Wall clock time and date at job start Fri Apr 10 2020 17:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 119.99826 * 2 1 4 4 H 1.48507 * 109.47381 * 240.00103 * 3 2 1 5 5 H 1.48498 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00321 * 3 2 1 7 7 C 1.40033 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00260 * 179.81724 * 7 2 1 9 9 C 1.41549 * 119.99947 * 359.81790 * 7 2 1 10 10 C 1.41158 * 120.99709 * 147.46046 * 9 7 2 11 11 C 1.36592 * 119.12618 * 179.97438 * 10 9 7 12 12 N 1.32062 * 121.25824 * 359.97134 * 11 10 9 13 13 C 1.32496 * 122.23308 * 0.02600 * 12 11 10 14 14 N 1.39453 * 119.64766 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00459 * 354.25298 * 14 13 12 16 16 O 1.21576 * 119.99635 * 355.04913 * 15 14 13 17 17 N 1.34774 * 120.00232 * 175.04683 * 15 14 13 18 18 C 1.46989 * 127.25320 * 359.68862 * 17 15 14 19 19 C 1.50585 * 107.13245 * 179.91213 * 18 17 15 20 20 C 1.30391 * 110.12041 * 0.36415 * 19 18 17 21 21 C 1.46981 * 127.25450 * 180.02562 * 17 15 14 22 22 H 1.08995 * 109.90680 * 60.40734 * 21 17 15 23 23 C 1.53001 * 109.90176 * 299.34083 * 21 17 15 24 24 O 1.42902 * 109.47278 * 294.99611 * 23 21 17 25 25 C 1.38640 * 120.70224 * 359.97438 * 13 12 11 26 26 H 0.96993 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.43710 * 0.24973 * 10 9 7 28 28 H 1.07999 * 119.37011 * 180.02562 * 11 10 9 29 29 H 0.97006 * 120.00173 * 174.25217 * 14 13 12 30 30 H 1.09000 * 109.90019 * 299.40728 * 18 17 15 31 31 H 1.08992 * 109.90819 * 60.65474 * 18 17 15 32 32 H 1.08003 * 124.93828 * 180.14457 * 19 18 17 33 33 H 1.08001 * 124.94237 * 179.79479 * 20 19 18 34 34 H 1.08996 * 109.47272 * 55.00234 * 23 21 17 35 35 H 1.09005 * 109.47220 * 175.00403 * 23 21 17 36 36 H 0.96694 * 114.00411 * 179.97438 * 24 23 21 37 37 H 1.07998 * 120.66643 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0035 9 6 1.2999 -2.4386 0.0028 10 6 1.8180 -3.5789 -0.6482 11 6 1.1032 -4.7425 -0.6204 12 7 -0.0587 -4.8183 0.0027 13 6 -0.5931 -3.7809 0.6301 14 7 -1.8239 -3.9212 1.2705 15 6 -2.5180 -5.0705 1.1524 16 8 -2.1158 -5.9505 0.4162 17 7 -3.6578 -5.2443 1.8503 18 6 -4.2825 -4.2965 2.7841 19 6 -5.5360 -4.9483 3.3052 20 6 -5.6749 -6.1349 2.7830 21 6 -4.5344 -6.4240 1.8433 22 1 -3.9815 -7.2992 2.1843 23 6 -5.0716 -6.6653 0.4312 24 8 -5.9113 -5.5743 0.0481 25 6 0.0583 -2.5573 0.6567 26 1 -0.4850 0.8400 0.0004 27 1 2.7693 -3.5331 -1.1576 28 1 1.4962 -5.6175 -1.1168 29 1 -2.1806 -3.1916 1.8010 30 1 -3.6018 -4.0848 3.6087 31 1 -4.5357 -3.3737 2.2623 32 1 -6.2187 -4.4996 4.0117 33 1 -6.4895 -6.8121 2.9939 34 1 -4.2377 -6.7444 -0.2663 35 1 -5.6480 -7.5904 0.4148 36 1 -6.2876 -5.6600 -0.8385 37 1 -0.3780 -1.7120 1.1679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889253852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:51 Heat of formation + Delta-G solvation = 4.184281 kcal Electronic energy + Delta-G solvation = -22594.501434 eV Core-core repulsion = 19145.298052 eV Total energy + Delta-G solvation = -3449.203381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42428 -38.80257 -37.34794 -36.13708 -34.25785 -33.69844 -31.72174 -30.45555 -30.11790 -28.32877 -25.95856 -25.35526 -23.25340 -21.89149 -21.20953 -19.63737 -19.28124 -18.10564 -17.52936 -17.22011 -15.75023 -15.65989 -15.34866 -14.97799 -14.63013 -14.16773 -13.99743 -13.79940 -13.77316 -13.27955 -12.82717 -12.68861 -12.54999 -12.42388 -12.25781 -12.00585 -11.39992 -11.18446 -10.95842 -10.87892 -10.28016 -10.13218 -10.06192 -9.72065 -9.57055 -9.50157 -9.36214 -8.23746 -7.86204 -7.75105 -6.98066 -6.68043 -4.61113 2.06052 2.70215 2.81485 2.85257 3.03925 3.06565 3.25904 3.84354 3.90391 4.17921 4.34316 4.56915 4.71685 4.75577 5.21987 5.25896 5.42112 5.53950 5.58900 5.64884 5.68714 5.75311 5.91202 6.16963 6.33405 6.58645 6.64275 6.72436 6.82280 6.99887 7.17660 7.35462 7.45674 7.51696 7.65348 7.91079 8.11967 8.38101 8.48610 8.75015 8.80327 9.16940 9.71741 10.18471 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.004058 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.440914 B = 6898.332843 C = 7608.743404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.144 3.856 10 C -0.277 4.277 11 C 0.116 3.884 12 N -0.550 5.550 13 C 0.353 3.647 14 N -0.663 5.663 15 C 0.723 3.277 16 O -0.531 6.531 17 N -0.634 5.634 18 C 0.123 3.877 19 C -0.159 4.159 20 C -0.153 4.153 21 C 0.183 3.817 22 H 0.092 0.908 23 C 0.065 3.935 24 O -0.565 6.565 25 C -0.234 4.234 26 H 0.280 0.720 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.404 0.596 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.374 0.626 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 -5.646 5.710 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.136 3.864 10 C -0.301 4.301 11 C -0.038 4.038 12 N -0.268 5.268 13 C 0.126 3.874 14 N -0.311 5.311 15 C 0.425 3.575 16 O -0.402 6.402 17 N -0.375 5.375 18 C 0.000 4.000 19 C -0.178 4.178 20 C -0.171 4.171 21 C 0.079 3.921 22 H 0.110 0.890 23 C -0.014 4.014 24 O -0.369 6.369 25 C -0.260 4.260 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.140 0.860 29 H 0.239 0.761 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.220 0.780 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.667 -6.757 5.704 14.640 hybrid contribution 0.299 1.834 -0.332 1.888 sum -11.369 -4.923 5.372 13.503 Atomic orbital electron populations 1.69711 1.07438 1.29100 1.36842 1.25910 0.94931 1.01284 0.92152 0.86222 0.79835 0.79851 0.79911 1.18972 1.20337 1.18903 1.19503 0.94588 0.89637 1.45445 0.90173 1.17590 0.90597 0.92042 0.86212 1.21762 1.03299 0.95944 1.09074 1.21480 0.90168 0.96156 0.95970 1.67165 1.13624 1.30202 1.15836 1.18001 0.84719 0.90966 0.93668 1.42524 1.19785 1.15676 1.53094 1.15316 0.78277 0.83452 0.80434 1.90984 1.67755 1.41923 1.39584 1.47312 1.24085 1.18691 1.47419 1.20744 0.93057 0.93682 0.92521 1.23119 0.97756 0.96323 1.00566 1.23040 0.98469 0.98318 0.97299 1.20208 0.88772 0.89553 0.93612 0.89021 1.22526 0.93895 0.88527 0.96425 1.86497 1.67109 1.45981 1.37323 1.21696 1.00361 0.95073 1.08871 0.90888 0.87917 0.85964 0.76087 0.90894 0.90741 0.84007 0.84047 0.91477 0.93278 0.77957 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.27 10.70 55.55 0.59 -19.67 16 2 C 0.07 1.82 5.41 -17.34 -0.09 1.73 16 3 Si 0.92 18.32 29.56 -169.99 -5.02 13.29 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.96 9.12 -37.65 -0.34 -12.30 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.14 3.84 5.57 -106.55 -0.59 3.24 16 10 C -0.28 -6.88 9.85 -39.07 -0.38 -7.26 16 11 C 0.12 2.84 11.10 -18.05 -0.20 2.64 16 12 N -0.55 -14.40 7.90 -12.76 -0.10 -14.50 16 13 C 0.35 8.85 7.41 -154.68 -1.15 7.71 16 14 N -0.66 -14.04 5.36 -15.86 -0.08 -14.12 16 15 C 0.72 15.09 8.29 -86.91 -0.72 14.37 16 16 O -0.53 -12.95 13.74 5.30 0.07 -12.88 16 17 N -0.63 -10.27 3.06 -173.87 -0.53 -10.80 16 18 C 0.12 1.56 6.34 -4.98 -0.03 1.52 16 19 C -0.16 -1.62 10.87 -35.91 -0.39 -2.01 16 20 C -0.15 -1.60 9.62 -35.91 -0.35 -1.94 16 21 C 0.18 2.48 3.41 -68.87 -0.23 2.25 16 22 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 23 C 0.07 0.86 6.72 37.16 0.25 1.11 16 24 O -0.56 -7.43 13.05 -35.23 -0.46 -7.89 16 25 C -0.23 -6.07 8.60 -38.46 -0.33 -6.40 16 26 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 27 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 28 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 29 H 0.40 7.29 7.81 -40.82 -0.32 6.97 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.07 1.09 6.79 -51.93 -0.35 0.74 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.37 3.40 9.12 45.56 0.42 3.82 16 37 H 0.13 3.44 6.25 -52.49 -0.33 3.11 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -33.48 317.88 -8.82 -42.31 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -3.51 Total: 14.84 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -4.56 Total: 4.64 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.12 Total: -59.10 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.39 Total: -20.77 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.48 -8.82 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.492 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds