Wall clock time and date at job start Fri Apr 10 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46769 * 124.34834 * 2 1 4 4 C 1.54473 * 105.47136 * 197.03970 * 3 2 1 5 5 H 1.09006 * 110.99852 * 92.72387 * 4 3 2 6 6 C 1.50700 * 110.96926 * 216.46759 * 4 3 2 7 7 O 1.21272 * 119.99914 * 353.83130 * 6 4 3 8 8 N 1.34775 * 120.00214 * 173.83768 * 6 4 3 9 9 C 1.37221 * 120.00097 * 5.60552 * 8 6 4 10 10 H 1.08003 * 119.99251 * 5.68187 * 9 8 6 11 11 C 1.38890 * 120.00237 * 185.68030 * 9 8 6 12 12 N 1.31410 * 119.99938 * 354.99143 * 11 9 8 13 13 Si 1.86792 * 119.99907 * 174.98859 * 11 9 8 14 14 H 1.48503 * 109.47458 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46914 * 120.00297 * 13 11 9 16 16 H 1.48499 * 109.47189 * 239.99972 * 13 11 9 17 17 C 1.39424 * 120.00470 * 185.60664 * 8 6 4 18 18 C 1.39067 * 119.70125 * 265.33069 * 17 8 6 19 19 C 1.38379 * 119.10094 * 179.72026 * 18 17 8 20 20 C 1.38819 * 118.49069 * 359.97438 * 19 18 17 21 21 C 1.38146 * 119.31770 * 0.02562 * 20 19 18 22 22 N 1.31888 * 120.84940 * 359.97438 * 21 20 19 23 23 C 1.54625 * 101.77147 * 334.58958 * 4 3 2 24 24 C 1.34418 * 124.34917 * 180.02562 * 2 1 3 25 25 O 1.21280 * 124.94303 * 359.53655 * 24 2 1 26 26 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47260 * 299.99321 * 1 2 3 28 28 H 1.09004 * 109.47672 * 59.99459 * 1 2 3 29 29 H 1.09002 * 110.24022 * 78.04549 * 3 2 1 30 30 H 1.08994 * 110.24743 * 316.04432 * 3 2 1 31 31 H 0.97002 * 120.00067 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.44468 * 359.69675 * 18 17 8 33 33 H 1.07996 * 120.74894 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.34371 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.57979 * 180.02562 * 21 20 19 36 36 H 1.08993 * 110.48978 * 143.47481 * 23 4 3 37 37 H 1.09004 * 110.48687 * 266.12382 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7008 0.7489 -0.4363 5 1 3.8269 0.8453 -1.5147 6 6 4.7717 1.5123 0.2996 7 8 4.4683 2.4353 1.0253 8 7 6.0666 1.1693 0.1510 9 6 6.4206 0.2026 -0.7561 10 1 5.6756 -0.2181 -1.4153 11 6 7.7369 -0.2349 -0.8267 12 7 8.6620 0.3446 -0.0952 13 14 8.1921 -1.6471 -1.9614 14 1 6.9777 -2.1229 -2.6715 15 1 9.1945 -1.1817 -2.9533 16 1 8.7662 -2.7591 -1.1620 17 6 7.0465 1.7968 0.9191 18 6 7.7259 2.8960 0.4051 19 6 8.6920 3.5128 1.1803 20 6 8.9459 3.0074 2.4481 21 6 8.2328 1.9119 2.8948 22 7 7.3175 1.3444 2.1334 23 6 3.6898 -0.7378 -0.0112 24 6 2.2234 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0070 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.3310 1.6426 1.0005 30 1 1.8981 1.9385 -0.7098 31 1 9.5813 0.0388 -0.1442 32 1 7.5028 3.2629 -0.5858 33 1 9.2361 4.3680 0.8075 34 1 9.6933 3.4659 3.0786 35 1 8.4266 1.5154 3.8806 36 1 4.2323 -1.3456 -0.7352 37 1 4.1197 -0.8533 0.9838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892463732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:03 Heat of formation + Delta-G solvation = -5.941514 kcal Electronic energy + Delta-G solvation = -23399.288977 eV Core-core repulsion = 19949.646509 eV Total energy + Delta-G solvation = -3449.642469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44239 -39.44072 -37.91464 -35.89292 -35.01100 -32.60302 -31.82617 -31.28647 -29.34310 -27.30335 -26.60958 -25.21108 -23.41638 -22.45633 -21.47435 -19.44357 -19.20017 -18.02820 -17.01342 -16.40157 -15.63020 -15.51238 -15.29750 -15.08109 -14.80133 -14.34544 -13.89788 -13.63315 -13.43037 -13.15252 -12.87765 -12.43826 -12.41499 -12.19516 -12.15788 -12.06271 -11.65569 -11.32065 -11.12607 -11.06012 -10.84521 -10.61612 -10.46708 -9.84937 -9.59354 -8.90024 -8.77628 -8.57355 -8.47921 -8.09961 -7.94352 -6.39296 -4.17998 2.26665 2.41667 2.87396 3.00408 3.12635 3.15665 3.22594 3.48561 3.86080 4.23770 4.71139 4.84383 4.92319 4.98237 5.28542 5.35882 5.43703 5.45648 5.64153 5.67581 5.74567 5.81210 5.89944 5.99704 6.03049 6.23658 6.30765 6.40322 6.43874 6.69140 6.69986 7.06195 7.10579 7.18674 7.29647 7.34523 7.73356 8.19939 8.42630 8.82014 9.11794 9.20591 9.56164 10.46819 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.006477 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.760266 B = 4322.135937 C = 5547.383247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.119 3.881 4 C -0.098 4.098 5 H 0.108 0.892 6 C 0.483 3.517 7 O -0.588 6.588 8 N -0.404 5.404 9 C -0.341 4.341 10 H 0.113 0.887 11 C 0.039 3.961 12 N -0.858 5.858 13 Si 0.930 3.070 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.278 1.278 17 C 0.464 3.536 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.208 4.208 21 C 0.113 3.887 22 N -0.488 5.488 23 C -0.133 4.133 24 C 0.518 3.482 25 O -0.543 6.543 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.275 0.725 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 3.440 -1.246 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.362 5.362 3 C -0.004 4.004 4 C -0.120 4.120 5 H 0.126 0.874 6 C 0.272 3.728 7 O -0.472 6.472 8 N -0.121 5.121 9 C -0.466 4.466 10 H 0.131 0.869 11 C -0.167 4.167 12 N -0.494 5.494 13 Si 0.756 3.244 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.204 1.204 17 C 0.238 3.762 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.228 4.228 21 C -0.045 4.045 22 N -0.200 5.200 23 C -0.173 4.173 24 C 0.307 3.693 25 O -0.421 6.421 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.307 2.536 -0.565 5.909 hybrid contribution 1.153 -0.031 -0.972 1.508 sum -4.154 2.505 -1.536 5.088 Atomic orbital electron populations 1.21498 0.78635 1.03320 1.01266 1.48252 1.06314 1.07861 1.73746 1.21999 0.88696 0.86190 1.03533 1.21857 0.93224 0.95016 1.01932 0.87367 1.19510 0.82524 0.86161 0.84627 1.90591 1.81707 1.31955 1.42974 1.41161 1.03062 1.34894 1.32995 1.19866 0.95617 1.16368 1.14795 0.86945 1.25268 0.95519 0.98351 0.97577 1.69506 1.02306 1.39410 1.38205 0.85789 0.79029 0.80324 0.79223 1.18960 1.20590 1.20382 1.17329 0.85964 0.86419 0.86499 1.21539 0.97576 0.97026 0.99736 1.21053 0.96419 0.98659 0.94081 1.21653 1.03148 1.00546 0.97503 1.22066 0.92045 0.92556 0.97844 1.67101 1.17182 1.29108 1.06593 1.22300 0.93124 0.95853 1.06056 1.21170 0.89707 0.84120 0.74279 1.90669 1.78918 1.21237 1.51291 0.90203 0.92262 0.92302 0.89286 0.90359 0.91274 0.86829 0.86685 0.86763 0.84751 0.86827 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.14 59.85 0.67 1.77 16 2 N -0.63 -9.50 3.33 -180.29 -0.60 -10.10 16 3 C 0.12 1.81 6.66 -3.12 -0.02 1.79 16 4 C -0.10 -1.71 2.55 -90.14 -0.23 -1.94 16 5 H 0.11 1.70 7.76 -51.93 -0.40 1.30 16 6 C 0.48 10.64 6.89 -10.99 -0.08 10.57 16 7 O -0.59 -14.30 15.55 5.56 0.09 -14.21 16 8 N -0.40 -9.60 2.74 -60.71 -0.17 -9.76 16 9 C -0.34 -7.88 8.61 -14.90 -0.13 -8.01 16 10 H 0.11 2.36 5.14 -52.48 -0.27 2.09 16 11 C 0.04 0.92 5.44 -17.49 -0.10 0.83 16 12 N -0.86 -21.41 9.71 55.49 0.54 -20.87 16 13 Si 0.93 18.76 29.55 -169.99 -5.02 13.74 16 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 15 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 C 0.46 11.36 2.95 -154.64 -0.46 10.90 16 18 C -0.14 -3.05 9.02 -39.22 -0.35 -3.41 16 19 C -0.08 -1.46 10.17 -39.31 -0.40 -1.86 16 20 C -0.21 -3.85 10.11 -39.40 -0.40 -4.24 16 21 C 0.11 2.33 11.18 -17.56 -0.20 2.14 16 22 N -0.49 -11.93 10.07 -12.34 -0.12 -12.05 16 23 C -0.13 -2.36 5.28 -26.74 -0.14 -2.50 16 24 C 0.52 9.25 8.02 -10.86 -0.09 9.16 16 25 O -0.54 -11.21 17.35 5.56 0.10 -11.11 16 26 H 0.08 0.98 7.53 -51.93 -0.39 0.59 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.49 7.06 -51.93 -0.37 1.13 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.11 1.97 6.97 -51.93 -0.36 1.61 16 37 H 0.11 2.13 7.89 -51.93 -0.41 1.72 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -30.91 314.97 -6.66 -37.57 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.30 Total: 6.87 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -1.92 Total: 15.18 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.35 Total: -52.79 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.18 Total: -25.32 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.91 -6.66 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.630 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds