Wall clock time and date at job start Fri Apr 10 2020 17:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.09000 * 117.44429 * 252.39637 * 16 13 11 18 18 N 1.46505 * 117.44125 * 107.64720 * 16 13 11 19 19 C 1.34771 * 119.99654 * 155.00283 * 18 16 13 20 20 O 1.21515 * 120.00331 * 359.97438 * 19 18 16 21 21 C 1.48169 * 120.00000 * 180.02562 * 19 18 16 22 22 C 1.39973 * 120.88516 * 359.72142 * 21 19 18 23 23 C 1.37984 * 119.12892 * 179.71180 * 22 21 19 24 24 N 1.31903 * 120.97725 * 0.57170 * 23 22 21 25 25 C 1.32180 * 121.97230 * 359.72591 * 24 23 22 26 26 O 1.35680 * 119.62555 * 179.97438 * 25 24 23 27 27 C 1.38899 * 120.75208 * 359.97034 * 25 24 23 28 28 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 30 30 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 31 31 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 32 32 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 33 33 H 0.96999 * 120.00042 * 334.99928 * 18 16 13 34 34 H 1.07997 * 120.43897 * 359.97438 * 22 21 19 35 35 H 1.07999 * 119.50983 * 180.27790 * 23 22 21 36 36 H 0.96705 * 114.00218 * 269.97632 * 26 25 24 37 37 H 1.08001 * 120.52494 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3524 -5.2957 -0.7160 18 7 -0.9200 -6.2775 1.1345 19 6 -1.3391 -7.3937 0.5063 20 8 -1.1997 -7.5032 -0.6958 21 6 -1.9710 -8.4871 1.2814 22 6 -2.1365 -8.3826 2.6674 23 6 -2.7351 -9.4201 3.3524 24 7 -3.1398 -10.5058 2.7220 25 6 -2.9985 -10.6503 1.4158 26 8 -3.4316 -11.7878 0.8161 27 6 -2.4118 -9.6510 0.6500 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.7538 0.3762 30 1 1.8506 -4.1842 -1.0040 31 1 -0.5204 -2.8478 -1.0095 32 1 -0.7143 -1.7149 0.3636 33 1 -1.0315 -6.1900 2.0941 34 1 -1.8040 -7.4998 3.1931 35 1 -2.8700 -9.3441 4.4213 36 1 -2.7642 -12.4860 0.7685 37 1 -2.2986 -9.7728 -0.4172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958518208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:28 Heat of formation + Delta-G solvation = 35.637449 kcal Electronic energy + Delta-G solvation = -21664.210622 eV Core-core repulsion = 18216.371152 eV Total energy + Delta-G solvation = -3447.839470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06896 -39.68846 -38.28749 -37.33909 -34.58966 -33.26670 -32.44969 -30.71540 -30.12027 -27.12031 -26.09811 -24.89172 -23.80592 -22.03380 -20.89751 -20.46388 -19.29737 -19.02571 -17.71376 -17.22179 -16.89173 -16.14021 -15.98810 -15.82447 -15.07010 -14.73189 -14.57807 -14.20522 -13.63346 -13.50791 -13.28833 -12.78208 -12.49663 -12.28317 -12.13309 -11.60023 -11.40521 -11.15705 -10.86766 -10.48192 -10.37850 -10.32233 -10.26162 -10.11313 -9.83271 -9.71719 -9.40897 -9.27105 -8.85684 -8.47951 -6.97383 -5.70614 -3.14840 0.28758 0.55764 2.55913 2.77933 3.17098 3.37621 3.41686 3.43014 3.43935 4.18476 4.24640 4.30543 4.43243 4.47532 4.58458 4.85927 5.08924 5.24351 5.27981 5.33708 5.34837 5.52225 5.57914 5.73684 5.83304 5.96834 6.02292 6.17960 6.47004 6.61298 6.69086 6.82143 7.04561 7.26053 7.35245 7.43147 7.49714 7.74336 8.00298 8.22505 9.07856 9.72163 10.42731 11.32822 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.002706 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.373838 B =10345.739416 C =10507.457902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.160 3.840 11 C -0.183 4.183 12 H 0.103 0.897 13 C -0.169 4.169 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.089 3.911 17 H 0.133 0.867 18 N -0.685 5.685 19 C 0.558 3.442 20 O -0.524 6.524 21 C -0.065 4.065 22 C -0.153 4.153 23 C 0.123 3.877 24 N -0.491 5.491 25 C 0.308 3.692 26 O -0.479 6.479 27 C -0.129 4.129 28 H 0.254 0.746 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.138 0.862 33 H 0.399 0.601 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.403 0.597 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -18.989 6.977 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.205 4.205 12 H 0.121 0.879 13 C -0.190 4.190 14 H 0.121 0.879 15 C 0.031 3.969 16 C -0.017 4.017 17 H 0.151 0.849 18 N -0.334 5.334 19 C 0.343 3.657 20 O -0.401 6.401 21 C -0.077 4.077 22 C -0.174 4.174 23 C -0.034 4.034 24 N -0.211 5.211 25 C 0.129 3.871 26 O -0.286 6.286 27 C -0.151 4.151 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.155 0.845 33 H 0.235 0.765 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.261 0.739 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.119 -19.149 6.432 20.839 hybrid contribution 1.146 1.091 0.257 1.603 sum -3.974 -18.058 6.689 19.663 Atomic orbital electron populations 1.69458 1.04981 1.24964 1.57781 1.24761 0.95707 0.97739 1.02648 0.86082 0.78352 0.82755 0.77895 1.21170 1.21518 1.21188 1.19070 0.90383 0.82141 1.42838 0.90252 1.46120 1.01284 0.99377 1.85675 1.21084 0.94817 0.85810 0.94978 1.24414 0.91145 1.02520 1.02405 0.87873 1.24663 0.99710 0.91584 1.03024 0.87910 1.22572 0.85465 0.95141 0.93731 1.22020 0.97919 0.85398 0.96351 0.84935 1.45289 1.60076 1.16742 1.11296 1.18051 0.78585 0.81847 0.87191 1.90802 1.55528 1.79785 1.13953 1.20345 0.98572 0.94898 0.93844 1.22398 1.00341 1.00985 0.93677 1.22515 0.93102 0.87385 1.00368 1.67052 1.17240 1.26175 1.10590 1.19043 0.92734 0.88353 0.86927 1.84806 1.42257 1.24073 1.77448 1.22285 0.96814 0.93096 1.02866 0.93467 0.92941 0.95479 0.96325 0.84526 0.76530 0.83738 0.81414 0.73930 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.12 55.49 0.56 -25.64 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -5.90 10.42 -15.05 -0.16 -6.06 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.08 3.46 -165.72 -0.57 -15.66 16 10 C 0.16 3.29 7.05 -2.41 -0.02 3.27 16 11 C -0.18 -3.17 7.06 -89.22 -0.63 -3.80 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 C -0.17 -3.09 6.96 -89.23 -0.62 -3.72 16 14 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 15 C 0.16 3.65 6.43 -0.31 0.00 3.64 16 16 C 0.09 1.43 5.97 -67.92 -0.41 1.03 16 17 H 0.13 2.43 7.40 -51.93 -0.38 2.05 16 18 N -0.69 -8.71 5.52 -54.64 -0.30 -9.02 16 19 C 0.56 7.61 7.80 -12.18 -0.10 7.51 16 20 O -0.52 -9.12 16.01 5.35 0.09 -9.03 16 21 C -0.07 -0.70 5.91 -104.67 -0.62 -1.32 16 22 C -0.15 -1.21 9.61 -39.03 -0.38 -1.59 16 23 C 0.12 0.96 11.17 -17.61 -0.20 0.76 16 24 N -0.49 -5.03 10.36 -13.38 -0.14 -5.17 16 25 C 0.31 3.13 7.74 -17.16 -0.13 2.99 16 26 O -0.48 -4.14 13.56 -18.74 -0.25 -4.39 16 27 C -0.13 -1.36 9.61 -38.84 -0.37 -1.73 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 3.60 5.34 -51.93 -0.28 3.32 16 33 H 0.40 3.81 6.96 -40.82 -0.28 3.53 16 34 H 0.14 0.75 6.53 -52.49 -0.34 0.40 16 35 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.40 1.36 9.06 45.56 0.41 1.78 16 37 H 0.16 1.63 7.74 -52.49 -0.41 1.22 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -33.74 319.06 -7.92 -41.66 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.36 Total: 5.29 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.72 Total: 0.54 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.45 Total: -55.48 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.17 Total: -13.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.74 -7.92 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958518208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.300 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds