Wall clock time and date at job start Fri Apr 10 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 119.99826 * 2 1 4 4 H 1.48507 * 109.47381 * 240.00103 * 3 2 1 5 5 H 1.48498 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00321 * 3 2 1 7 7 C 1.40033 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00260 * 179.81724 * 7 2 1 9 9 C 1.41549 * 119.99947 * 359.81790 * 7 2 1 10 10 C 1.41158 * 120.99709 * 147.46046 * 9 7 2 11 11 C 1.36592 * 119.12618 * 179.97438 * 10 9 7 12 12 N 1.32062 * 121.25824 * 359.97134 * 11 10 9 13 13 C 1.32496 * 122.23308 * 0.02600 * 12 11 10 14 14 N 1.39453 * 119.64766 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00459 * 354.25298 * 14 13 12 16 16 O 1.21576 * 119.99635 * 355.04913 * 15 14 13 17 17 N 1.34774 * 120.00232 * 175.04683 * 15 14 13 18 18 C 1.46989 * 127.25320 * 359.68862 * 17 15 14 19 19 C 1.50585 * 107.13245 * 179.91213 * 18 17 15 20 20 C 1.30391 * 110.12041 * 0.36415 * 19 18 17 21 21 C 1.46981 * 127.25450 * 180.02562 * 17 15 14 22 22 H 1.08995 * 109.90680 * 60.40734 * 21 17 15 23 23 C 1.53001 * 109.90176 * 299.34083 * 21 17 15 24 24 O 1.42902 * 109.47278 * 294.99611 * 23 21 17 25 25 C 1.38640 * 120.70224 * 359.97438 * 13 12 11 26 26 H 0.96993 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.43710 * 0.24973 * 10 9 7 28 28 H 1.07999 * 119.37011 * 180.02562 * 11 10 9 29 29 H 0.97006 * 120.00173 * 174.25217 * 14 13 12 30 30 H 1.09000 * 109.90019 * 299.40728 * 18 17 15 31 31 H 1.08992 * 109.90819 * 60.65474 * 18 17 15 32 32 H 1.08003 * 124.93828 * 180.14457 * 19 18 17 33 33 H 1.08001 * 124.94237 * 179.79479 * 20 19 18 34 34 H 1.08996 * 109.47272 * 55.00234 * 23 21 17 35 35 H 1.09005 * 109.47220 * 175.00403 * 23 21 17 36 36 H 0.96694 * 114.00411 * 179.97438 * 24 23 21 37 37 H 1.07998 * 120.66643 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0035 9 6 1.2999 -2.4386 0.0028 10 6 1.8180 -3.5789 -0.6482 11 6 1.1032 -4.7425 -0.6204 12 7 -0.0587 -4.8183 0.0027 13 6 -0.5931 -3.7809 0.6301 14 7 -1.8239 -3.9212 1.2705 15 6 -2.5180 -5.0705 1.1524 16 8 -2.1158 -5.9505 0.4162 17 7 -3.6578 -5.2443 1.8503 18 6 -4.2825 -4.2965 2.7841 19 6 -5.5360 -4.9483 3.3052 20 6 -5.6749 -6.1349 2.7830 21 6 -4.5344 -6.4240 1.8433 22 1 -3.9815 -7.2992 2.1843 23 6 -5.0716 -6.6653 0.4312 24 8 -5.9113 -5.5743 0.0481 25 6 0.0583 -2.5573 0.6567 26 1 -0.4850 0.8400 0.0004 27 1 2.7693 -3.5331 -1.1576 28 1 1.4962 -5.6175 -1.1168 29 1 -2.1806 -3.1916 1.8010 30 1 -3.6018 -4.0848 3.6087 31 1 -4.5357 -3.3737 2.2623 32 1 -6.2187 -4.4996 4.0117 33 1 -6.4895 -6.8121 2.9939 34 1 -4.2377 -6.7444 -0.2663 35 1 -5.6480 -7.5904 0.4148 36 1 -6.2876 -5.6600 -0.8385 37 1 -0.3780 -1.7120 1.1679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889253852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:50 Heat of formation + Delta-G solvation = -19.582387 kcal Electronic energy + Delta-G solvation = -22595.532034 eV Core-core repulsion = 19145.298052 eV Total energy + Delta-G solvation = -3450.233982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81516 -40.43500 -38.92802 -37.17295 -36.09745 -35.51480 -32.99607 -32.36707 -31.20741 -30.08113 -27.90631 -26.42762 -24.61032 -23.80943 -22.81491 -21.01493 -20.49566 -19.49065 -19.28283 -18.35281 -17.53149 -17.05528 -16.98115 -16.36833 -16.04580 -15.78455 -15.56893 -15.28370 -15.09680 -14.62770 -14.41688 -14.30266 -14.15354 -13.78529 -13.37371 -13.18155 -12.91783 -12.84471 -12.68296 -12.13691 -11.90124 -11.89894 -11.56570 -11.40851 -11.19486 -10.88651 -10.56943 -9.85093 -9.69259 -9.41967 -8.84002 -8.54643 -6.59478 0.79525 1.01118 1.27126 1.39942 1.42014 1.53597 1.57707 2.19077 2.22620 2.82278 2.88253 3.28629 3.61766 3.71855 3.81258 4.10287 4.20017 4.31678 4.47634 4.56098 4.59503 4.63983 4.71217 4.81122 4.89701 4.90562 5.08662 5.21131 5.26921 5.40291 5.47704 5.63348 5.85613 5.91082 5.99269 6.23429 6.54242 6.77585 6.81554 6.82126 6.86803 7.50706 7.83980 8.34232 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.004058 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.440914 B = 6898.332843 C = 7608.743404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.085 0.915 9 C 0.116 3.884 10 C -0.288 4.288 11 C 0.111 3.889 12 N -0.574 5.574 13 C 0.349 3.651 14 N -0.659 5.659 15 C 0.718 3.282 16 O -0.574 6.574 17 N -0.632 5.632 18 C 0.111 3.889 19 C -0.153 4.153 20 C -0.149 4.149 21 C 0.166 3.834 22 H 0.089 0.911 23 C 0.070 3.930 24 O -0.578 6.578 25 C -0.251 4.251 26 H 0.289 0.711 27 H 0.120 0.880 28 H 0.151 0.849 29 H 0.416 0.584 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.391 0.609 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 -4.923 6.723 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.519 4.519 8 H 0.103 0.897 9 C 0.107 3.893 10 C -0.311 4.311 11 C -0.042 4.042 12 N -0.294 5.294 13 C 0.122 3.878 14 N -0.307 5.307 15 C 0.420 3.580 16 O -0.449 6.449 17 N -0.371 5.371 18 C -0.011 4.011 19 C -0.171 4.171 20 C -0.166 4.166 21 C 0.063 3.937 22 H 0.107 0.893 23 C -0.009 4.009 24 O -0.385 6.385 25 C -0.276 4.276 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.168 0.832 29 H 0.253 0.747 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.196 0.804 33 H 0.194 0.806 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.239 0.761 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.040 -6.043 6.748 15.878 hybrid contribution 0.635 1.580 -0.658 1.825 sum -12.405 -4.464 6.091 14.523 Atomic orbital electron populations 1.69775 1.08901 1.30595 1.36314 1.26828 0.95743 1.04534 0.90952 0.85085 0.78488 0.75041 0.80071 1.18604 1.19262 1.18130 1.19824 0.95071 0.90412 1.46631 0.89672 1.18025 0.91321 0.93132 0.86779 1.21957 1.04113 0.95715 1.09360 1.21956 0.89714 0.97102 0.95455 1.67288 1.14503 1.30796 1.16825 1.18197 0.85721 0.90587 0.93285 1.42431 1.18859 1.16559 1.52893 1.15436 0.79283 0.82709 0.80595 1.90941 1.69325 1.43038 1.41548 1.47278 1.22831 1.20471 1.46562 1.21052 0.94664 0.93259 0.92163 1.23337 0.96771 0.96016 1.00946 1.23194 0.98031 0.99138 0.96285 1.20576 0.89592 0.88545 0.95021 0.89286 1.22426 0.93160 0.90065 0.95208 1.86440 1.66938 1.46347 1.38778 1.21657 1.00886 0.95243 1.09860 0.90035 0.86222 0.83201 0.74698 0.89823 0.90882 0.80429 0.80590 0.95473 0.89720 0.76074 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.99 10.70 21.84 0.23 -41.75 16 2 C 0.03 1.67 5.41 85.29 0.46 2.13 16 3 Si 0.99 36.81 29.56 68.60 2.03 38.84 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.49 -25.66 9.12 23.52 0.21 -25.45 16 8 H 0.09 4.24 7.85 -2.91 -0.02 4.21 16 9 C 0.12 6.32 5.57 -21.11 -0.12 6.20 16 10 C -0.29 -14.53 9.85 22.60 0.22 -14.31 16 11 C 0.11 5.51 11.10 84.27 0.94 6.45 16 12 N -0.57 -30.93 7.90 -194.28 -1.53 -32.46 16 13 C 0.35 18.10 7.41 132.76 0.98 19.08 16 14 N -0.66 -28.69 5.36 -322.37 -1.73 -30.42 16 15 C 0.72 30.74 8.29 179.05 1.48 32.22 16 16 O -0.57 -29.02 13.74 -3.95 -0.05 -29.08 16 17 N -0.63 -20.38 3.06 -822.27 -2.52 -22.90 16 18 C 0.11 2.64 6.34 85.50 0.54 3.19 16 19 C -0.15 -2.62 10.87 26.24 0.29 -2.33 16 20 C -0.15 -2.63 9.62 26.24 0.25 -2.37 16 21 C 0.17 4.33 3.41 44.12 0.15 4.48 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 23 C 0.07 1.79 6.72 71.98 0.48 2.28 16 24 O -0.58 -14.50 13.05 -148.98 -1.94 -16.44 16 25 C -0.25 -13.40 8.60 23.00 0.20 -13.20 16 26 H 0.29 13.22 8.29 -92.71 -0.77 12.45 16 27 H 0.12 5.45 8.06 -2.91 -0.02 5.43 16 28 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 29 H 0.42 15.40 7.81 -92.70 -0.72 14.68 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.03 0.91 6.79 -2.39 -0.02 0.90 16 35 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.39 6.68 9.12 -74.06 -0.68 6.00 16 37 H 0.13 6.82 6.25 -2.91 -0.02 6.80 16 Total: -1.00 -74.30 317.88 0.30 -74.00 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.28 Total: 41.85 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.10 Total: 18.37 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.55 Total: -127.53 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.00 Total: -45.52 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -74.30 0.30 -74.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.413 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds