Wall clock time and date at job start Fri Apr 10 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46769 * 124.34834 * 2 1 4 4 C 1.54473 * 105.47136 * 197.03970 * 3 2 1 5 5 H 1.09006 * 110.99852 * 92.72387 * 4 3 2 6 6 C 1.50700 * 110.96926 * 216.46759 * 4 3 2 7 7 O 1.21272 * 119.99914 * 353.83130 * 6 4 3 8 8 N 1.34775 * 120.00214 * 173.83768 * 6 4 3 9 9 C 1.37221 * 120.00097 * 5.60552 * 8 6 4 10 10 H 1.08003 * 119.99251 * 5.68187 * 9 8 6 11 11 C 1.38890 * 120.00237 * 185.68030 * 9 8 6 12 12 N 1.31410 * 119.99938 * 354.99143 * 11 9 8 13 13 Si 1.86792 * 119.99907 * 174.98859 * 11 9 8 14 14 H 1.48503 * 109.47458 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46914 * 120.00297 * 13 11 9 16 16 H 1.48499 * 109.47189 * 239.99972 * 13 11 9 17 17 C 1.39424 * 120.00470 * 185.60664 * 8 6 4 18 18 C 1.39067 * 119.70125 * 265.33069 * 17 8 6 19 19 C 1.38379 * 119.10094 * 179.72026 * 18 17 8 20 20 C 1.38819 * 118.49069 * 359.97438 * 19 18 17 21 21 C 1.38146 * 119.31770 * 0.02562 * 20 19 18 22 22 N 1.31888 * 120.84940 * 359.97438 * 21 20 19 23 23 C 1.54625 * 101.77147 * 334.58958 * 4 3 2 24 24 C 1.34418 * 124.34917 * 180.02562 * 2 1 3 25 25 O 1.21280 * 124.94303 * 359.53655 * 24 2 1 26 26 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47260 * 299.99321 * 1 2 3 28 28 H 1.09004 * 109.47672 * 59.99459 * 1 2 3 29 29 H 1.09002 * 110.24022 * 78.04549 * 3 2 1 30 30 H 1.08994 * 110.24743 * 316.04432 * 3 2 1 31 31 H 0.97002 * 120.00067 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.44468 * 359.69675 * 18 17 8 33 33 H 1.07996 * 120.74894 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.34371 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.57979 * 180.02562 * 21 20 19 36 36 H 1.08993 * 110.48978 * 143.47481 * 23 4 3 37 37 H 1.09004 * 110.48687 * 266.12382 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7008 0.7489 -0.4363 5 1 3.8269 0.8453 -1.5147 6 6 4.7717 1.5123 0.2996 7 8 4.4683 2.4353 1.0253 8 7 6.0666 1.1693 0.1510 9 6 6.4206 0.2026 -0.7561 10 1 5.6756 -0.2181 -1.4153 11 6 7.7369 -0.2349 -0.8267 12 7 8.6620 0.3446 -0.0952 13 14 8.1921 -1.6471 -1.9614 14 1 6.9777 -2.1229 -2.6715 15 1 9.1945 -1.1817 -2.9533 16 1 8.7662 -2.7591 -1.1620 17 6 7.0465 1.7968 0.9191 18 6 7.7259 2.8960 0.4051 19 6 8.6920 3.5128 1.1803 20 6 8.9459 3.0074 2.4481 21 6 8.2328 1.9119 2.8948 22 7 7.3175 1.3444 2.1334 23 6 3.6898 -0.7378 -0.0112 24 6 2.2234 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0070 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.3310 1.6426 1.0005 30 1 1.8981 1.9385 -0.7098 31 1 9.5813 0.0388 -0.1442 32 1 7.5028 3.2629 -0.5858 33 1 9.2361 4.3680 0.8075 34 1 9.6933 3.4659 3.0786 35 1 8.4266 1.5154 3.8806 36 1 4.2323 -1.3456 -0.7352 37 1 4.1197 -0.8533 0.9838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892463732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:03 Heat of formation + Delta-G solvation = -25.848835 kcal Electronic energy + Delta-G solvation = -23400.152224 eV Core-core repulsion = 19949.646509 eV Total energy + Delta-G solvation = -3450.505715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94070 -40.98890 -39.53871 -37.33975 -36.74378 -33.94959 -33.55321 -32.90754 -30.91990 -28.69151 -27.77119 -26.97822 -24.90973 -24.05918 -22.99073 -21.05085 -20.64401 -19.63048 -18.53962 -17.74537 -17.25127 -17.05723 -16.89444 -16.56474 -16.28894 -15.91309 -15.46077 -15.20385 -14.71311 -14.64044 -14.35436 -14.08568 -13.90171 -13.71237 -13.39504 -13.30237 -13.12194 -12.96992 -12.69213 -12.47449 -12.29137 -12.24038 -12.02614 -11.58436 -11.08678 -10.58521 -10.40923 -10.27860 -9.78735 -9.73524 -9.60721 -8.13466 -5.98128 0.66428 0.83115 1.38007 1.46460 1.48060 1.58374 1.81585 1.99492 2.22704 2.63677 3.16523 3.27324 3.36084 3.55749 3.88553 3.96622 4.13245 4.24483 4.36538 4.44279 4.50219 4.56212 4.63693 4.65581 4.72000 4.82943 4.86872 4.90244 5.03057 5.11550 5.40439 5.48849 5.52027 5.54330 5.70684 5.98516 6.09755 6.46693 7.04121 7.07200 7.41413 7.54819 7.83705 8.69735 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.006477 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.760266 B = 4322.135937 C = 5547.383247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.127 3.873 4 C -0.092 4.092 5 H 0.131 0.869 6 C 0.476 3.524 7 O -0.618 6.618 8 N -0.417 5.417 9 C -0.347 4.347 10 H 0.130 0.870 11 C -0.006 4.006 12 N -0.881 5.881 13 Si 0.989 3.011 14 H -0.249 1.249 15 H -0.280 1.280 16 H -0.291 1.291 17 C 0.435 3.565 18 C -0.161 4.161 19 C -0.073 4.073 20 C -0.197 4.197 21 C 0.095 3.905 22 N -0.529 5.529 23 C -0.128 4.128 24 C 0.517 3.483 25 O -0.576 6.576 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.268 0.732 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.116 0.884 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 4.216 -1.952 6.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C 0.004 3.996 4 C -0.113 4.113 5 H 0.149 0.851 6 C 0.266 3.734 7 O -0.504 6.504 8 N -0.134 5.134 9 C -0.473 4.473 10 H 0.148 0.852 11 C -0.208 4.208 12 N -0.518 5.518 13 Si 0.814 3.186 14 H -0.173 1.173 15 H -0.206 1.206 16 H -0.217 1.217 17 C 0.209 3.791 18 C -0.184 4.184 19 C -0.099 4.099 20 C -0.217 4.217 21 C -0.063 4.063 22 N -0.242 5.242 23 C -0.168 4.168 24 C 0.306 3.694 25 O -0.456 6.456 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.134 0.866 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.675 3.346 -1.280 6.712 hybrid contribution 1.277 -0.175 -0.642 1.440 sum -4.399 3.171 -1.921 5.753 Atomic orbital electron populations 1.21792 0.76146 1.03653 1.03650 1.48330 1.07777 1.06838 1.72154 1.21960 0.87544 0.86516 1.03552 1.21849 0.92993 0.93957 1.02546 0.85130 1.20235 0.82891 0.85898 0.84376 1.90552 1.82183 1.33357 1.44322 1.41452 1.03744 1.35043 1.33137 1.20279 0.96061 1.16165 1.14795 0.85244 1.26051 0.95617 1.00254 0.98914 1.69698 1.02072 1.40448 1.39609 0.84889 0.79037 0.77273 0.77432 1.17266 1.20612 1.21734 1.17656 0.86965 0.87475 0.87008 1.21665 0.99017 0.97550 1.00141 1.21530 0.95228 0.99105 0.94017 1.22096 1.02807 0.99266 0.97516 1.22676 0.91612 0.93336 0.98670 1.67061 1.19061 1.30754 1.07328 1.22181 0.93574 0.96249 1.04837 1.21051 0.89769 0.84239 0.74321 1.90650 1.79301 1.22499 1.53188 0.90910 0.90448 0.89316 0.90876 0.86939 0.92057 0.87417 0.82968 0.82332 0.82216 0.86609 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 11.14 127.77 1.42 3.24 16 2 N -0.62 -17.54 3.33 -842.90 -2.81 -20.35 16 3 C 0.13 3.63 6.66 86.83 0.58 4.21 16 4 C -0.09 -3.12 2.55 -10.49 -0.03 -3.15 16 5 H 0.13 3.85 7.76 -2.38 -0.02 3.84 16 6 C 0.48 21.20 6.89 87.66 0.60 21.81 16 7 O -0.62 -30.57 15.55 -3.00 -0.05 -30.62 16 8 N -0.42 -20.16 2.74 -464.37 -1.27 -21.43 16 9 C -0.35 -16.16 8.61 84.01 0.72 -15.44 16 10 H 0.13 5.35 5.14 -2.91 -0.01 5.33 16 11 C -0.01 -0.27 5.44 84.91 0.46 0.19 16 12 N -0.88 -44.62 9.71 21.65 0.21 -44.41 16 13 Si 0.99 38.50 29.55 68.60 2.03 40.53 16 14 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 15 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 16 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 17 C 0.43 21.65 2.95 132.90 0.39 22.04 16 18 C -0.16 -7.28 9.02 22.50 0.20 -7.07 16 19 C -0.07 -2.69 10.17 22.44 0.23 -2.46 16 20 C -0.20 -6.85 10.11 22.39 0.23 -6.63 16 21 C 0.09 3.85 11.18 84.66 0.95 4.80 16 22 N -0.53 -26.33 10.07 -192.95 -1.94 -28.27 16 23 C -0.13 -4.53 5.28 30.59 0.16 -4.37 16 24 C 0.52 18.09 8.02 87.90 0.71 18.79 16 25 O -0.58 -23.58 17.35 -3.03 -0.05 -23.63 16 26 H 0.07 1.64 7.53 -2.39 -0.02 1.63 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.07 2.39 7.06 -2.39 -0.02 2.37 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 35 H 0.16 5.38 8.06 -2.91 -0.02 5.35 16 36 H 0.12 3.99 6.97 -2.39 -0.02 3.97 16 37 H 0.09 3.49 7.89 -2.38 -0.02 3.47 16 Total: -1.00 -68.85 314.97 3.84 -65.01 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.09 Total: 27.22 kcal Atomic # 6 Polarization: 29.32 SS G_CDS: 6.63 Total: 35.95 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -5.81 Total: -114.46 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.10 Total: -54.25 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -68.85 3.84 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.163 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds