Wall clock time and date at job start Fri Apr 10 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34429 * 124.35021 * 2 1 4 4 O 1.21279 * 124.93802 * 0.40570 * 3 2 1 5 5 C 1.51279 * 110.11520 * 180.43153 * 3 2 1 6 6 C 1.54763 * 104.23784 * 16.18620 * 5 3 2 7 7 C 1.46761 * 124.35273 * 180.02562 * 2 1 3 8 8 H 1.08998 * 110.24877 * 282.05369 * 7 2 1 9 9 C 1.50703 * 110.24180 * 43.95907 * 7 2 1 10 10 O 1.21273 * 119.99825 * 36.21146 * 9 7 2 11 11 N 1.34775 * 119.99940 * 216.20130 * 9 7 2 12 12 C 1.37214 * 120.00053 * 8.64723 * 11 9 7 13 13 H 1.07996 * 120.00490 * 312.45525 * 12 11 9 14 14 C 1.38898 * 119.99714 * 132.45204 * 12 11 9 15 15 N 1.31409 * 119.99599 * 162.91070 * 14 12 11 16 16 Si 1.86797 * 120.00185 * 342.90348 * 14 12 11 17 17 H 1.48506 * 109.46735 * 95.24983 * 16 14 12 18 18 H 1.48495 * 109.47414 * 215.24962 * 16 14 12 19 19 H 1.48499 * 109.47150 * 335.25481 * 16 14 12 20 20 C 1.39434 * 120.00176 * 188.64827 * 11 9 7 21 21 C 1.39064 * 119.69321 * 13.55202 * 20 11 9 22 22 C 1.38382 * 119.09523 * 180.02562 * 21 20 11 23 23 C 1.38829 * 118.49357 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.30890 * 359.97438 * 23 22 21 25 25 N 1.31880 * 120.85477 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46992 * 269.97647 * 1 2 3 27 27 H 1.08999 * 109.47460 * 29.97364 * 1 2 3 28 28 H 1.08996 * 109.46876 * 149.98226 * 1 2 3 29 29 H 1.09002 * 110.48332 * 134.93005 * 5 3 2 30 30 H 1.08998 * 110.48394 * 257.43577 * 5 3 2 31 31 H 1.08998 * 111.04532 * 217.18697 * 6 5 3 32 32 H 1.09003 * 110.94554 * 93.37984 * 6 5 3 33 33 H 0.97008 * 119.99611 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.44970 * 359.97438 * 21 20 11 35 35 H 1.07999 * 120.75202 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.34075 * 179.72825 * 23 22 21 37 37 H 1.08003 * 119.57230 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 0.0070 5 6 3.6898 0.7379 -0.0107 6 6 3.7019 -0.7503 -0.4353 7 6 2.2931 -1.2116 -0.0005 8 1 2.3297 -1.6440 0.9993 9 6 1.7470 -2.2160 -0.9825 10 8 1.2600 -1.8395 -2.0274 11 7 1.8001 -3.5326 -0.6995 12 6 2.1852 -3.9510 0.5493 13 1 3.0677 -3.5331 1.0106 14 6 1.4399 -4.9121 1.2202 15 7 1.9631 -5.5560 2.2391 16 14 -0.3063 -5.2890 0.6741 17 1 -0.2966 -6.4558 -0.2445 18 1 -1.1401 -5.6015 1.8625 19 1 -0.8703 -4.1094 -0.0300 20 6 1.4637 -4.4697 -1.6757 21 6 1.3503 -4.0711 -3.0032 22 6 1.0153 -5.0112 -3.9618 23 6 0.8051 -6.3228 -3.5581 24 6 0.9360 -6.6483 -2.2219 25 7 1.2574 -5.7310 -1.3306 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5141 29 1 4.2323 1.3462 -0.7344 30 1 4.1203 0.8551 0.9838 31 1 4.4752 -1.3032 0.0979 32 1 3.8284 -0.8469 -1.5136 33 1 1.4427 -6.2275 2.7075 34 1 1.5204 -3.0417 -3.2820 35 1 0.9196 -4.7309 -5.0003 36 1 0.5381 -7.0798 -4.2806 37 1 0.7730 -7.6673 -1.9032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905997951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:14 Heat of formation + Delta-G solvation = -5.361980 kcal Electronic energy + Delta-G solvation = -23788.148283 eV Core-core repulsion = 20338.530945 eV Total energy + Delta-G solvation = -3449.617338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40529 -41.29876 -39.82453 -37.36991 -36.96462 -34.10709 -33.78486 -33.31152 -31.55959 -29.12521 -27.69031 -27.14797 -24.78636 -24.16951 -23.09937 -21.43717 -20.71187 -19.93256 -18.84622 -17.72627 -17.59393 -17.24624 -17.19206 -16.67693 -16.50187 -16.18020 -15.48228 -15.31500 -15.13436 -14.81322 -14.70405 -14.39851 -14.25475 -13.95778 -13.65900 -13.53540 -13.24211 -13.02105 -12.98907 -12.75454 -12.44820 -12.12716 -12.00852 -11.55854 -10.98150 -10.84502 -10.68181 -10.48154 -9.93197 -9.79630 -9.10118 -8.44675 -6.34984 0.15807 0.37527 1.28187 1.39852 1.44585 1.46627 1.54147 1.90491 2.25679 2.35334 2.93708 3.07623 3.32050 3.47602 3.69097 3.79497 4.04634 4.05853 4.15724 4.24908 4.27196 4.37159 4.40298 4.52138 4.63960 4.66792 4.79712 4.95791 4.96814 5.05181 5.14585 5.28385 5.38870 5.39657 5.83636 5.91444 6.02891 6.19180 6.65620 7.02225 7.04070 7.34566 7.47895 8.59521 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.006787 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.984138 B = 4124.583906 C = 4796.422628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.604 5.604 3 C 0.512 3.488 4 O -0.577 6.577 5 C -0.135 4.135 6 C -0.107 4.107 7 C 0.123 3.877 8 H 0.118 0.882 9 C 0.493 3.507 10 O -0.561 6.561 11 N -0.403 5.403 12 C -0.377 4.377 13 H 0.103 0.897 14 C 0.083 3.917 15 N -0.884 5.884 16 Si 0.957 3.043 17 H -0.237 1.237 18 H -0.317 1.317 19 H -0.310 1.310 20 C 0.314 3.686 21 C -0.222 4.222 22 C -0.057 4.057 23 C -0.199 4.199 24 C 0.101 3.899 25 N -0.525 5.525 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.278 0.722 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 1.826 -7.764 8.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.302 3.698 4 O -0.458 6.458 5 C -0.174 4.174 6 C -0.145 4.145 7 C 0.016 3.984 8 H 0.135 0.865 9 C 0.284 3.716 10 O -0.443 6.443 11 N -0.116 5.116 12 C -0.503 4.503 13 H 0.121 0.879 14 C -0.125 4.125 15 N -0.518 5.518 16 Si 0.791 3.209 17 H -0.162 1.162 18 H -0.248 1.248 19 H -0.238 1.238 20 C 0.087 3.913 21 C -0.244 4.244 22 C -0.083 4.083 23 C -0.220 4.220 24 C -0.055 4.055 25 N -0.242 5.242 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.296 2.288 -7.197 7.663 hybrid contribution -1.194 -0.417 -0.525 1.370 sum 0.102 1.871 -7.722 7.947 Atomic orbital electron populations 1.21533 0.78352 1.02553 1.02121 1.48096 1.06799 1.06690 1.72093 1.21571 0.91106 0.83265 0.73879 1.90660 1.79892 1.22102 1.53164 1.22399 0.91620 0.96309 1.07073 1.22621 0.92899 0.95745 1.03255 1.21752 0.92495 0.83775 1.00373 0.86475 1.21209 0.79596 0.82843 0.87962 1.90421 1.46525 1.79782 1.27527 1.41482 1.56294 1.03213 1.10646 1.18873 1.12857 1.27240 0.91292 0.87939 1.25646 1.00463 0.93225 0.93209 1.69771 1.38083 1.22301 1.21687 0.85681 0.79717 0.79482 0.76053 1.16203 1.24783 1.23777 1.19261 0.95326 0.88502 0.88242 1.22800 1.05812 1.04227 0.91594 1.21891 0.93589 0.92299 1.00477 1.22301 1.04695 0.97999 0.96969 1.22893 0.94221 0.98335 0.90092 1.67051 1.16347 1.01790 1.39040 0.91334 0.90485 0.92697 0.85583 0.84708 0.85897 0.89895 0.91231 0.82249 0.81467 0.80976 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.32 10.56 127.77 1.35 4.67 16 2 N -0.60 -21.00 3.01 -823.08 -2.48 -23.48 16 3 C 0.51 16.83 8.02 87.90 0.71 17.53 16 4 O -0.58 -22.62 17.59 -3.03 -0.05 -22.68 16 5 C -0.13 -3.03 6.86 30.63 0.21 -2.82 16 6 C -0.11 -2.73 6.69 31.70 0.21 -2.52 16 7 C 0.12 4.25 3.22 44.70 0.14 4.39 16 8 H 0.12 4.25 6.37 -2.39 -0.02 4.23 16 9 C 0.49 20.61 5.59 87.66 0.49 21.10 16 10 O -0.56 -24.46 12.57 -3.01 -0.04 -24.50 16 11 N -0.40 -18.71 2.26 -464.37 -1.05 -19.76 16 12 C -0.38 -18.87 8.30 84.01 0.70 -18.17 16 13 H 0.10 5.12 7.35 -2.91 -0.02 5.10 16 14 C 0.08 4.38 4.90 84.91 0.42 4.80 16 15 N -0.88 -48.25 13.96 21.65 0.30 -47.95 16 16 Si 0.96 46.61 24.59 68.60 1.69 48.30 16 17 H -0.24 -10.77 4.98 99.48 0.50 -10.28 16 18 H -0.32 -15.41 7.11 99.48 0.71 -14.71 16 19 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 20 C 0.31 14.19 5.98 132.90 0.79 14.99 16 21 C -0.22 -8.61 8.88 22.50 0.20 -8.41 16 22 C -0.06 -1.68 10.17 22.45 0.23 -1.45 16 23 C -0.20 -5.48 10.11 22.39 0.23 -5.25 16 24 C 0.10 3.53 9.93 84.66 0.84 4.37 16 25 N -0.52 -23.44 4.74 -192.95 -0.91 -24.36 16 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.08 2.53 7.93 -2.39 -0.02 2.52 16 28 H 0.05 2.08 6.60 -2.39 -0.02 2.07 16 29 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 2.15 7.91 -2.39 -0.02 2.14 16 33 H 0.28 14.40 8.31 -92.70 -0.77 13.63 16 34 H 0.16 6.39 5.11 -12.59 -0.06 6.32 16 35 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.17 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -69.57 303.44 4.81 -64.76 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.84 Total: 16.43 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 6.51 Total: 33.23 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -4.14 Total: -115.55 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.09 Total: -47.17 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.69 Total: 48.30 kcal Total: -69.57 4.81 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905997951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.400 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds