Wall clock time and date at job start Fri Apr 10 2020 17:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48495 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46757 * 60.00319 * 3 2 1 6 6 H 1.48496 * 109.47225 * 300.00393 * 3 2 1 7 7 C 1.38807 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00488 * 155.60528 * 7 2 1 9 9 N 1.36940 * 120.00110 * 335.61148 * 7 2 1 10 10 C 1.48141 * 127.84124 * 158.92346 * 9 7 2 11 11 C 1.54387 * 104.61828 * 140.41747 * 10 9 7 12 12 H 1.09002 * 117.61678 * 242.77072 * 11 10 9 13 13 C 1.54288 * 104.95807 * 23.86913 * 11 10 9 14 14 H 1.09004 * 121.81182 * 222.17563 * 13 11 10 15 15 C 1.48142 * 127.83440 * 338.61056 * 9 7 2 16 16 C 1.52997 * 59.72074 * 114.13877 * 13 11 10 17 17 H 1.08995 * 117.44608 * 252.34497 * 16 13 11 18 18 N 1.46502 * 117.40408 * 107.66444 * 16 13 11 19 19 C 1.34783 * 119.99932 * 135.77472 * 18 16 13 20 20 O 1.21530 * 119.99893 * 359.97438 * 19 18 16 21 21 C 1.47982 * 120.00093 * 180.02562 * 19 18 16 22 22 C 1.39914 * 120.91288 * 359.71645 * 21 19 18 23 23 C 1.38013 * 119.01324 * 179.73470 * 22 21 19 24 24 N 1.31997 * 120.88615 * 0.55255 * 23 22 21 25 25 O 1.41600 * 118.98647 * 179.73989 * 24 23 22 26 26 C 1.31997 * 122.02310 * 359.71939 * 24 23 22 27 27 C 1.38007 * 120.89174 * 359.97438 * 26 24 23 28 28 H 0.96996 * 119.99488 * 174.47292 * 1 2 3 29 29 H 1.08999 * 110.40795 * 259.20345 * 10 9 7 30 30 H 1.09000 * 110.40734 * 21.63298 * 10 9 7 31 31 H 1.09001 * 110.40815 * 338.36529 * 15 9 7 32 32 H 1.09002 * 110.41059 * 100.80042 * 15 9 7 33 33 H 0.96995 * 120.00375 * 315.76919 * 18 16 13 34 34 H 1.08007 * 120.49536 * 359.97438 * 22 21 19 35 35 H 1.07990 * 119.55686 * 180.27303 * 23 22 21 36 36 H 1.07998 * 119.54968 * 180.02562 * 26 24 23 37 37 H 1.07996 * 120.49550 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0180 -1.2436 -0.3868 9 7 1.4174 -2.3354 0.4886 10 6 1.7767 -3.7441 0.2045 11 6 1.6238 -4.4664 1.5604 12 1 2.5169 -4.9110 1.9996 13 6 0.6309 -3.6003 2.3632 14 1 0.7829 -3.3824 3.4204 15 6 0.2751 -2.4306 1.4271 16 6 0.2458 -5.0170 1.9328 17 1 -0.4881 -5.1171 1.1332 18 7 0.1889 -6.0461 2.9741 19 6 -0.8424 -6.9132 3.0089 20 8 -1.7253 -6.8411 2.1768 21 6 -0.9003 -7.9522 4.0610 22 6 0.1081 -8.0556 5.0254 23 6 0.0118 -9.0359 5.9921 24 7 -1.0073 -9.8746 6.0074 25 8 -1.0629 -10.8686 7.0144 26 6 -1.9763 -9.8151 5.1132 27 6 -1.9621 -8.8617 4.1154 28 1 -0.4849 -0.8361 -0.0809 29 1 1.0945 -4.1693 -0.5317 30 1 2.8062 -3.8103 -0.1474 31 1 0.1730 -1.5068 1.9966 32 1 -0.6453 -2.6475 0.8849 33 1 0.8933 -6.1034 3.6383 34 1 0.9473 -7.3758 5.0159 35 1 0.7829 -9.1207 6.7434 36 1 -2.7917 -10.5214 5.1635 37 1 -2.7585 -8.8185 3.3873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958160163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:22 Heat of formation + Delta-G solvation = 63.516653 kcal Electronic energy + Delta-G solvation = -21661.100697 eV Core-core repulsion = 18214.470160 eV Total energy + Delta-G solvation = -3446.630537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54617 -41.18195 -39.95354 -36.42806 -35.77842 -34.54602 -32.99859 -32.11360 -31.15431 -29.18501 -27.58418 -26.24711 -25.41151 -23.65033 -22.09638 -22.03900 -21.02238 -19.66449 -19.51593 -18.62629 -18.11208 -17.44615 -16.87300 -16.69238 -16.23857 -15.98610 -15.82793 -15.53698 -15.35357 -15.18339 -14.96538 -13.88241 -13.74712 -13.67100 -13.33394 -13.19216 -12.66057 -12.58138 -12.34926 -12.26331 -11.89379 -11.83555 -11.66292 -11.44937 -10.86697 -10.81789 -10.81351 -10.62682 -10.12366 -9.87506 -9.09242 -8.37980 -5.40893 -0.99632 -0.46090 1.33222 1.40711 1.56760 1.59563 1.67996 1.82916 2.20327 2.62037 2.73873 3.02238 3.19402 3.35276 3.39198 3.46133 3.48517 3.67619 3.73241 3.80506 4.01661 4.20298 4.29204 4.33678 4.40836 4.57386 4.65581 4.71695 4.72141 4.88763 5.00634 5.15480 5.22073 5.35304 5.64049 5.67107 5.73242 6.25678 6.26238 6.80811 6.91448 7.63504 8.30272 8.98064 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.045060 B = 0.002696 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.238487 B =10384.178600 C =10552.076611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.081 4.081 3 Si 1.125 2.875 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.622 5.622 10 C 0.144 3.856 11 C -0.154 4.154 12 H 0.150 0.850 13 C -0.177 4.177 14 H 0.134 0.866 15 C 0.167 3.833 16 C 0.121 3.879 17 H 0.112 0.888 18 N -0.668 5.668 19 C 0.565 3.435 20 O -0.558 6.558 21 C -0.085 4.085 22 C -0.064 4.064 23 C 0.077 3.923 24 N -0.132 5.132 25 O -0.614 6.614 26 C 0.075 3.925 27 C -0.055 4.055 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.005 0.995 33 H 0.423 0.577 34 H 0.211 0.789 35 H 0.209 0.791 36 H 0.202 0.798 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -15.781 9.654 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.276 4.276 3 Si 0.949 3.051 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.348 5.348 10 C 0.018 3.982 11 C -0.174 4.174 12 H 0.168 0.832 13 C -0.198 4.198 14 H 0.152 0.848 15 C 0.041 3.959 16 C 0.014 3.986 17 H 0.130 0.870 18 N -0.318 5.318 19 C 0.352 3.648 20 O -0.436 6.436 21 C -0.096 4.096 22 C -0.082 4.082 23 C -0.068 4.068 24 N 0.187 4.813 25 O -0.668 6.668 26 C -0.070 4.070 27 C -0.074 4.074 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.219 0.781 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.731 -14.291 9.381 17.182 hybrid contribution 0.019 -1.663 0.033 1.664 sum 1.750 -15.954 9.413 18.606 Atomic orbital electron populations 1.70838 1.07670 1.29478 1.51189 1.27313 0.96640 1.04852 0.98833 0.82730 0.74237 0.71497 0.76647 1.19349 1.21349 1.21898 1.20070 0.97193 0.88012 1.41244 0.91759 1.45555 1.37534 1.01409 1.50261 1.21305 0.98861 0.84231 0.93772 1.24205 0.94115 1.01512 0.97585 0.83215 1.24150 1.05348 0.90386 0.99919 0.84824 1.20855 0.89593 0.95311 0.90167 1.21403 0.98421 0.86141 0.92668 0.87036 1.44946 1.25246 1.30421 1.31234 1.18148 0.81559 0.80993 0.84083 1.90856 1.39005 1.72840 1.40916 1.20479 0.96757 0.96305 0.96066 1.22379 0.99253 0.96544 0.90067 1.23134 0.92896 0.89644 1.01125 1.43469 1.09273 1.14694 1.13829 1.97655 1.96421 1.37063 1.35644 1.22974 0.94693 1.00518 0.88768 1.22102 0.98633 0.90236 0.96448 0.93601 0.96370 0.91933 0.94634 0.97729 0.73763 0.77235 0.77412 0.78079 0.79351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 12.82 21.65 0.28 -57.66 16 2 C -0.08 -4.56 5.12 84.86 0.43 -4.12 16 3 Si 1.13 49.86 29.98 68.60 2.06 51.92 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.34 -18.52 10.19 84.03 0.86 -17.66 16 8 H 0.06 3.47 7.94 -2.91 -0.02 3.45 16 9 N -0.62 -30.38 3.23 -688.97 -2.22 -32.60 16 10 C 0.14 5.43 7.04 86.53 0.61 6.04 16 11 C -0.15 -4.10 7.06 -9.89 -0.07 -4.17 16 12 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 13 C -0.18 -5.36 7.04 -10.03 -0.07 -5.43 16 14 H 0.13 3.39 8.14 -2.38 -0.02 3.37 16 15 C 0.17 7.46 4.98 86.40 0.43 7.89 16 16 C 0.12 3.00 5.98 44.99 0.27 3.27 16 17 H 0.11 3.47 7.40 -2.39 -0.02 3.46 16 18 N -0.67 -10.02 5.52 -445.29 -2.46 -12.47 16 19 C 0.57 9.78 7.79 86.83 0.68 10.46 16 20 O -0.56 -14.96 16.01 -3.81 -0.06 -15.02 16 21 C -0.08 -0.88 5.91 -19.88 -0.12 -1.00 16 22 C -0.06 -0.30 9.61 22.62 0.22 -0.08 16 23 C 0.08 0.79 10.67 84.61 0.90 1.69 16 24 N -0.13 -2.57 3.58 -195.99 -0.70 -3.27 16 25 O -0.61 -21.22 20.04 -38.78 -0.78 -21.99 16 26 C 0.08 0.99 10.67 84.61 0.90 1.89 16 27 C -0.06 -0.56 9.68 22.62 0.22 -0.34 16 28 H 0.25 15.81 6.41 -92.71 -0.59 15.21 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.04 1.79 7.47 -2.39 -0.02 1.77 16 32 H 0.00 0.24 7.66 -2.39 -0.02 0.22 16 33 H 0.42 2.59 6.96 -92.71 -0.65 1.94 16 34 H 0.21 -0.88 6.53 -2.91 -0.02 -0.90 16 35 H 0.21 1.21 8.06 -2.92 -0.02 1.19 16 36 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.19 1.53 7.74 -2.91 -0.02 1.51 16 Total: -1.00 -89.73 321.04 2.01 -87.72 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.64 Total: 4.93 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.26 Total: -1.56 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -5.10 Total: -106.00 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.84 Total: -37.01 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.06 Total: 51.92 kcal Total: -89.73 2.01 -87.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958160163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.239 kcal (2) G-P(sol) polarization free energy of solvation -89.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds