Wall clock time and date at job start Fri Apr 10 2020 17:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21517 * 119.99829 * 0.02562 * 19 18 16 21 21 C 1.48152 * 120.00302 * 180.02562 * 19 18 16 22 22 C 1.39164 * 119.69263 * 180.02562 * 21 19 18 23 23 C 1.38737 * 119.18637 * 180.02562 * 22 21 19 24 24 C 1.38370 * 118.56194 * 359.97438 * 23 22 21 25 25 C 1.39244 * 119.30440 * 0.02562 * 24 23 22 26 26 O 1.35671 * 119.61320 * 179.97438 * 25 24 23 27 27 N 1.31924 * 120.76693 * 359.72336 * 25 24 23 28 28 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 30 30 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 31 31 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 32 32 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 33 33 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 34 34 H 1.08001 * 120.40575 * 0.02562 * 22 21 19 35 35 H 1.08006 * 120.71640 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.34803 * 179.97438 * 24 23 22 37 37 H 0.96703 * 113.99548 * 90.00474 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1990 -7.5039 -0.6949 21 6 -1.9693 -8.4874 1.2827 22 6 -2.3995 -9.6376 0.6280 23 6 -2.9894 -10.6547 1.3644 24 6 -3.1286 -10.4871 2.7309 25 6 -2.6762 -9.3106 3.3227 26 8 -2.8100 -9.1395 4.6619 27 7 -2.1147 -8.3627 2.5971 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.7538 0.3762 30 1 1.8506 -4.1842 -1.0040 31 1 -0.5204 -2.8478 -1.0095 32 1 -0.7143 -1.7149 0.3636 33 1 -1.0300 -6.1901 2.0947 34 1 -2.2756 -9.7372 -0.4402 35 1 -3.3326 -11.5578 0.8815 36 1 -3.5840 -11.2602 3.3319 37 1 -2.0558 -9.4582 5.1764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958483830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:25 Heat of formation + Delta-G solvation = 7.892312 kcal Electronic energy + Delta-G solvation = -21753.728472 eV Core-core repulsion = 18304.685882 eV Total energy + Delta-G solvation = -3449.042589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86640 -40.78258 -39.64554 -37.90244 -36.07114 -34.53450 -33.54851 -32.07824 -31.36820 -28.85012 -27.75714 -25.98214 -24.33380 -23.50134 -22.00651 -21.91109 -20.83593 -19.81105 -18.94496 -18.86923 -17.82293 -17.26007 -16.91841 -16.69064 -16.52613 -16.06361 -15.67245 -15.33704 -14.90808 -14.60958 -14.39877 -14.02602 -13.81144 -13.28046 -13.19240 -13.09533 -13.01344 -12.79230 -12.75437 -12.10543 -11.98859 -11.75862 -11.70486 -11.62127 -11.04755 -10.99798 -10.73762 -10.54681 -10.12344 -9.75238 -8.97337 -7.76115 -5.23692 -0.50120 0.08637 1.48550 1.49659 1.50646 1.60088 1.78669 2.43150 2.49427 2.64182 2.87206 3.29524 3.35748 3.53215 3.80046 3.81696 3.88070 3.90418 4.03056 4.11617 4.32528 4.36897 4.51962 4.52293 4.74525 4.87756 4.95391 4.97003 5.06118 5.25045 5.34615 5.42472 5.45537 5.46924 5.76456 6.23550 6.26356 6.54726 6.74776 7.00243 7.01798 7.68832 8.43718 9.25782 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036460 B = 0.002905 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.773062 B = 9635.363397 C = 9985.806150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.071 4.071 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.155 3.845 11 C -0.168 4.168 12 H 0.128 0.872 13 C -0.175 4.175 14 H 0.114 0.886 15 C 0.156 3.844 16 C 0.112 3.888 17 H 0.116 0.884 18 N -0.669 5.669 19 C 0.569 3.431 20 O -0.563 6.563 21 C 0.082 3.918 22 C -0.124 4.124 23 C -0.052 4.052 24 C -0.147 4.147 25 C 0.298 3.702 26 O -0.489 6.489 27 N -0.505 5.505 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.001 0.999 32 H 0.108 0.892 33 H 0.418 0.582 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -25.309 8.216 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.104 0.896 9 N -0.350 5.350 10 C 0.030 3.970 11 C -0.189 4.189 12 H 0.146 0.854 13 C -0.196 4.196 14 H 0.132 0.868 15 C 0.031 3.969 16 C 0.005 3.995 17 H 0.134 0.866 18 N -0.317 5.317 19 C 0.356 3.644 20 O -0.442 6.442 21 C -0.055 4.055 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.168 4.168 25 C 0.116 3.884 26 O -0.299 6.299 27 N -0.228 5.228 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.126 0.874 33 H 0.256 0.744 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.200 0.800 37 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -6.187 -24.123 7.671 26.059 hybrid contribution 0.454 0.481 0.185 0.686 sum -5.733 -23.642 7.856 25.564 Atomic orbital electron populations 1.69750 1.06285 1.24972 1.58958 1.25631 0.96630 1.00974 1.03057 0.84899 0.78022 0.79046 0.76666 1.19057 1.22046 1.21800 1.19547 0.91008 0.83297 1.42004 0.89627 1.46434 1.02048 1.00542 1.85940 1.21206 0.95872 0.84262 0.95705 1.24322 0.90168 1.01893 1.02538 0.85405 1.24317 1.01479 0.91146 1.02660 0.86767 1.22286 0.84948 0.95996 0.93658 1.21575 0.97087 0.85127 0.95661 0.86631 1.45130 1.58758 1.15620 1.12186 1.18308 0.77640 0.81985 0.86492 1.90771 1.57756 1.80610 1.15024 1.20537 1.00928 0.95081 0.88963 1.22347 0.96545 0.92585 1.03027 1.22018 0.93583 0.99226 0.92927 1.22736 1.00100 0.97288 0.96676 1.19431 0.94217 0.89051 0.85655 1.84787 1.46644 1.86163 1.12345 1.66855 1.15650 1.33221 1.07065 0.94141 0.91813 0.95507 0.98113 0.87409 0.74441 0.82735 0.79261 0.80043 0.71655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.97 10.12 21.65 0.22 -56.75 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.99 46.02 29.55 68.60 2.03 48.04 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.23 -13.05 10.42 84.03 0.88 -12.17 16 8 H 0.09 4.62 7.83 -2.91 -0.02 4.59 16 9 N -0.62 -33.12 3.46 -678.23 -2.35 -35.47 16 10 C 0.16 6.67 7.05 86.53 0.61 7.28 16 11 C -0.17 -6.18 7.06 -9.88 -0.07 -6.25 16 12 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 13 C -0.18 -7.06 6.96 -9.90 -0.07 -7.13 16 14 H 0.11 4.33 8.14 -2.39 -0.02 4.32 16 15 C 0.16 7.93 6.43 85.78 0.55 8.48 16 16 C 0.11 4.02 5.97 44.99 0.27 4.29 16 17 H 0.12 4.61 7.40 -2.39 -0.02 4.59 16 18 N -0.67 -20.43 5.55 -445.11 -2.47 -22.90 16 19 C 0.57 17.59 7.81 86.88 0.68 18.26 16 20 O -0.56 -20.60 15.88 -3.77 -0.06 -20.66 16 21 C 0.08 1.98 6.75 41.85 0.28 2.26 16 22 C -0.12 -2.19 9.63 22.61 0.22 -1.97 16 23 C -0.05 -0.50 10.16 22.42 0.23 -0.28 16 24 C -0.15 -1.45 10.05 22.54 0.23 -1.22 16 25 C 0.30 4.96 7.74 84.92 0.66 5.62 16 26 O -0.49 -6.71 13.56 -89.88 -1.22 -7.93 16 27 N -0.51 -11.50 9.57 -298.19 -2.85 -14.35 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.11 6.19 5.34 -2.39 -0.01 6.18 16 33 H 0.42 11.46 8.15 -92.70 -0.76 10.71 16 34 H 0.15 2.65 7.63 -2.91 -0.02 2.63 16 35 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 36 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.42 1.51 9.06 -74.06 -0.67 0.84 16 Total: -1.00 -75.17 321.08 -2.08 -77.25 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.30 Total: 19.19 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 4.92 Total: 13.59 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -7.45 Total: -129.48 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.28 Total: -28.59 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.17 -2.08 -77.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958483830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.138 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds