Wall clock time and date at job start Fri Apr 10 2020 17:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48502 * 109.47112 * 274.81432 * 3 2 1 5 5 H 1.48505 * 109.47213 * 34.80679 * 3 2 1 6 6 H 1.48498 * 109.47423 * 154.80725 * 3 2 1 7 7 C 1.38809 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 170.81559 * 7 2 1 9 9 N 1.36935 * 120.00121 * 350.81898 * 7 2 1 10 10 C 1.48146 * 127.83899 * 164.38475 * 9 7 2 11 11 C 1.54384 * 104.61416 * 140.41716 * 10 9 7 12 12 H 1.09006 * 117.61704 * 242.76469 * 11 10 9 13 13 C 1.54144 * 106.23427 * 23.25083 * 11 10 9 14 14 H 1.08993 * 121.79102 * 221.55392 * 13 11 10 15 15 C 1.48150 * 127.83532 * 344.38509 * 9 7 2 16 16 C 1.53002 * 59.75323 * 113.48814 * 13 11 10 17 17 H 1.08997 * 117.44426 * 252.37703 * 16 13 11 18 18 N 1.46500 * 117.43749 * 107.62806 * 16 13 11 19 19 C 1.34776 * 119.99609 * 136.00557 * 18 16 13 20 20 O 1.21560 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.47839 * 119.99779 * 179.97438 * 19 18 16 22 22 N 1.32856 * 119.78250 * 359.97438 * 21 19 18 23 23 C 1.31369 * 121.69292 * 179.72487 * 22 21 19 24 24 C 1.38768 * 121.07266 * 359.97154 * 23 22 21 25 25 C 1.38301 * 119.43984 * 0.02615 * 24 23 22 26 26 C 1.39340 * 118.44343 * 359.97438 * 25 24 23 27 27 O 1.35650 * 120.54476 * 180.02562 * 26 25 24 28 28 H 0.96996 * 120.00561 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.40439 * 21.62937 * 10 9 7 30 30 H 1.09001 * 110.50758 * 259.25190 * 10 9 7 31 31 H 1.08992 * 110.40793 * 338.36940 * 15 9 7 32 32 H 1.09010 * 110.40559 * 100.68510 * 15 9 7 33 33 H 0.97000 * 120.00566 * 315.99846 * 18 16 13 34 34 H 1.07999 * 119.46789 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.28214 * 180.02562 * 24 23 22 36 36 H 1.08007 * 120.77840 * 179.97438 * 25 24 23 37 37 H 0.96701 * 113.99531 * 269.98147 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3959 2.1052 -1.3952 5 1 1.5020 2.6213 0.7992 6 1 3.5948 1.4132 0.5959 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2080 -0.1488 9 7 1.3389 -2.3803 0.1903 10 6 1.8194 -3.7545 -0.0843 11 6 1.2880 -4.5961 1.0959 12 1 2.0209 -5.0690 1.7496 13 6 0.0727 -3.8320 1.6573 14 1 -0.0997 -3.7355 2.7291 15 6 -0.0328 -2.5700 0.7167 16 6 -0.1167 -5.1918 0.9821 17 1 -0.5793 -5.2026 -0.0048 18 7 -0.4375 -6.3336 1.8420 19 6 -1.3975 -7.2053 1.4744 20 8 -1.9974 -7.0437 0.4296 21 6 -1.7209 -8.3579 2.3420 22 7 -1.0621 -8.5305 3.4827 23 6 -1.3225 -9.5382 4.2843 24 6 -2.3029 -10.4686 3.9701 25 6 -3.0169 -10.3327 2.7935 26 6 -2.7229 -9.2559 1.9594 27 8 -3.3972 -9.0813 0.7954 28 1 -0.4851 0.8400 -0.0004 29 1 2.9089 -3.7785 -0.1082 30 1 1.4113 -4.1207 -1.0264 31 1 -0.3408 -1.7004 1.2972 32 1 -0.7323 -2.7478 -0.1002 33 1 0.0410 -6.4624 2.6759 34 1 -0.7645 -9.6442 5.2029 35 1 -2.5067 -11.2919 4.6387 36 1 -3.7844 -11.0445 2.5273 37 1 -2.9914 -9.5214 0.0360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958637403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:30 Heat of formation + Delta-G solvation = 4.271173 kcal Electronic energy + Delta-G solvation = -21946.999841 eV Core-core repulsion = 18497.800227 eV Total energy + Delta-G solvation = -3449.199614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88574 -40.67282 -39.43664 -38.27495 -36.08328 -34.43861 -33.34732 -32.11994 -31.24674 -28.79718 -27.70888 -25.90920 -24.38586 -23.47231 -22.02438 -21.84937 -20.90843 -19.52951 -19.06978 -18.83593 -18.11622 -17.23079 -16.81952 -16.67762 -16.36827 -15.84488 -15.59051 -15.18763 -14.91893 -14.64547 -14.46474 -14.24631 -13.79771 -13.62781 -13.36792 -13.21408 -12.87047 -12.72538 -12.47428 -12.09150 -12.04473 -11.89930 -11.70783 -11.40802 -10.89415 -10.85448 -10.77253 -10.43440 -10.06883 -9.69041 -8.93976 -7.92261 -5.29875 -0.47808 0.11625 1.46797 1.48621 1.58839 1.61514 1.83750 2.48002 2.65265 2.87571 2.98380 3.16694 3.28687 3.57714 3.73459 3.83621 3.90057 3.91261 4.00401 4.06898 4.33590 4.36517 4.46736 4.50150 4.77204 4.87762 4.97491 4.99323 5.03107 5.25065 5.38025 5.42830 5.49492 5.51332 5.61773 6.14944 6.35160 6.62381 6.77419 6.98507 7.09484 7.65913 8.44707 9.21798 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.040725 B = 0.002961 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.367593 B = 9454.609286 C = 9704.950696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.984 3.016 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.086 0.914 9 N -0.616 5.616 10 C 0.150 3.850 11 C -0.158 4.158 12 H 0.137 0.863 13 C -0.186 4.186 14 H 0.124 0.876 15 C 0.192 3.808 16 C 0.111 3.889 17 H 0.109 0.891 18 N -0.669 5.669 19 C 0.564 3.436 20 O -0.557 6.557 21 C 0.018 3.982 22 N -0.461 5.461 23 C 0.084 3.916 24 C -0.109 4.109 25 C -0.111 4.111 26 C 0.109 3.891 27 O -0.491 6.491 28 H 0.250 0.750 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.000 1.000 33 H 0.419 0.581 34 H 0.201 0.799 35 H 0.190 0.810 36 H 0.175 0.825 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 -26.085 10.886 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.812 3.188 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.024 3.976 11 C -0.179 4.179 12 H 0.155 0.845 13 C -0.208 4.208 14 H 0.141 0.859 15 C 0.065 3.935 16 C 0.004 3.996 17 H 0.127 0.873 18 N -0.319 5.319 19 C 0.351 3.649 20 O -0.434 6.434 21 C -0.119 4.119 22 N -0.174 5.174 23 C -0.078 4.078 24 C -0.128 4.128 25 C -0.137 4.137 26 C 0.060 3.940 27 O -0.303 6.303 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.017 0.983 33 H 0.257 0.743 34 H 0.217 0.783 35 H 0.207 0.793 36 H 0.193 0.807 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.920 -24.753 10.589 27.081 hybrid contribution -0.051 0.433 -0.521 0.679 sum -2.971 -24.320 10.069 26.489 Atomic orbital electron populations 1.70112 1.06714 1.25836 1.57048 1.25820 0.96498 1.01556 1.01954 0.84990 0.77881 0.78601 0.77363 1.21257 1.21953 1.18903 1.19429 0.91499 0.83366 1.42708 0.89660 1.45413 1.13885 1.01245 1.73453 1.21279 0.98192 0.84215 0.93900 1.24164 0.90524 1.01336 1.01830 0.84519 1.25122 1.03925 0.91736 0.99972 0.85853 1.21356 0.86089 0.93366 0.92639 1.21491 0.98426 0.84544 0.95173 0.87305 1.45059 1.37739 1.24417 1.24664 1.18238 0.79346 0.82218 0.85076 1.90801 1.51890 1.75303 1.25428 1.21372 0.97496 0.97635 0.95359 1.67524 1.25103 1.22474 1.02335 1.23559 0.96376 0.88876 0.98971 1.22845 0.93648 1.00285 0.96068 1.22352 1.00578 0.96066 0.94695 1.19709 0.90466 0.93761 0.90088 1.84728 1.50840 1.77647 1.17079 0.94086 0.91350 0.96025 0.92579 0.98251 0.74309 0.78268 0.79288 0.80742 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 10.87 21.65 0.24 -58.50 16 2 C -0.06 -3.75 5.40 84.86 0.46 -3.29 16 3 Si 0.98 46.15 29.56 68.60 2.03 48.18 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 N -0.62 -32.92 3.38 -681.32 -2.30 -35.22 16 10 C 0.15 6.41 7.04 86.53 0.61 7.02 16 11 C -0.16 -5.63 6.97 -9.94 -0.07 -5.70 16 12 H 0.14 4.01 8.14 -2.38 -0.02 3.99 16 13 C -0.19 -7.46 7.34 -8.72 -0.06 -7.53 16 14 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 15 C 0.19 10.01 5.76 87.74 0.51 10.51 16 16 C 0.11 4.00 5.93 44.99 0.27 4.27 16 17 H 0.11 4.54 7.40 -2.39 -0.02 4.52 16 18 N -0.67 -20.41 5.55 -445.40 -2.47 -22.89 16 19 C 0.56 18.28 7.80 86.78 0.68 18.96 16 20 O -0.56 -21.81 14.70 17.08 0.25 -21.55 16 21 C 0.02 0.44 6.76 41.93 0.28 0.73 16 22 N -0.46 -9.31 9.54 -184.62 -1.76 -11.07 16 23 C 0.08 0.94 11.17 84.89 0.95 1.89 16 24 C -0.11 -0.78 10.10 22.41 0.23 -0.55 16 25 C -0.11 -1.29 10.12 22.55 0.23 -1.06 16 26 C 0.11 2.28 6.74 22.93 0.15 2.43 16 27 O -0.49 -11.34 11.58 -68.66 -0.80 -12.14 16 28 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 3.26 6.52 -2.39 -0.02 3.25 16 32 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.42 10.81 8.15 -92.71 -0.76 10.05 16 34 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.19 -0.31 8.06 -2.91 -0.02 -0.33 16 36 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.41 6.29 9.06 -74.06 -0.67 5.62 16 Total: -1.00 -79.27 320.16 -0.02 -79.29 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.30 Total: 19.16 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.09 Total: 14.74 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.30 Total: -127.68 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.54 Total: -33.69 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -79.27 -0.02 -79.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958637403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.563 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds