Wall clock time and date at job start Fri Apr 10 2020 17:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46987 * 215.87261 * 3 2 1 5 5 C 1.37095 * 120.00033 * 277.01520 * 4 3 2 6 6 H 1.08001 * 120.00523 * 143.96895 * 5 4 3 7 7 C 1.38951 * 119.99761 * 323.96270 * 5 4 3 8 8 N 1.31407 * 120.00314 * 330.75128 * 7 5 4 9 9 Si 1.86809 * 119.99904 * 150.75024 * 7 5 4 10 10 H 1.48499 * 109.47128 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.46942 * 300.00042 * 9 7 5 12 12 H 1.48503 * 109.47004 * 59.99916 * 9 7 5 13 13 C 1.34775 * 120.00025 * 97.00827 * 4 3 2 14 14 O 1.21288 * 119.99985 * 175.59412 * 13 4 3 15 15 C 1.50705 * 119.99672 * 355.59215 * 13 4 3 16 16 H 1.08990 * 109.55018 * 335.29559 * 15 13 4 17 17 C 1.53034 * 109.54725 * 215.09989 * 15 13 4 18 18 C 1.52587 * 109.98422 * 176.50084 * 17 15 13 19 19 C 1.52584 * 110.64414 * 69.98781 * 18 17 15 20 20 C 1.53039 * 109.98493 * 290.01288 * 19 18 17 21 21 S 1.81669 * 109.54553 * 95.58625 * 15 13 4 22 22 O 1.42104 * 108.66476 * 288.47893 * 21 15 13 23 23 O 1.42097 * 108.66843 * 59.82308 * 21 15 13 24 24 H 1.09001 * 109.47246 * 95.87912 * 3 2 1 25 25 H 1.08991 * 109.47518 * 335.87177 * 3 2 1 26 26 H 0.97000 * 119.99842 * 352.63618 * 8 7 5 27 27 H 1.09003 * 109.38930 * 296.65541 * 17 15 13 28 28 H 1.08996 * 109.38887 * 56.34373 * 17 15 13 29 29 H 1.09003 * 109.24052 * 190.28497 * 18 17 15 30 30 H 1.09002 * 109.24178 * 309.68487 * 18 17 15 31 31 H 1.09003 * 109.38929 * 50.16853 * 19 18 17 32 32 H 1.09006 * 109.38776 * 169.85676 * 19 18 17 33 33 H 1.09007 * 109.54895 * 183.50389 * 20 19 18 34 34 H 1.09003 * 109.55124 * 303.69327 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1202 0.8094 5 6 3.1870 2.3736 0.2616 6 1 2.9699 3.2434 0.8639 7 6 3.5590 2.5250 -1.0686 8 7 4.3461 1.6386 -1.6358 9 14 2.9402 3.9886 -2.0508 10 1 3.4763 3.9189 -3.4339 11 1 1.4561 3.9639 -2.0939 12 1 3.3959 5.2460 -1.4055 13 6 3.4548 0.9178 2.0926 14 8 3.9335 1.8258 2.7388 15 6 3.2614 -0.4366 2.7245 16 1 2.4656 -0.9708 2.2057 17 6 2.8869 -0.2652 4.1984 18 6 2.6040 -1.6268 4.8263 19 6 3.8912 -2.4348 4.9614 20 6 4.3859 -2.8657 3.5788 21 16 4.8066 -1.3854 2.6134 22 8 5.0092 -1.7677 1.2598 23 8 5.8284 -0.6723 3.2966 24 1 2.9713 0.1061 -1.0223 25 1 2.9718 -0.9370 0.4200 26 1 4.7533 0.9391 -1.1012 27 1 3.7109 0.2131 4.7279 28 1 1.9977 0.3605 4.2754 29 1 2.1649 -1.4828 5.8136 30 1 1.9011 -2.1733 4.1975 31 1 4.6535 -1.8230 5.4439 32 1 3.7011 -3.3193 5.5695 33 1 5.2700 -3.4940 3.6872 34 1 3.6014 -3.4248 3.0686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346791569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:30:37 Heat of formation + Delta-G solvation = -95.278201 kcal Electronic energy + Delta-G solvation = -21762.622359 eV Core-core repulsion = 18401.454207 eV Total energy + Delta-G solvation = -3361.168152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14060 -38.59943 -37.97318 -37.54511 -37.13759 -36.69060 -34.07691 -32.78308 -29.60168 -29.12190 -26.63423 -24.76289 -21.95261 -21.75742 -20.18284 -19.85708 -18.97873 -18.28971 -17.91260 -17.56140 -16.79700 -16.64495 -15.92132 -15.64600 -15.55164 -15.21512 -15.05298 -14.87151 -14.43088 -14.22022 -13.98150 -13.83455 -13.46585 -13.28517 -13.19122 -12.96277 -12.82822 -12.64052 -12.52122 -12.26604 -12.06372 -11.94840 -11.80350 -11.58084 -11.25923 -11.12676 -10.59592 -10.12131 -8.87402 -6.31990 -1.17553 1.29550 1.39481 1.53908 1.55663 1.58933 1.76077 1.80721 2.22639 2.51542 2.66894 2.74046 2.91485 3.10911 3.32008 3.49014 3.69033 3.72889 3.84727 4.00693 4.10304 4.29300 4.46171 4.53730 4.66649 4.84245 4.96612 5.12045 5.16491 5.33997 5.62449 5.76639 6.29482 6.37465 6.63754 7.07341 7.53015 8.33956 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.006566 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.614011 B = 4263.268830 C = 4518.184378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.222 3.778 3 C 0.173 3.827 4 N -0.452 5.452 5 C -0.435 4.435 6 H 0.066 0.934 7 C -0.012 4.012 8 N -0.867 5.867 9 Si 1.112 2.888 10 H -0.268 1.268 11 H -0.273 1.273 12 H -0.273 1.273 13 C 0.463 3.537 14 O -0.582 6.582 15 C -0.597 4.597 16 H 0.171 0.829 17 C -0.091 4.091 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.560 4.560 21 S 2.391 3.609 22 O -0.964 6.964 23 O -0.970 6.970 24 H 0.128 0.872 25 H 0.141 0.859 26 H 0.272 0.728 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.167 0.833 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 -14.326 10.024 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.096 4.096 3 C 0.046 3.954 4 N -0.173 5.173 5 C -0.562 4.562 6 H 0.084 0.916 7 C -0.218 4.218 8 N -0.499 5.499 9 Si 0.931 3.069 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.198 1.198 13 C 0.252 3.748 14 O -0.464 6.464 15 C -0.706 4.706 16 H 0.188 0.812 17 C -0.130 4.130 18 C -0.172 4.172 19 C -0.156 4.156 20 C -0.694 4.694 21 S 2.576 3.424 22 O -0.961 6.961 23 O -0.967 6.967 24 H 0.145 0.855 25 H 0.158 0.842 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.185 0.815 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.611 -12.940 8.359 15.823 hybrid contribution 0.046 -0.182 1.551 1.563 sum -3.565 -13.122 9.910 16.826 Atomic orbital electron populations 1.81042 1.13188 1.09212 1.09780 1.29843 0.95486 0.92098 0.92220 1.19506 0.80718 0.92668 1.02481 1.43639 1.55134 1.08651 1.09844 1.20286 1.52832 0.84104 0.98954 0.91597 1.27715 0.92956 1.05048 0.96121 1.70852 1.22073 1.16183 1.40840 0.82973 0.76561 0.71997 0.75339 1.19208 1.19849 1.19794 1.20108 0.81685 0.89381 0.83650 1.90574 1.47457 1.45686 1.62698 1.30522 1.25092 1.07319 1.07658 0.81195 1.21261 1.03605 1.01037 0.87123 1.21809 0.98689 0.92465 1.04258 1.21519 0.97669 1.03242 0.93189 1.30062 1.14874 1.14742 1.09769 1.08987 0.76778 0.80075 0.76582 1.93550 1.84323 1.83031 1.35213 1.93533 1.53658 1.73480 1.76049 0.85510 0.84199 0.91763 0.90997 0.90596 0.87106 0.88126 0.90502 0.84859 0.81520 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.15 18.54 20.01 0.37 -17.78 16 2 C 0.22 8.67 15.45 89.44 1.38 10.06 16 3 C 0.17 6.99 4.85 84.57 0.41 7.40 16 4 N -0.45 -22.20 2.29 -645.41 -1.48 -23.68 16 5 C -0.43 -24.14 8.72 84.04 0.73 -23.41 16 6 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 7 C -0.01 -0.66 4.82 84.93 0.41 -0.25 16 8 N -0.87 -46.97 12.17 21.66 0.26 -46.71 16 9 Si 1.11 47.10 30.01 68.60 2.06 49.16 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.46 21.90 6.62 87.66 0.58 22.48 16 14 O -0.58 -32.72 16.23 -3.05 -0.05 -32.77 16 15 C -0.60 -19.05 1.95 29.86 0.06 -18.99 16 16 H 0.17 4.13 6.21 -2.39 -0.01 4.12 16 17 C -0.09 -2.38 4.62 30.47 0.14 -2.24 16 18 C -0.14 -1.80 5.63 30.32 0.17 -1.63 16 19 C -0.12 -1.33 5.73 30.47 0.17 -1.16 16 20 C -0.56 -7.26 6.35 72.00 0.46 -6.80 16 21 S 2.39 72.22 4.67 -56.49 -0.26 71.96 16 22 O -0.96 -34.12 16.70 -127.40 -2.13 -36.24 16 23 O -0.97 -38.80 17.92 -127.40 -2.28 -41.08 16 24 H 0.13 5.53 5.52 -2.39 -0.01 5.52 16 25 H 0.14 4.56 4.78 -2.39 -0.01 4.55 16 26 H 0.27 15.06 7.47 -92.71 -0.69 14.37 16 27 H 0.07 2.18 7.84 -2.39 -0.02 2.16 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.08 1.10 8.01 -2.39 -0.02 1.08 16 32 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.17 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.18 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -82.46 301.06 2.22 -80.25 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.21 Total: 11.43 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.52 Total: -14.54 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -0.85 Total: -88.17 kcal Atomic # 8 Polarization: -105.63 SS G_CDS: -4.46 Total: -110.09 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.06 Total: 49.16 kcal Atomic # 16 Polarization: 72.22 SS G_CDS: -0.26 Total: 71.96 kcal Total: -82.46 2.22 -80.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346791569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.031 kcal (2) G-P(sol) polarization free energy of solvation -82.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds