Wall clock time and date at job start Fri Apr 10 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34429 * 124.35021 * 2 1 4 4 O 1.21279 * 124.93802 * 0.40570 * 3 2 1 5 5 C 1.51279 * 110.11520 * 180.43153 * 3 2 1 6 6 C 1.54763 * 104.23784 * 16.18620 * 5 3 2 7 7 C 1.46761 * 124.35273 * 180.02562 * 2 1 3 8 8 H 1.08998 * 110.24877 * 282.05369 * 7 2 1 9 9 C 1.50703 * 110.24180 * 43.95907 * 7 2 1 10 10 O 1.21273 * 119.99825 * 36.21146 * 9 7 2 11 11 N 1.34775 * 119.99940 * 216.20130 * 9 7 2 12 12 C 1.37214 * 120.00053 * 8.64723 * 11 9 7 13 13 H 1.07996 * 120.00490 * 312.45525 * 12 11 9 14 14 C 1.38898 * 119.99714 * 132.45204 * 12 11 9 15 15 N 1.31409 * 119.99599 * 162.91070 * 14 12 11 16 16 Si 1.86797 * 120.00185 * 342.90348 * 14 12 11 17 17 H 1.48506 * 109.46735 * 95.24983 * 16 14 12 18 18 H 1.48495 * 109.47414 * 215.24962 * 16 14 12 19 19 H 1.48499 * 109.47150 * 335.25481 * 16 14 12 20 20 C 1.39434 * 120.00176 * 188.64827 * 11 9 7 21 21 C 1.39064 * 119.69321 * 13.55202 * 20 11 9 22 22 C 1.38382 * 119.09523 * 180.02562 * 21 20 11 23 23 C 1.38829 * 118.49357 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.30890 * 359.97438 * 23 22 21 25 25 N 1.31880 * 120.85477 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46992 * 269.97647 * 1 2 3 27 27 H 1.08999 * 109.47460 * 29.97364 * 1 2 3 28 28 H 1.08996 * 109.46876 * 149.98226 * 1 2 3 29 29 H 1.09002 * 110.48332 * 134.93005 * 5 3 2 30 30 H 1.08998 * 110.48394 * 257.43577 * 5 3 2 31 31 H 1.08998 * 111.04532 * 217.18697 * 6 5 3 32 32 H 1.09003 * 110.94554 * 93.37984 * 6 5 3 33 33 H 0.97008 * 119.99611 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.44970 * 359.97438 * 21 20 11 35 35 H 1.07999 * 120.75202 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.34075 * 179.72825 * 23 22 21 37 37 H 1.08003 * 119.57230 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 0.0070 5 6 3.6898 0.7379 -0.0107 6 6 3.7019 -0.7503 -0.4353 7 6 2.2931 -1.2116 -0.0005 8 1 2.3297 -1.6440 0.9993 9 6 1.7470 -2.2160 -0.9825 10 8 1.2600 -1.8395 -2.0274 11 7 1.8001 -3.5326 -0.6995 12 6 2.1852 -3.9510 0.5493 13 1 3.0677 -3.5331 1.0106 14 6 1.4399 -4.9121 1.2202 15 7 1.9631 -5.5560 2.2391 16 14 -0.3063 -5.2890 0.6741 17 1 -0.2966 -6.4558 -0.2445 18 1 -1.1401 -5.6015 1.8625 19 1 -0.8703 -4.1094 -0.0300 20 6 1.4637 -4.4697 -1.6757 21 6 1.3503 -4.0711 -3.0032 22 6 1.0153 -5.0112 -3.9618 23 6 0.8051 -6.3228 -3.5581 24 6 0.9360 -6.6483 -2.2219 25 7 1.2574 -5.7310 -1.3306 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5141 29 1 4.2323 1.3462 -0.7344 30 1 4.1203 0.8551 0.9838 31 1 4.4752 -1.3032 0.0979 32 1 3.8284 -0.8469 -1.5136 33 1 1.4427 -6.2275 2.7075 34 1 1.5204 -3.0417 -3.2820 35 1 0.9196 -4.7309 -5.0003 36 1 0.5381 -7.0798 -4.2806 37 1 0.7730 -7.6673 -1.9032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905997951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:14 Heat of formation + Delta-G solvation = 14.180728 kcal Electronic energy + Delta-G solvation = -23787.300848 eV Core-core repulsion = 20338.530945 eV Total energy + Delta-G solvation = -3448.769903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89997 -39.88647 -38.31006 -35.93520 -35.29955 -32.56721 -32.20487 -31.83352 -30.08525 -27.75379 -26.36839 -25.35583 -23.37115 -22.71421 -21.76143 -19.93092 -19.10896 -18.40576 -17.35083 -16.31978 -15.92548 -15.84231 -15.82488 -15.15220 -14.84624 -14.65224 -13.94261 -13.77948 -13.62993 -13.53788 -13.08926 -12.92201 -12.68860 -12.48005 -12.33528 -12.13530 -11.83256 -11.60920 -11.52700 -11.16894 -10.92399 -10.71566 -10.18011 -9.93935 -9.61594 -9.25247 -9.08186 -8.79796 -8.33677 -8.28523 -7.49991 -6.49546 -4.42818 1.62219 1.82360 2.77030 2.94207 3.29149 3.31766 3.35830 3.39588 3.75144 4.25106 4.51745 4.57034 4.67621 4.86993 5.05398 5.21898 5.24481 5.28090 5.41954 5.60347 5.60956 5.69225 5.76068 5.78171 5.86902 5.93945 6.00214 6.05811 6.21027 6.40222 6.53047 6.65418 6.78268 6.92235 7.33937 7.44934 7.73172 7.97495 8.30402 8.39337 8.77805 9.08664 9.20064 10.52524 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.006787 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.984138 B = 4124.583906 C = 4796.422628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.596 5.596 3 C 0.519 3.481 4 O -0.544 6.544 5 C -0.150 4.150 6 C -0.116 4.116 7 C 0.123 3.877 8 H 0.126 0.874 9 C 0.493 3.507 10 O -0.548 6.548 11 N -0.386 5.386 12 C -0.391 4.391 13 H 0.110 0.890 14 C 0.113 3.887 15 N -0.849 5.849 16 Si 0.919 3.081 17 H -0.251 1.251 18 H -0.309 1.309 19 H -0.286 1.286 20 C 0.349 3.651 21 C -0.208 4.208 22 C -0.065 4.065 23 C -0.224 4.224 24 C 0.123 3.877 25 N -0.486 5.486 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.277 0.723 34 H 0.168 0.832 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 2.267 -5.826 6.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.330 5.330 3 C 0.307 3.693 4 O -0.422 6.422 5 C -0.191 4.191 6 C -0.154 4.154 7 C 0.017 3.983 8 H 0.144 0.856 9 C 0.283 3.717 10 O -0.429 6.429 11 N -0.097 5.097 12 C -0.515 4.515 13 H 0.127 0.873 14 C -0.100 4.100 15 N -0.481 5.481 16 Si 0.751 3.249 17 H -0.177 1.177 18 H -0.239 1.239 19 H -0.212 1.212 20 C 0.121 3.879 21 C -0.231 4.231 22 C -0.091 4.091 23 C -0.246 4.246 24 C -0.035 4.035 25 N -0.202 5.202 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.696 2.757 -5.237 5.959 hybrid contribution -0.979 -0.530 -0.938 1.455 sum -0.282 2.227 -6.175 6.570 Atomic orbital electron populations 1.21548 0.77942 1.03406 1.01535 1.47910 1.06628 1.06277 1.72139 1.20814 0.89333 0.84067 0.75047 1.90680 1.78910 1.20979 1.51677 1.22346 0.94718 0.97263 1.04728 1.22561 0.94992 0.94849 1.03025 1.21699 0.90510 0.84446 1.01689 0.85643 1.20723 0.80350 0.82993 0.87660 1.90440 1.45964 1.79663 1.26786 1.41385 1.55050 1.02331 1.10948 1.18919 1.13696 1.28238 0.90666 0.87252 1.25264 0.98927 0.92752 0.93066 1.69729 1.37239 1.20822 1.20290 0.86259 0.81656 0.80128 0.76881 1.17705 1.23892 1.21226 1.18973 0.93495 0.88195 0.87284 1.22752 1.04851 1.03640 0.91835 1.21384 0.95825 0.92716 0.99220 1.21819 1.08102 0.97290 0.97373 1.22291 0.94371 0.97921 0.88940 1.67212 1.14869 1.01177 1.36965 0.92577 0.90889 0.90718 0.88009 0.87523 0.88072 0.89796 0.91268 0.81480 0.85609 0.85808 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.56 59.84 0.63 2.28 16 2 N -0.60 -10.42 3.01 -174.03 -0.52 -10.95 16 3 C 0.52 8.83 8.02 -10.86 -0.09 8.74 16 4 O -0.54 -10.84 17.59 5.56 0.10 -10.74 16 5 C -0.15 -1.90 6.86 -26.67 -0.18 -2.08 16 6 C -0.12 -1.59 6.69 -25.03 -0.17 -1.76 16 7 C 0.12 2.15 3.22 -68.16 -0.22 1.93 16 8 H 0.13 2.25 6.37 -51.93 -0.33 1.92 16 9 C 0.49 10.20 5.59 -10.98 -0.06 10.14 16 10 O -0.55 -11.82 12.57 5.56 0.07 -11.75 16 11 N -0.39 -8.83 2.26 -60.71 -0.14 -8.97 16 12 C -0.39 -9.59 8.30 -14.90 -0.12 -9.71 16 13 H 0.11 2.68 7.35 -52.49 -0.39 2.29 16 14 C 0.11 2.91 4.90 -17.49 -0.09 2.82 16 15 N -0.85 -22.71 13.96 55.49 0.77 -21.94 16 16 Si 0.92 22.19 24.59 -169.99 -4.18 18.01 16 17 H -0.25 -5.81 4.98 56.52 0.28 -5.53 16 18 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 C 0.35 7.92 5.98 -154.64 -0.92 7.00 16 21 C -0.21 -4.17 8.88 -39.22 -0.35 -4.51 16 22 C -0.07 -1.08 10.17 -39.31 -0.40 -1.48 16 23 C -0.22 -3.58 10.11 -39.40 -0.40 -3.97 16 24 C 0.12 2.29 9.93 -17.56 -0.17 2.11 16 25 N -0.49 -11.02 4.74 -12.34 -0.06 -11.08 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 28 H 0.07 1.37 6.60 -51.93 -0.34 1.02 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.17 7.91 -51.93 -0.41 0.75 16 33 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.17 3.39 5.11 -53.10 -0.27 3.12 16 35 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.15 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -31.08 303.44 -6.29 -37.37 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.37 Total: 3.98 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -2.54 Total: 11.49 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.05 Total: -52.93 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.49 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.18 Total: 18.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.08 -6.29 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905997951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds