Wall clock time and date at job start Fri Apr 10 2020 17:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21517 * 119.99829 * 0.02562 * 19 18 16 21 21 C 1.48152 * 120.00302 * 180.02562 * 19 18 16 22 22 C 1.39164 * 119.69263 * 180.02562 * 21 19 18 23 23 C 1.38737 * 119.18637 * 180.02562 * 22 21 19 24 24 C 1.38370 * 118.56194 * 359.97438 * 23 22 21 25 25 C 1.39244 * 119.30440 * 0.02562 * 24 23 22 26 26 O 1.35671 * 119.61320 * 179.97438 * 25 24 23 27 27 N 1.31924 * 120.76693 * 359.72336 * 25 24 23 28 28 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 30 30 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 31 31 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 32 32 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 33 33 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 34 34 H 1.08001 * 120.40575 * 0.02562 * 22 21 19 35 35 H 1.08006 * 120.71640 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.34803 * 179.97438 * 24 23 22 37 37 H 0.96703 * 113.99548 * 90.00474 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1990 -7.5039 -0.6949 21 6 -1.9693 -8.4874 1.2827 22 6 -2.3995 -9.6376 0.6280 23 6 -2.9894 -10.6547 1.3644 24 6 -3.1286 -10.4871 2.7309 25 6 -2.6762 -9.3106 3.3227 26 8 -2.8100 -9.1395 4.6619 27 7 -2.1147 -8.3627 2.5971 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.7538 0.3762 30 1 1.8506 -4.1842 -1.0040 31 1 -0.5204 -2.8478 -1.0095 32 1 -0.7143 -1.7149 0.3636 33 1 -1.0300 -6.1901 2.0947 34 1 -2.2756 -9.7372 -0.4402 35 1 -3.3326 -11.5578 0.8815 36 1 -3.5840 -11.2602 3.3319 37 1 -2.0558 -9.4582 5.1764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958483830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:26 Heat of formation + Delta-G solvation = 34.994185 kcal Electronic energy + Delta-G solvation = -21752.553246 eV Core-core repulsion = 18304.685882 eV Total energy + Delta-G solvation = -3447.867364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03379 -39.53539 -38.22384 -37.19756 -34.46405 -33.23349 -32.35560 -30.82600 -30.04577 -27.03373 -25.99628 -24.87655 -23.64535 -21.99943 -20.69450 -20.34970 -19.18648 -19.00874 -17.93536 -16.96003 -16.81105 -16.38256 -15.96868 -15.67639 -14.96879 -14.67542 -14.39121 -13.87421 -13.54650 -13.29510 -13.16582 -12.71215 -12.59125 -12.18676 -12.15511 -11.48018 -11.32539 -11.10012 -10.85010 -10.54644 -10.41442 -10.30957 -10.15539 -10.00835 -9.75247 -9.65531 -9.38548 -9.16390 -8.80046 -8.32274 -6.90768 -5.64928 -3.08962 0.24939 0.70970 2.48584 2.91615 3.18193 3.40759 3.45691 3.48456 3.50405 4.12342 4.36887 4.45591 4.49645 4.53662 4.62119 5.00297 5.07616 5.21724 5.38448 5.45647 5.50542 5.60072 5.65662 5.82447 5.93565 5.98323 6.17093 6.29504 6.56645 6.69034 6.81084 6.91684 7.02118 7.28412 7.34458 7.56291 7.62236 7.81187 8.17754 8.29134 9.13746 9.77926 10.49157 11.38546 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036460 B = 0.002905 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.773062 B = 9635.363397 C = 9985.806150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.161 3.839 11 C -0.184 4.184 12 H 0.103 0.897 13 C -0.169 4.169 14 H 0.103 0.897 15 C 0.156 3.844 16 C 0.088 3.912 17 H 0.132 0.868 18 N -0.674 5.674 19 C 0.570 3.430 20 O -0.530 6.530 21 C 0.110 3.890 22 C -0.122 4.122 23 C -0.065 4.065 24 C -0.166 4.166 25 C 0.310 3.690 26 O -0.479 6.479 27 N -0.479 5.479 28 H 0.253 0.747 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.137 0.863 33 H 0.410 0.590 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -22.663 6.781 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.034 3.966 11 C -0.205 4.205 12 H 0.121 0.879 13 C -0.190 4.190 14 H 0.121 0.879 15 C 0.032 3.968 16 C -0.018 4.018 17 H 0.150 0.850 18 N -0.321 5.321 19 C 0.354 3.646 20 O -0.406 6.406 21 C -0.028 4.028 22 C -0.143 4.143 23 C -0.091 4.091 24 C -0.188 4.188 25 C 0.129 3.871 26 O -0.286 6.286 27 N -0.201 5.201 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.154 0.846 33 H 0.246 0.754 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.053 -21.431 6.205 23.118 hybrid contribution 0.459 -0.201 0.599 0.781 sum -5.594 -21.632 6.804 23.357 Atomic orbital electron populations 1.69491 1.04962 1.24653 1.58018 1.24763 0.95704 0.97712 1.02803 0.85940 0.78564 0.83405 0.77236 1.20552 1.21740 1.21779 1.19165 0.90424 0.82152 1.42438 0.90173 1.46145 1.01343 0.99403 1.85647 1.21080 0.94784 0.85789 0.94962 1.24398 0.91119 1.02600 1.02394 0.87900 1.24649 0.99745 0.91568 1.03053 0.87900 1.22559 0.85399 0.95159 0.93703 1.22015 0.97920 0.85579 0.96278 0.84995 1.45264 1.58731 1.16111 1.12005 1.17778 0.78517 0.81666 0.86614 1.90800 1.56429 1.79863 1.13498 1.20982 0.98301 0.94994 0.88516 1.22189 0.96648 0.92708 1.02706 1.21569 0.95418 0.99004 0.93118 1.22338 1.02252 0.97818 0.96366 1.19090 0.94204 0.88600 0.85232 1.84822 1.45301 1.85768 1.12758 1.67023 1.14328 1.31592 1.07159 0.93619 0.92995 0.95479 0.96337 0.84577 0.75428 0.82751 0.83375 0.83624 0.73975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.12 55.49 0.56 -26.26 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.21 -5.98 10.42 -15.05 -0.16 -6.14 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.62 3.46 -165.72 -0.57 -16.19 16 10 C 0.16 3.45 7.05 -2.41 -0.02 3.43 16 11 C -0.18 -3.44 7.06 -89.22 -0.63 -4.07 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.17 -3.37 6.96 -89.23 -0.62 -3.99 16 14 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 15 C 0.16 3.83 6.43 -0.31 0.00 3.82 16 16 C 0.09 1.56 5.97 -67.93 -0.41 1.16 16 17 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 18 N -0.67 -10.36 5.55 -54.65 -0.30 -10.66 16 19 C 0.57 8.78 7.81 -12.19 -0.10 8.69 16 20 O -0.53 -9.52 15.88 5.35 0.08 -9.43 16 21 C 0.11 1.38 6.75 -83.02 -0.56 0.82 16 22 C -0.12 -1.19 9.63 -39.05 -0.38 -1.56 16 23 C -0.07 -0.44 10.16 -39.35 -0.40 -0.84 16 24 C -0.17 -1.16 10.05 -39.16 -0.39 -1.56 16 25 C 0.31 2.97 7.74 -17.14 -0.13 2.84 16 26 O -0.48 -3.89 13.56 -18.71 -0.25 -4.14 16 27 N -0.48 -5.76 9.57 -9.88 -0.09 -5.85 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 3.72 5.34 -51.93 -0.28 3.44 16 33 H 0.41 5.75 8.15 -40.82 -0.33 5.41 16 34 H 0.15 1.41 7.63 -52.49 -0.40 1.01 16 35 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.40 1.22 9.06 45.56 0.41 1.63 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -33.65 321.08 -8.14 -41.79 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.49 Total: 6.75 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.88 Total: 2.09 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.41 Total: -58.97 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.17 Total: -13.57 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.65 -8.14 -41.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958483830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.781 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds