Wall clock time and date at job start Fri Apr 10 2020 17:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48502 * 109.47112 * 274.81432 * 3 2 1 5 5 H 1.48505 * 109.47213 * 34.80679 * 3 2 1 6 6 H 1.48498 * 109.47423 * 154.80725 * 3 2 1 7 7 C 1.38809 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 170.81559 * 7 2 1 9 9 N 1.36935 * 120.00121 * 350.81898 * 7 2 1 10 10 C 1.48146 * 127.83899 * 164.38475 * 9 7 2 11 11 C 1.54384 * 104.61416 * 140.41716 * 10 9 7 12 12 H 1.09006 * 117.61704 * 242.76469 * 11 10 9 13 13 C 1.54144 * 106.23427 * 23.25083 * 11 10 9 14 14 H 1.08993 * 121.79102 * 221.55392 * 13 11 10 15 15 C 1.48150 * 127.83532 * 344.38509 * 9 7 2 16 16 C 1.53002 * 59.75323 * 113.48814 * 13 11 10 17 17 H 1.08997 * 117.44426 * 252.37703 * 16 13 11 18 18 N 1.46500 * 117.43749 * 107.62806 * 16 13 11 19 19 C 1.34776 * 119.99609 * 136.00557 * 18 16 13 20 20 O 1.21560 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.47839 * 119.99779 * 179.97438 * 19 18 16 22 22 N 1.32856 * 119.78250 * 359.97438 * 21 19 18 23 23 C 1.31369 * 121.69292 * 179.72487 * 22 21 19 24 24 C 1.38768 * 121.07266 * 359.97154 * 23 22 21 25 25 C 1.38301 * 119.43984 * 0.02615 * 24 23 22 26 26 C 1.39340 * 118.44343 * 359.97438 * 25 24 23 27 27 O 1.35650 * 120.54476 * 180.02562 * 26 25 24 28 28 H 0.96996 * 120.00561 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.40439 * 21.62937 * 10 9 7 30 30 H 1.09001 * 110.50758 * 259.25190 * 10 9 7 31 31 H 1.08992 * 110.40793 * 338.36940 * 15 9 7 32 32 H 1.09010 * 110.40559 * 100.68510 * 15 9 7 33 33 H 0.97000 * 120.00566 * 315.99846 * 18 16 13 34 34 H 1.07999 * 119.46789 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.28214 * 180.02562 * 24 23 22 36 36 H 1.08007 * 120.77840 * 179.97438 * 25 24 23 37 37 H 0.96701 * 113.99531 * 269.98147 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3959 2.1052 -1.3952 5 1 1.5020 2.6213 0.7992 6 1 3.5948 1.4132 0.5959 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2080 -0.1488 9 7 1.3389 -2.3803 0.1903 10 6 1.8194 -3.7545 -0.0843 11 6 1.2880 -4.5961 1.0959 12 1 2.0209 -5.0690 1.7496 13 6 0.0727 -3.8320 1.6573 14 1 -0.0997 -3.7355 2.7291 15 6 -0.0328 -2.5700 0.7167 16 6 -0.1167 -5.1918 0.9821 17 1 -0.5793 -5.2026 -0.0048 18 7 -0.4375 -6.3336 1.8420 19 6 -1.3975 -7.2053 1.4744 20 8 -1.9974 -7.0437 0.4296 21 6 -1.7209 -8.3579 2.3420 22 7 -1.0621 -8.5305 3.4827 23 6 -1.3225 -9.5382 4.2843 24 6 -2.3029 -10.4686 3.9701 25 6 -3.0169 -10.3327 2.7935 26 6 -2.7229 -9.2559 1.9594 27 8 -3.3972 -9.0813 0.7954 28 1 -0.4851 0.8400 -0.0004 29 1 2.9089 -3.7785 -0.1082 30 1 1.4113 -4.1207 -1.0264 31 1 -0.3408 -1.7004 1.2972 32 1 -0.7323 -2.7478 -0.1002 33 1 0.0410 -6.4624 2.6759 34 1 -0.7645 -9.6442 5.2029 35 1 -2.5067 -11.2919 4.6387 36 1 -3.7844 -11.0445 2.5273 37 1 -2.9914 -9.5214 0.0360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958637403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:30 Heat of formation + Delta-G solvation = 29.976108 kcal Electronic energy + Delta-G solvation = -21945.885191 eV Core-core repulsion = 18497.800227 eV Total energy + Delta-G solvation = -3448.084964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04067 -39.32005 -38.03800 -37.47208 -34.41103 -33.05093 -32.27335 -30.75432 -30.04255 -26.96100 -25.88294 -24.85781 -23.66842 -21.96704 -20.60035 -20.32513 -19.24927 -18.76041 -18.03323 -17.25307 -16.79458 -16.06109 -15.89900 -15.46827 -14.75341 -14.69835 -14.24833 -13.83053 -13.55074 -13.51316 -13.18556 -13.02138 -12.70806 -12.18880 -11.70121 -11.51985 -11.42127 -10.95542 -10.81347 -10.38397 -10.28185 -10.28045 -10.16028 -10.12762 -9.72444 -9.61194 -9.30233 -9.14672 -8.71065 -8.25866 -6.84514 -5.77415 -3.11884 0.26732 0.71743 2.61794 3.01933 3.40018 3.45384 3.46510 3.47804 3.73839 3.94533 4.38419 4.38937 4.45841 4.51395 4.56540 5.00985 5.09772 5.22299 5.41352 5.45950 5.53751 5.55275 5.62127 5.84237 5.93215 6.02430 6.11292 6.26446 6.55703 6.71436 6.85067 6.91222 7.22826 7.37153 7.38922 7.56753 7.68287 7.74390 8.22903 8.27493 9.12999 9.75774 10.53122 11.36876 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.040725 B = 0.002961 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.367593 B = 9454.609286 C = 9704.950696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.182 4.182 12 H 0.102 0.898 13 C -0.181 4.181 14 H 0.106 0.894 15 C 0.188 3.812 16 C 0.091 3.909 17 H 0.133 0.867 18 N -0.678 5.678 19 C 0.568 3.432 20 O -0.517 6.517 21 C 0.053 3.947 22 N -0.442 5.442 23 C 0.087 3.913 24 C -0.135 4.135 25 C -0.113 4.113 26 C 0.122 3.878 27 O -0.469 6.469 28 H 0.255 0.745 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.408 0.592 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -23.296 8.488 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.029 3.971 11 C -0.203 4.203 12 H 0.120 0.880 13 C -0.203 4.203 14 H 0.124 0.876 15 C 0.062 3.938 16 C -0.014 4.014 17 H 0.150 0.850 18 N -0.327 5.327 19 C 0.353 3.647 20 O -0.391 6.391 21 C -0.085 4.085 22 N -0.155 5.155 23 C -0.073 4.073 24 C -0.155 4.155 25 C -0.140 4.140 26 C 0.073 3.927 27 O -0.279 6.279 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.243 0.757 34 H 0.183 0.817 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.941 -21.920 8.184 23.727 hybrid contribution 0.304 -0.257 0.191 0.442 sum -3.637 -22.177 8.375 23.983 Atomic orbital electron populations 1.69898 1.05061 1.25459 1.55599 1.24912 0.95642 0.98013 1.01716 0.86094 0.78732 0.83302 0.77553 1.21495 1.21574 1.20525 1.18990 0.90824 0.82277 1.43467 0.90521 1.45128 1.13636 0.99973 1.72873 1.21124 0.97189 0.85857 0.92882 1.24251 0.90234 1.02530 1.03309 0.87954 1.25452 1.01701 0.93046 1.00095 0.87595 1.21659 0.86754 0.92264 0.93140 1.21937 0.98926 0.84578 0.95982 0.84961 1.45230 1.37426 1.25365 1.24643 1.17634 0.80325 0.81627 0.85144 1.90835 1.50637 1.74115 1.23543 1.21826 0.94935 0.97570 0.94181 1.67605 1.24751 1.20687 1.02470 1.22847 0.95972 0.89806 0.98693 1.22324 0.96026 1.00351 0.96813 1.22020 1.00040 0.96950 0.94954 1.19411 0.90669 0.92868 0.89768 1.84781 1.50239 1.76851 1.16051 0.93509 0.92979 0.95483 0.89256 0.95163 0.75691 0.81666 0.83822 0.83499 0.74270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.14 10.87 55.49 0.60 -26.54 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 22.10 29.56 -169.99 -5.03 17.07 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.40 10.35 -15.06 -0.16 -6.56 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 N -0.59 -15.46 3.38 -166.70 -0.56 -16.02 16 10 C 0.16 3.35 7.04 -2.41 -0.02 3.33 16 11 C -0.18 -3.34 6.97 -89.30 -0.62 -3.96 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.60 7.34 -87.43 -0.64 -4.24 16 14 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 15 C 0.19 4.67 5.76 -0.54 0.00 4.66 16 16 C 0.09 1.64 5.93 -67.93 -0.40 1.23 16 17 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 18 N -0.68 -10.44 5.55 -54.75 -0.30 -10.74 16 19 C 0.57 9.05 7.80 -12.33 -0.10 8.95 16 20 O -0.52 -9.67 14.70 -16.64 -0.24 -9.92 16 21 C 0.05 0.69 6.76 -82.88 -0.56 0.13 16 22 N -0.44 -4.92 9.54 -9.71 -0.09 -5.02 16 23 C 0.09 0.66 11.17 -17.55 -0.20 0.47 16 24 C -0.14 -0.81 10.10 -39.36 -0.40 -1.21 16 25 C -0.11 -0.85 10.12 -39.15 -0.40 -1.25 16 26 C 0.12 1.34 6.74 -38.56 -0.26 1.08 16 27 O -0.47 -5.37 11.58 -40.60 -0.47 -5.84 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 2.45 6.52 -51.93 -0.34 2.11 16 32 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.41 5.53 8.15 -40.82 -0.33 5.20 16 34 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.40 2.92 9.06 45.56 0.41 3.34 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -34.45 320.16 -8.69 -43.13 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.57 Total: 6.68 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -3.84 Total: 2.37 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.36 Total: -58.32 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.71 Total: -15.76 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.45 -8.69 -43.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958637403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.108 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds