Wall clock time and date at job start Fri Apr 10 2020 17:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46981 * 299.99662 * 3 2 1 6 6 H 1.48505 * 109.47111 * 59.99852 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 189.10558 * 7 2 1 9 9 N 1.36938 * 119.99940 * 9.10661 * 7 2 1 10 10 C 1.48152 * 127.83752 * 15.56842 * 9 7 2 11 11 C 1.54389 * 104.61821 * 140.41858 * 10 9 7 12 12 H 1.09003 * 117.61605 * 244.78885 * 11 10 9 13 13 C 1.54283 * 104.95976 * 23.86421 * 11 10 9 14 14 H 1.09004 * 121.82223 * 222.18010 * 13 11 10 15 15 C 1.47257 * 127.38230 * 194.68318 * 9 7 2 16 16 C 1.52996 * 118.12511 * 87.19008 * 11 10 9 17 17 H 1.08996 * 117.44306 * 16.10590 * 16 11 10 18 18 N 1.46498 * 117.44256 * 160.81060 * 16 11 10 19 19 C 1.34775 * 120.00049 * 224.23763 * 18 16 11 20 20 O 1.21588 * 119.99839 * 0.02562 * 19 18 16 21 21 C 1.47619 * 120.00222 * 180.02562 * 19 18 16 22 22 C 1.40285 * 120.49851 * 179.72838 * 21 19 18 23 23 C 1.37948 * 118.35591 * 179.71018 * 22 21 19 24 24 C 1.39172 * 119.26246 * 0.58258 * 23 22 21 25 25 O 1.35498 * 119.52673 * 179.70078 * 24 23 22 26 26 N 1.32407 * 120.94865 * 359.67296 * 24 23 22 27 27 C 1.31668 * 121.79849 * 0.02712 * 26 24 23 28 28 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 29 29 H 1.09004 * 110.40665 * 21.63122 * 10 9 7 30 30 H 1.09003 * 110.40712 * 259.20044 * 10 9 7 31 31 H 1.08998 * 109.09030 * 100.70978 * 15 9 7 32 32 H 1.08994 * 111.29684 * 338.57561 * 15 9 7 33 33 H 0.96999 * 120.00188 * 44.24139 * 18 16 11 34 34 H 1.08005 * 120.81980 * 359.97438 * 22 21 19 35 35 H 1.07998 * 120.37077 * 180.30270 * 23 22 21 36 36 H 0.96703 * 113.99712 * 269.97896 * 25 24 23 37 37 H 1.07993 * 119.68325 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7104 11 6 0.0639 -3.8172 -1.6164 12 1 -0.1152 -3.6818 -2.6831 13 6 1.2861 -4.5975 -1.0896 14 1 2.0097 -5.0557 -1.7638 15 6 1.8334 -3.7429 0.0739 16 6 -0.1183 -5.1931 -0.9725 17 1 -0.5681 -5.2278 0.0197 18 7 -0.4525 -6.3130 -1.8559 19 6 -1.4121 -7.1896 -1.4992 20 8 -2.0008 -7.0506 -0.4444 21 6 -1.7485 -8.3184 -2.3890 22 6 -2.7415 -9.2401 -2.0254 23 6 -3.0245 -10.2747 -2.8930 24 6 -2.3133 -10.3767 -4.0849 25 8 -2.5826 -11.3942 -4.9382 26 7 -1.3777 -9.4935 -4.3974 27 6 -1.0797 -8.4876 -3.6017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3432 -1.7020 -1.2913 30 1 -0.7317 -2.7499 0.1079 31 1 1.4310 -4.0927 1.0245 32 1 2.9229 -3.7724 0.0874 33 1 0.0168 -6.4237 -2.6975 34 1 -3.2744 -9.1398 -1.0913 35 1 -3.7862 -11.0000 -2.6479 36 1 -2.0544 -12.1890 -4.7816 37 1 -0.3105 -7.7868 -3.8907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962449081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:35 Heat of formation + Delta-G solvation = 29.680731 kcal Electronic energy + Delta-G solvation = -21632.478758 eV Core-core repulsion = 18184.380985 eV Total energy + Delta-G solvation = -3448.097772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08891 -39.70501 -38.42309 -37.30312 -34.67193 -32.97888 -32.86240 -31.07842 -29.97971 -27.19810 -25.84840 -24.63276 -24.04806 -22.02276 -20.83661 -20.33883 -19.34485 -19.31995 -17.96964 -17.44591 -16.87961 -16.34385 -16.00863 -15.29020 -15.02788 -14.71884 -14.50620 -13.80107 -13.63100 -13.44338 -13.26970 -13.04331 -12.77808 -12.34072 -12.26328 -11.65441 -11.51921 -11.02327 -10.86788 -10.47924 -10.40285 -10.33767 -10.23903 -10.14028 -9.79653 -9.76499 -9.43403 -9.23090 -8.77921 -8.42132 -6.89093 -5.81631 -3.16101 0.14010 0.74079 2.50887 2.90159 3.08713 3.37017 3.42363 3.43030 3.45487 4.10721 4.24336 4.33548 4.43003 4.45984 4.60202 4.79840 5.04142 5.12948 5.31794 5.35122 5.44978 5.52815 5.62216 5.81037 5.85221 5.91346 6.05275 6.19063 6.46309 6.64923 6.71161 6.85520 6.95593 7.33284 7.34704 7.40883 7.52091 7.69817 8.07503 8.19197 9.09092 9.72454 10.47356 11.32827 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.046418 B = 0.002687 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.072568 B =10416.758902 C =10549.333887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.181 4.181 12 H 0.104 0.896 13 C -0.184 4.184 14 H 0.104 0.896 15 C 0.159 3.841 16 C 0.099 3.901 17 H 0.135 0.865 18 N -0.690 5.690 19 C 0.566 3.434 20 O -0.530 6.530 21 C -0.192 4.192 22 C -0.001 4.001 23 C -0.192 4.192 24 C 0.331 3.669 25 O -0.481 6.481 26 N -0.506 5.506 27 C 0.161 3.839 28 H 0.254 0.746 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.405 0.595 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -21.625 -7.417 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.203 4.203 12 H 0.122 0.878 13 C -0.205 4.205 14 H 0.122 0.878 15 C 0.032 3.968 16 C -0.007 4.007 17 H 0.152 0.848 18 N -0.339 5.339 19 C 0.352 3.648 20 O -0.407 6.407 21 C -0.198 4.198 22 C -0.027 4.027 23 C -0.213 4.213 24 C 0.152 3.848 25 O -0.289 6.289 26 N -0.225 5.225 27 C 0.002 3.998 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.264 0.736 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.692 -21.003 -7.648 22.655 hybrid contribution 0.565 0.471 0.198 0.761 sum -3.128 -20.532 -7.450 22.065 Atomic orbital electron populations 1.69909 1.05058 1.25377 1.55667 1.24900 0.95643 0.98016 1.01690 0.86043 0.78857 0.83519 0.77296 1.20364 1.21614 1.21658 1.19038 0.90889 0.82359 1.43431 0.90436 1.44971 1.12951 0.99997 1.73652 1.21081 0.86880 0.92458 0.93697 1.24754 1.02058 0.92778 1.00677 0.87847 1.24362 0.90125 1.02470 1.03556 0.87833 1.20945 0.97061 0.85827 0.93008 1.21866 0.98706 0.84640 0.95476 0.84791 1.45285 1.38164 1.27185 1.23241 1.17834 0.79812 0.81521 0.85655 1.90814 1.51460 1.74499 1.23878 1.21076 1.01535 0.99154 0.98000 1.21683 0.92319 0.89767 0.98918 1.22121 1.03642 1.01642 0.93879 1.19430 0.90020 0.88924 0.86416 1.84726 1.63562 1.24060 1.56545 1.67174 1.16813 1.04676 1.33787 1.22755 0.95822 0.92951 0.88233 0.93544 0.89038 0.95445 0.95719 0.92826 0.76713 0.82728 0.83301 0.73649 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.66 10.86 55.49 0.60 -26.06 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.76 29.56 -169.99 -5.03 16.73 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.30 10.32 -15.06 -0.16 -6.46 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -14.97 3.36 -169.58 -0.57 -15.54 16 10 C 0.18 4.40 5.72 -2.41 -0.01 4.39 16 11 C -0.18 -3.34 7.06 -89.22 -0.63 -3.97 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.18 -3.11 7.03 -89.22 -0.63 -3.73 16 14 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 15 C 0.16 3.25 7.01 -2.90 -0.02 3.23 16 16 C 0.10 1.59 6.00 -67.93 -0.41 1.19 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 18 N -0.69 -8.74 5.52 -54.82 -0.30 -9.04 16 19 C 0.57 7.63 7.77 -12.43 -0.10 7.54 16 20 O -0.53 -9.12 15.98 5.29 0.08 -9.04 16 21 C -0.19 -2.03 5.89 -104.82 -0.62 -2.65 16 22 C 0.00 -0.01 9.70 -38.92 -0.38 -0.38 16 23 C -0.19 -1.48 10.02 -39.34 -0.39 -1.87 16 24 C 0.33 2.98 7.74 -16.96 -0.13 2.85 16 25 O -0.48 -3.52 13.55 -18.19 -0.25 -3.77 16 26 N -0.51 -5.26 10.37 -12.97 -0.13 -5.40 16 27 C 0.16 1.51 10.71 -17.14 -0.18 1.33 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 2.43 6.51 -51.93 -0.34 2.10 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 3.78 6.88 -40.82 -0.28 3.50 16 34 H 0.16 1.34 7.73 -52.48 -0.41 0.94 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.40 0.83 9.06 45.56 0.41 1.24 16 37 H 0.16 1.12 6.41 -52.49 -0.34 0.79 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -34.38 319.81 -7.94 -42.32 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.42 Total: 3.75 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.75 Total: 1.21 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.40 Total: -56.03 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.16 Total: -12.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.38 -7.94 -42.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962449081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds