Wall clock time and date at job start Fri Apr 10 2020 17:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00385 * 2 1 4 4 H 1.48496 * 109.47517 * 240.00363 * 3 2 1 5 5 H 1.48507 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46838 * 120.00311 * 3 2 1 7 7 C 1.38813 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.34551 * 32.87885 * 10 9 7 12 12 C 1.51373 * 110.30392 * 270.75087 * 10 9 7 13 13 C 1.38490 * 130.38890 * 78.26562 * 12 10 9 14 14 C 1.38105 * 120.21343 * 179.97438 * 13 12 10 15 15 C 1.38256 * 119.93443 * 0.02562 * 14 13 12 16 16 C 1.38102 * 119.93353 * 359.97438 * 15 14 13 17 17 C 1.38213 * 109.75424 * 258.26199 * 12 10 9 18 18 C 1.51367 * 109.76430 * 0.02562 * 17 12 10 19 19 C 1.54346 * 105.16948 * 342.80804 * 18 17 12 20 20 H 1.09000 * 110.82791 * 144.77167 * 19 18 17 21 21 N 1.46504 * 110.82385 * 268.12572 * 19 18 17 22 22 C 1.34777 * 119.99858 * 273.54756 * 21 19 18 23 23 O 1.21353 * 119.99795 * 359.97438 * 22 21 19 24 24 C 1.49453 * 119.99937 * 180.27545 * 22 21 19 25 25 N 1.34775 * 119.99799 * 179.72511 * 24 22 21 26 26 O 1.21343 * 119.99742 * 359.71852 * 24 22 21 27 27 H 0.97000 * 119.99588 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99957 * 0.02562 * 9 7 2 29 29 H 1.08002 * 119.89562 * 0.02562 * 13 12 10 30 30 H 1.08001 * 120.03592 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.03140 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.89257 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.30179 * 223.88668 * 18 17 12 34 34 H 1.08994 * 110.30713 * 101.72910 * 18 17 12 35 35 H 0.97000 * 119.99825 * 93.53851 * 21 19 18 36 36 H 0.97000 * 119.99929 * 359.97438 * 25 24 22 37 37 H 0.96995 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9912 -3.5562 0.5525 12 6 2.3356 -4.1018 -1.4216 13 6 3.2948 -3.6745 -2.3246 14 6 3.3606 -4.2343 -3.5854 15 6 2.4662 -5.2242 -3.9484 16 6 1.5091 -5.6516 -3.0492 17 6 1.4415 -5.0914 -1.7843 18 6 0.5014 -5.3788 -0.6333 19 6 1.1893 -4.7763 0.6101 20 1 0.4521 -4.3658 1.3001 21 7 2.0251 -5.7765 1.2789 22 6 1.4830 -6.6047 2.1937 23 8 0.3028 -6.5215 2.4636 24 6 2.3369 -7.6210 2.8805 25 7 1.7960 -8.4454 3.7993 26 8 3.5170 -7.7039 2.6108 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 3.9940 -2.9016 -2.0417 30 1 4.1100 -3.8992 -4.2872 31 1 2.5166 -5.6633 -4.9338 32 1 0.8105 -6.4245 -3.3336 33 1 0.3720 -6.4541 -0.5101 34 1 -0.4620 -4.8981 -0.8027 35 1 2.9685 -5.8428 1.0633 36 1 0.8526 -8.3789 4.0151 37 1 2.3500 -9.1052 4.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960299541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:32 Heat of formation + Delta-G solvation = -53.497679 kcal Electronic energy + Delta-G solvation = -22620.508844 eV Core-core repulsion = 19168.804185 eV Total energy + Delta-G solvation = -3451.704659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92626 -40.92233 -39.38629 -37.61905 -35.90731 -34.79277 -33.90222 -32.77490 -31.33776 -29.42410 -27.73694 -26.34628 -24.93167 -23.27704 -21.98050 -21.57398 -21.24709 -19.75922 -19.33980 -18.20976 -17.52328 -17.08247 -16.93287 -16.75839 -16.45811 -15.91445 -15.76263 -15.29127 -15.20321 -15.03734 -14.73232 -14.25721 -14.18820 -13.95546 -13.12266 -12.98196 -12.91975 -12.78900 -12.62525 -12.34261 -12.24879 -12.03776 -11.85162 -11.66081 -11.01254 -10.91263 -10.84009 -10.38170 -9.62861 -9.42131 -9.08426 -7.96361 -5.26662 0.30713 0.55208 0.59532 1.38263 1.48131 1.50001 1.55903 2.10884 2.53328 2.81838 2.95285 3.35692 3.36284 3.57706 3.70978 4.02727 4.08842 4.16241 4.26291 4.30853 4.44471 4.65624 4.72700 4.77902 4.86668 4.93861 5.19606 5.23415 5.33140 5.48601 5.53815 5.64636 5.70679 5.87737 5.90482 6.20823 6.24774 6.27009 6.75600 7.00607 7.30748 7.97861 8.24128 9.26209 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.005441 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.077379 B = 5144.777011 C = 6508.861515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.715 5.715 10 C 0.207 3.793 11 H 0.062 0.938 12 C -0.118 4.118 13 C -0.111 4.111 14 C -0.128 4.128 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.077 4.077 19 C 0.144 3.856 20 H 0.092 0.908 21 N -0.675 5.675 22 C 0.505 3.495 23 O -0.539 6.539 24 C 0.521 3.479 25 N -0.797 5.797 26 O -0.549 6.549 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.417 0.583 36 H 0.423 0.577 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -17.825 0.093 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.097 3.903 11 H 0.079 0.921 12 C -0.121 4.121 13 C -0.130 4.130 14 C -0.146 4.146 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.107 4.107 18 C -0.115 4.115 19 C 0.039 3.961 20 H 0.110 0.890 21 N -0.328 5.328 22 C 0.285 3.715 23 O -0.417 6.417 24 C 0.299 3.701 25 N -0.364 5.364 26 O -0.426 6.426 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.254 0.746 36 H 0.255 0.745 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 4.281 -17.525 0.050 18.040 hybrid contribution 0.079 1.113 0.183 1.130 sum 4.361 -16.412 0.233 16.983 Atomic orbital electron populations 1.69806 1.06579 1.26232 1.58918 1.25502 0.96268 1.00868 1.03274 0.85270 0.77270 0.79367 0.78193 1.20436 1.22272 1.20337 1.19501 0.91387 0.84624 1.41678 0.90502 1.42319 1.05328 0.99844 1.87871 1.19895 0.94525 0.85283 0.90614 0.92053 1.21523 0.95879 0.95873 0.98844 1.20771 0.98591 0.99430 0.94223 1.21303 1.00301 0.97378 0.95633 1.21311 0.95141 0.97521 1.00172 1.20857 0.99645 1.00832 0.92146 1.20656 0.97016 0.97300 0.95710 1.21315 0.97592 1.01784 0.90841 1.21735 0.92950 0.87699 0.93753 0.88952 1.45618 1.14306 1.33463 1.39365 1.20345 0.87768 0.82761 0.80590 1.90770 1.16485 1.70478 1.63917 1.19835 0.86863 0.82353 0.81070 1.43359 1.16397 1.36426 1.40250 1.90817 1.16651 1.70766 1.64380 0.93932 0.79103 0.87364 0.84092 0.83174 0.84431 0.89402 0.89664 0.74583 0.74456 0.74074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.00 9.96 84.03 0.84 -12.16 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.71 -35.20 5.13 -323.30 -1.66 -36.86 16 10 C 0.21 8.09 3.11 44.91 0.14 8.23 16 11 H 0.06 2.42 7.99 -2.39 -0.02 2.40 16 12 C -0.12 -4.32 5.77 -19.60 -0.11 -4.43 16 13 C -0.11 -3.88 10.04 22.30 0.22 -3.66 16 14 C -0.13 -3.65 10.05 22.24 0.22 -3.43 16 15 C -0.12 -3.15 10.05 22.24 0.22 -2.93 16 16 C -0.12 -3.22 10.04 22.30 0.22 -3.00 16 17 C -0.11 -3.44 6.14 -19.60 -0.12 -3.56 16 18 C -0.08 -2.40 6.48 30.52 0.20 -2.20 16 19 C 0.14 4.86 2.94 45.90 0.13 5.00 16 20 H 0.09 3.51 7.64 -2.39 -0.02 3.49 16 21 N -0.68 -19.37 5.14 -439.55 -2.26 -21.63 16 22 C 0.50 13.82 7.89 87.27 0.69 14.51 16 23 O -0.54 -16.72 16.21 -3.26 -0.05 -16.78 16 24 C 0.52 11.92 8.16 87.27 0.71 12.63 16 25 N -0.80 -11.04 8.87 -174.50 -1.55 -12.59 16 26 O -0.55 -15.31 17.31 -3.22 -0.06 -15.37 16 27 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.38 20.03 7.83 -92.71 -0.73 19.30 16 29 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.09 2.41 8.09 -2.39 -0.02 2.39 16 34 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.42 11.29 8.05 -92.71 -0.75 10.55 16 36 H 0.42 4.77 8.30 -92.71 -0.77 4.00 16 37 H 0.42 3.74 8.93 -92.71 -0.83 2.92 16 Total: -1.00 -69.18 326.05 -1.34 -70.51 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -1.91 Total: 41.38 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 3.84 Total: 1.74 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -5.18 Total: -129.06 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.11 Total: -32.15 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -69.18 -1.34 -70.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960299541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds