Wall clock time and date at job start Fri Apr 10 2020 17:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48495 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46757 * 60.00319 * 3 2 1 6 6 H 1.48496 * 109.47225 * 300.00393 * 3 2 1 7 7 C 1.38807 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00488 * 155.60528 * 7 2 1 9 9 N 1.36940 * 120.00110 * 335.61148 * 7 2 1 10 10 C 1.48141 * 127.84124 * 158.92346 * 9 7 2 11 11 C 1.54387 * 104.61828 * 140.41747 * 10 9 7 12 12 H 1.09002 * 117.61678 * 242.77072 * 11 10 9 13 13 C 1.54288 * 104.95807 * 23.86913 * 11 10 9 14 14 H 1.09004 * 121.81182 * 222.17563 * 13 11 10 15 15 C 1.48142 * 127.83440 * 338.61056 * 9 7 2 16 16 C 1.52997 * 59.72074 * 114.13877 * 13 11 10 17 17 H 1.08995 * 117.44608 * 252.34497 * 16 13 11 18 18 N 1.46502 * 117.40408 * 107.66444 * 16 13 11 19 19 C 1.34783 * 119.99932 * 135.77472 * 18 16 13 20 20 O 1.21530 * 119.99893 * 359.97438 * 19 18 16 21 21 C 1.47982 * 120.00093 * 180.02562 * 19 18 16 22 22 C 1.39914 * 120.91288 * 359.71645 * 21 19 18 23 23 C 1.38013 * 119.01324 * 179.73470 * 22 21 19 24 24 N 1.31997 * 120.88615 * 0.55255 * 23 22 21 25 25 O 1.41600 * 118.98647 * 179.73989 * 24 23 22 26 26 C 1.31997 * 122.02310 * 359.71939 * 24 23 22 27 27 C 1.38007 * 120.89174 * 359.97438 * 26 24 23 28 28 H 0.96996 * 119.99488 * 174.47292 * 1 2 3 29 29 H 1.08999 * 110.40795 * 259.20345 * 10 9 7 30 30 H 1.09000 * 110.40734 * 21.63298 * 10 9 7 31 31 H 1.09001 * 110.40815 * 338.36529 * 15 9 7 32 32 H 1.09002 * 110.41059 * 100.80042 * 15 9 7 33 33 H 0.96995 * 120.00375 * 315.76919 * 18 16 13 34 34 H 1.08007 * 120.49536 * 359.97438 * 22 21 19 35 35 H 1.07990 * 119.55686 * 180.27303 * 23 22 21 36 36 H 1.07998 * 119.54968 * 180.02562 * 26 24 23 37 37 H 1.07996 * 120.49550 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0180 -1.2436 -0.3868 9 7 1.4174 -2.3354 0.4886 10 6 1.7767 -3.7441 0.2045 11 6 1.6238 -4.4664 1.5604 12 1 2.5169 -4.9110 1.9996 13 6 0.6309 -3.6003 2.3632 14 1 0.7829 -3.3824 3.4204 15 6 0.2751 -2.4306 1.4271 16 6 0.2458 -5.0170 1.9328 17 1 -0.4881 -5.1171 1.1332 18 7 0.1889 -6.0461 2.9741 19 6 -0.8424 -6.9132 3.0089 20 8 -1.7253 -6.8411 2.1768 21 6 -0.9003 -7.9522 4.0610 22 6 0.1081 -8.0556 5.0254 23 6 0.0118 -9.0359 5.9921 24 7 -1.0073 -9.8746 6.0074 25 8 -1.0629 -10.8686 7.0144 26 6 -1.9763 -9.8151 5.1132 27 6 -1.9621 -8.8617 4.1154 28 1 -0.4849 -0.8361 -0.0809 29 1 1.0945 -4.1693 -0.5317 30 1 2.8062 -3.8103 -0.1474 31 1 0.1730 -1.5068 1.9966 32 1 -0.6453 -2.6475 0.8849 33 1 0.8933 -6.1034 3.6383 34 1 0.9473 -7.3758 5.0159 35 1 0.7829 -9.1207 6.7434 36 1 -2.7917 -10.5214 5.1635 37 1 -2.7585 -8.8185 3.3873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958160163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:23 Heat of formation + Delta-G solvation = 91.516893 kcal Electronic energy + Delta-G solvation = -21659.886515 eV Core-core repulsion = 18214.470160 eV Total energy + Delta-G solvation = -3445.416355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.90291 -40.11735 -38.70432 -35.16077 -34.88645 -33.13115 -32.34897 -30.66403 -30.01979 -27.57457 -26.10599 -25.14477 -24.80359 -22.29672 -21.14993 -20.57205 -19.62663 -18.91456 -17.93444 -17.57308 -17.34639 -16.48273 -16.28432 -15.99973 -15.08167 -14.99346 -14.76440 -14.14411 -13.91911 -13.75010 -13.26575 -13.12519 -12.72831 -12.52595 -12.19410 -11.71581 -11.60109 -11.01226 -10.77360 -10.70234 -10.51017 -10.42026 -10.33267 -10.14362 -9.79421 -9.77882 -9.41608 -9.08732 -8.82007 -8.56043 -7.10676 -6.22738 -3.29680 -0.36737 0.01994 2.03340 2.06666 2.48176 2.87541 3.44805 3.47947 3.60874 3.71688 3.85964 3.91431 3.96192 3.97863 4.27106 4.47362 4.75306 4.79963 4.83939 5.00969 5.09518 5.11296 5.18898 5.31301 5.56395 5.60893 5.72299 5.83529 6.19653 6.20721 6.37440 6.46404 6.55514 6.58714 6.82968 6.86535 7.05487 7.63941 7.70426 8.34967 8.86878 9.67750 10.28886 11.13287 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.045060 B = 0.002696 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.238487 B =10384.178600 C =10552.076611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.075 2.925 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.334 4.334 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.154 3.846 11 C -0.176 4.176 12 H 0.108 0.892 13 C -0.173 4.173 14 H 0.107 0.893 15 C 0.165 3.835 16 C 0.094 3.906 17 H 0.136 0.864 18 N -0.685 5.685 19 C 0.560 3.440 20 O -0.516 6.516 21 C -0.088 4.088 22 C -0.092 4.092 23 C 0.071 3.929 24 N -0.108 5.108 25 O -0.540 6.540 26 C 0.071 3.929 27 C -0.064 4.064 28 H 0.270 0.730 29 H 0.027 0.973 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.400 0.600 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -15.160 8.578 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.904 3.096 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.461 4.461 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.197 4.197 12 H 0.126 0.874 13 C -0.194 4.194 14 H 0.125 0.875 15 C 0.038 3.962 16 C -0.011 4.011 17 H 0.154 0.846 18 N -0.334 5.334 19 C 0.345 3.655 20 O -0.392 6.392 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.074 4.074 24 N 0.215 4.785 25 O -0.596 6.596 26 C -0.074 4.074 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.235 0.765 34 H 0.184 0.816 35 H 0.206 0.794 36 H 0.207 0.793 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.353 -13.592 8.250 15.903 hybrid contribution 0.675 -1.881 0.541 2.070 sum 0.322 -15.472 8.792 17.799 Atomic orbital electron populations 1.70713 1.06576 1.30436 1.47947 1.25903 0.96588 1.01322 0.98833 0.83392 0.74196 0.75205 0.76809 1.21768 1.21569 1.21948 1.19779 0.97300 0.86683 1.42335 0.91584 1.45260 1.37249 1.00176 1.49274 1.21138 0.98886 0.86081 0.91160 1.24341 0.92180 1.02366 1.00824 0.87375 1.24433 1.03794 0.91389 0.99806 0.87481 1.21056 0.90879 0.94307 0.89933 1.21934 0.99848 0.86673 0.92664 0.84614 1.45244 1.24536 1.31829 1.31789 1.17816 0.82445 0.80973 0.84238 1.90849 1.37442 1.71767 1.39129 1.20663 0.95659 0.97150 0.96407 1.22022 0.99275 0.97397 0.92445 1.22615 0.93535 0.90628 1.00622 1.43378 1.07343 1.14191 1.13637 1.97688 1.95310 1.33894 1.32755 1.22721 0.94852 1.00364 0.89508 1.22009 0.98438 0.90979 0.96864 0.91901 0.95487 0.92580 0.91218 0.95242 0.76485 0.81563 0.79378 0.79262 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 12.82 55.49 0.71 -26.30 16 2 C -0.02 -0.68 5.12 -17.43 -0.09 -0.77 16 3 Si 1.07 24.60 29.98 -169.99 -5.10 19.51 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.33 -9.07 10.19 -15.06 -0.15 -9.23 16 8 H 0.07 1.79 7.94 -52.49 -0.42 1.37 16 9 N -0.60 -14.38 3.23 -169.12 -0.55 -14.93 16 10 C 0.15 2.99 7.04 -2.41 -0.02 2.97 16 11 C -0.18 -2.65 7.06 -89.22 -0.63 -3.28 16 12 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 13 C -0.17 -2.81 7.04 -89.43 -0.63 -3.44 16 14 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.16 3.59 4.98 -2.63 -0.01 3.58 16 16 C 0.09 1.30 5.98 -67.93 -0.41 0.90 16 17 H 0.14 2.18 7.40 -51.93 -0.38 1.80 16 18 N -0.69 -6.70 5.52 -54.71 -0.30 -7.01 16 19 C 0.56 5.83 7.79 -12.26 -0.10 5.73 16 20 O -0.52 -7.40 16.01 5.34 0.09 -7.32 16 21 C -0.09 -0.62 5.91 -104.65 -0.62 -1.24 16 22 C -0.09 -0.44 9.61 -39.04 -0.38 -0.82 16 23 C 0.07 0.48 10.67 -17.56 -0.19 0.29 16 24 N -0.11 -1.12 3.58 -13.30 -0.05 -1.17 16 25 O -0.54 -9.14 20.04 -11.47 -0.23 -9.37 16 26 C 0.07 0.52 10.67 -17.57 -0.19 0.33 16 27 C -0.06 -0.41 9.68 -39.04 -0.38 -0.78 16 28 H 0.27 7.97 6.41 -40.82 -0.26 7.70 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.69 7.47 -51.93 -0.39 1.30 16 32 H 0.03 0.68 7.66 -51.93 -0.40 0.28 16 33 H 0.40 2.53 6.96 -40.82 -0.28 2.24 16 34 H 0.17 0.25 6.53 -52.48 -0.34 -0.09 16 35 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.18 0.92 7.74 -52.49 -0.41 0.51 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -38.27 321.04 -8.58 -46.85 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.21 Total: 0.64 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.78 Total: -5.76 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.18 Total: -49.40 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.14 Total: -16.69 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.27 -8.58 -46.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958160163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.370 kcal (2) G-P(sol) polarization free energy of solvation -38.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds