7.33156 7.41639 7.50604 7.61643 7.73486 7.87618 8.15266 8.65101 8.74612 9.09130 9.43493 10.90679 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.004528 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.787336 B = 6181.583672 C = 6457.416148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.478 3.522 15 O -0.545 6.545 16 C 0.121 3.879 17 C -0.136 4.136 18 O -0.551 6.551 19 C -0.097 4.097 20 C -0.159 4.159 21 C 0.066 3.934 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.148 4.148 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.393 0.607 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.379 0.621 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 7.762 -10.534 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.345 5.345 14 C 0.262 3.738 15 O -0.425 6.425 16 C 0.077 3.923 17 C -0.194 4.194 18 O -0.357 6.357 19 C -0.116 4.116 20 C -0.196 4.196 21 C -0.011 4.011 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.185 4.185 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.373 7.406 -10.180 15.695 hybrid contribution 1.450 -0.105 0.340 1.493 sum -7.924 7.301 -9.839 14.591 Atomic orbital electron populations 1.21838 0.98394 0.98016 1.01141 1.21932 0.92571 0.99856 1.02288 1.18793 0.94203 0.89187 0.81015 0.93434 1.21201 0.90727 1.39144 1.06266 0.92134 1.24874 0.98585 0.94761 0.95362 1.69882 1.35228 1.37553 1.09342 0.86521 0.84879 0.78333 0.77453 1.20185 1.21137 1.20146 1.46527 1.14675 1.54761 1.18521 1.20968 0.83327 0.80246 0.89279 1.90665 1.51376 1.60313 1.40123 1.21473 0.86426 0.92551 0.91825 1.21740 1.01427 0.97532 0.98651 1.86500 1.44506 1.57272 1.47463 1.21568 0.99007 0.95252 0.95798 1.22345 0.99162 0.96728 1.01376 1.22560 0.97035 0.96168 0.85339 1.87902 1.81970 1.35603 1.25050 1.22570 0.94831 0.91071 0.93078 1.22235 1.00592 0.98245 0.97462 0.95882 0.93194 0.94330 0.95062 0.88291 0.92513 0.77385 0.90998 0.91328 0.90759 0.77234 0.89350 0.89237 0.91452 0.88905 0.93056 0.89124 0.93389 0.90282 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.04 4.93 -54.93 -0.27 -14.31 16 14 C 0.48 8.85 4.51 -10.99 -0.05 8.80 16 15 O -0.55 -11.69 12.16 5.55 0.07 -11.62 16 16 C 0.12 1.72 0.76 -91.77 -0.07 1.65 16 17 C -0.14 -1.74 8.48 37.16 0.32 -1.42 16 18 O -0.55 -7.43 11.52 -35.23 -0.41 -7.84 16 19 C -0.10 -1.25 1.31 -90.44 -0.12 -1.37 16 20 C -0.16 -2.08 4.86 -26.49 -0.13 -2.21 16 21 C 0.07 0.78 6.85 37.30 0.26 1.04 16 22 O -0.39 -4.84 10.77 -35.23 -0.38 -5.22 16 23 C 0.06 0.63 6.84 37.20 0.25 0.88 16 24 C -0.15 -1.58 4.87 -26.59 -0.13 -1.71 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 27 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 7.34 7.98 -40.82 -0.33 7.01 16 32 H 0.07 0.77 6.51 -51.93 -0.34 0.43 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.38 4.56 7.26 45.56 0.33 4.89 16 36 H 0.09 1.24 7.87 -51.93 -0.41 0.83 16 37 H 0.09 1.40 6.58 -51.93 -0.34 1.06 16 38 H 0.07 0.83 6.64 -51.93 -0.34 0.48 16 39 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 44 H 0.07 0.70 6.62 -51.93 -0.34 0.36 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -29.03 335.50 -6.87 -35.90 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.49 Total: 12.69 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.05 Total: -6.28 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.36 Total: -38.11 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.72 Total: -24.68 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.03 -6.87 -35.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346724347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.091 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds