Wall clock time and date at job start Fri Apr 10 2020 17:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46972 * 119.99851 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.09000 * 117.44429 * 252.39637 * 16 13 11 18 18 N 1.46505 * 117.44125 * 107.64720 * 16 13 11 19 19 C 1.34771 * 119.99654 * 155.00283 * 18 16 13 20 20 O 1.21515 * 120.00331 * 359.97438 * 19 18 16 21 21 C 1.48169 * 120.00000 * 180.02562 * 19 18 16 22 22 C 1.39973 * 120.88516 * 359.72142 * 21 19 18 23 23 C 1.37984 * 119.12892 * 179.71180 * 22 21 19 24 24 N 1.31903 * 120.97725 * 0.57170 * 23 22 21 25 25 C 1.32180 * 121.97230 * 359.72591 * 24 23 22 26 26 O 1.35680 * 119.62555 * 179.97438 * 25 24 23 27 27 C 1.38899 * 120.75208 * 359.97034 * 25 24 23 28 28 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 30 30 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 31 31 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 32 32 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 33 33 H 0.96999 * 120.00042 * 334.99928 * 18 16 13 34 34 H 1.07997 * 120.43897 * 359.97438 * 22 21 19 35 35 H 1.07999 * 119.50983 * 180.27790 * 23 22 21 36 36 H 0.96705 * 114.00218 * 269.97632 * 26 25 24 37 37 H 1.08001 * 120.52494 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3524 -5.2957 -0.7160 18 7 -0.9200 -6.2775 1.1345 19 6 -1.3391 -7.3937 0.5063 20 8 -1.1997 -7.5032 -0.6958 21 6 -1.9710 -8.4871 1.2814 22 6 -2.1365 -8.3826 2.6674 23 6 -2.7351 -9.4201 3.3524 24 7 -3.1398 -10.5058 2.7220 25 6 -2.9985 -10.6503 1.4158 26 8 -3.4316 -11.7878 0.8161 27 6 -2.4118 -9.6510 0.6500 28 1 -0.4850 0.8400 0.0004 29 1 2.9073 -3.7538 0.3762 30 1 1.8506 -4.1842 -1.0040 31 1 -0.5204 -2.8478 -1.0095 32 1 -0.7143 -1.7149 0.3636 33 1 -1.0315 -6.1900 2.0941 34 1 -1.8040 -7.4998 3.1931 35 1 -2.8700 -9.3441 4.4213 36 1 -2.7642 -12.4860 0.7685 37 1 -2.2986 -9.7728 -0.4172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958518208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:28 Heat of formation + Delta-G solvation = 8.321052 kcal Electronic energy + Delta-G solvation = -21665.395150 eV Core-core repulsion = 18216.371152 eV Total energy + Delta-G solvation = -3449.023998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89129 -40.82528 -39.66070 -38.02768 -36.09654 -34.59889 -33.62359 -32.02856 -31.23761 -28.83079 -27.77945 -26.02762 -24.49116 -23.48889 -22.03458 -21.95575 -20.81222 -19.94885 -18.90547 -18.50366 -18.10869 -17.11461 -16.85173 -16.67286 -16.64573 -16.11478 -15.66251 -15.28098 -15.04805 -14.91412 -14.59021 -14.14981 -13.79374 -13.27723 -13.14324 -13.09503 -13.02299 -12.78162 -12.69478 -12.15476 -12.00466 -11.76222 -11.67025 -11.52268 -11.12309 -10.96444 -10.70999 -10.56923 -10.05440 -9.80196 -8.96348 -7.75560 -5.22791 -0.49399 -0.09969 1.49175 1.51899 1.58398 1.60741 1.70354 2.49182 2.50139 2.70330 2.87605 3.27495 3.35852 3.55173 3.65123 3.80950 3.84444 3.87543 3.92482 4.13305 4.28066 4.36696 4.52680 4.61135 4.65871 4.77832 4.88723 4.90728 4.99077 5.27285 5.33110 5.40378 5.46127 5.48723 5.78042 6.26388 6.33039 6.54113 6.80754 6.97615 7.02761 7.69977 8.44360 9.25719 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.002706 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.373838 B =10345.739416 C =10507.457902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.232 4.232 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.152 3.848 11 C -0.167 4.167 12 H 0.137 0.863 13 C -0.170 4.170 14 H 0.125 0.875 15 C 0.152 3.848 16 C 0.112 3.888 17 H 0.108 0.892 18 N -0.669 5.669 19 C 0.560 3.440 20 O -0.569 6.569 21 C -0.078 4.078 22 C -0.138 4.138 23 C 0.128 3.872 24 N -0.509 5.509 25 C 0.304 3.696 26 O -0.490 6.490 27 C -0.141 4.141 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.022 0.978 31 H -0.004 1.004 32 H 0.109 0.891 33 H 0.420 0.580 34 H 0.178 0.822 35 H 0.207 0.793 36 H 0.423 0.577 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 -20.082 9.528 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.361 4.361 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.026 3.974 11 C -0.188 4.188 12 H 0.154 0.846 13 C -0.191 4.191 14 H 0.143 0.857 15 C 0.027 3.973 16 C 0.005 3.995 17 H 0.126 0.874 18 N -0.319 5.319 19 C 0.348 3.652 20 O -0.449 6.449 21 C -0.089 4.089 22 C -0.158 4.158 23 C -0.029 4.029 24 N -0.229 5.229 25 C 0.126 3.874 26 O -0.300 6.300 27 C -0.163 4.163 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.014 0.986 32 H 0.127 0.873 33 H 0.259 0.741 34 H 0.196 0.804 35 H 0.223 0.777 36 H 0.284 0.716 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.746 -20.302 9.015 22.715 hybrid contribution 1.023 1.342 -0.572 1.782 sum -3.723 -18.960 8.443 21.087 Atomic orbital electron populations 1.69723 1.06200 1.25115 1.58819 1.25592 0.96608 1.00866 1.03033 0.85074 0.77050 0.78605 0.78110 1.20763 1.21995 1.20132 1.19452 0.90967 0.83386 1.42247 0.89788 1.46417 1.02110 1.00477 1.85955 1.21221 0.96095 0.84377 0.95703 1.24329 0.90089 1.01781 1.02572 0.84567 1.24327 1.01394 0.90701 1.02707 0.85699 1.22317 0.84858 0.96389 0.93705 1.21510 0.97227 0.85228 0.95553 0.87374 1.45015 1.59406 1.15479 1.12046 1.18480 0.77709 0.82255 0.86797 1.90788 1.57277 1.80667 1.16124 1.20130 0.99825 0.93967 0.94987 1.22718 0.98870 1.02029 0.92156 1.23190 0.91495 0.86252 1.01934 1.67147 1.17807 1.27456 1.10480 1.19051 0.92709 0.88609 0.87060 1.84751 1.43432 1.24423 1.77428 1.22255 0.97778 0.93685 1.02618 0.94120 0.91880 0.96040 0.98569 0.87332 0.74136 0.80444 0.77662 0.71597 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.22 10.12 21.65 0.22 -55.00 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.23 -12.76 10.42 84.03 0.88 -11.89 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -31.73 3.46 -678.23 -2.35 -34.07 16 10 C 0.15 6.15 7.05 86.53 0.61 6.76 16 11 C -0.17 -5.39 7.06 -9.88 -0.07 -5.46 16 12 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 13 C -0.17 -6.05 6.96 -9.90 -0.07 -6.11 16 14 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 15 C 0.15 7.31 6.43 85.78 0.55 7.86 16 16 C 0.11 3.47 5.97 44.99 0.27 3.74 16 17 H 0.11 4.01 7.40 -2.39 -0.02 3.99 16 18 N -0.67 -15.28 5.52 -445.09 -2.46 -17.73 16 19 C 0.56 14.52 7.80 86.88 0.68 15.20 16 20 O -0.57 -19.96 16.01 -3.76 -0.06 -20.02 16 21 C -0.08 -1.53 5.91 -19.90 -0.12 -1.64 16 22 C -0.14 -1.64 9.61 22.63 0.22 -1.42 16 23 C 0.13 1.50 11.17 84.62 0.94 2.44 16 24 N -0.51 -9.16 10.36 -309.13 -3.20 -12.36 16 25 C 0.30 5.78 7.74 84.80 0.66 6.44 16 26 O -0.49 -8.04 13.56 -89.98 -1.22 -9.26 16 27 C -0.14 -2.89 9.61 22.75 0.22 -2.68 16 28 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.11 5.92 5.34 -2.39 -0.01 5.91 16 33 H 0.42 6.21 6.96 -92.71 -0.65 5.56 16 34 H 0.18 0.85 6.53 -2.91 -0.02 0.84 16 35 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.42 2.47 9.06 -74.05 -0.67 1.80 16 37 H 0.14 3.16 7.74 -2.91 -0.02 3.14 16 Total: -1.00 -75.48 319.06 -1.99 -77.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.18 Total: 14.28 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.23 Total: 9.88 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -7.79 Total: -119.17 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.28 Total: -29.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.48 -1.99 -77.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958518208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.799 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds