Wall clock time and date at job start Fri Apr 10 2020 17:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46981 * 299.99662 * 3 2 1 6 6 H 1.48505 * 109.47111 * 59.99852 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 189.10558 * 7 2 1 9 9 N 1.36938 * 119.99940 * 9.10661 * 7 2 1 10 10 C 1.48152 * 127.83752 * 15.56842 * 9 7 2 11 11 C 1.54389 * 104.61821 * 140.41858 * 10 9 7 12 12 H 1.09003 * 117.61605 * 244.78885 * 11 10 9 13 13 C 1.54283 * 104.95976 * 23.86421 * 11 10 9 14 14 H 1.09004 * 121.82223 * 222.18010 * 13 11 10 15 15 C 1.47257 * 127.38230 * 194.68318 * 9 7 2 16 16 C 1.52996 * 118.12511 * 87.19008 * 11 10 9 17 17 H 1.08996 * 117.44306 * 16.10590 * 16 11 10 18 18 N 1.46498 * 117.44256 * 160.81060 * 16 11 10 19 19 C 1.34775 * 120.00049 * 224.23763 * 18 16 11 20 20 O 1.21588 * 119.99839 * 0.02562 * 19 18 16 21 21 C 1.47619 * 120.00222 * 180.02562 * 19 18 16 22 22 C 1.40285 * 120.49851 * 179.72838 * 21 19 18 23 23 C 1.37948 * 118.35591 * 179.71018 * 22 21 19 24 24 C 1.39172 * 119.26246 * 0.58258 * 23 22 21 25 25 O 1.35498 * 119.52673 * 179.70078 * 24 23 22 26 26 N 1.32407 * 120.94865 * 359.67296 * 24 23 22 27 27 C 1.31668 * 121.79849 * 0.02712 * 26 24 23 28 28 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 29 29 H 1.09004 * 110.40665 * 21.63122 * 10 9 7 30 30 H 1.09003 * 110.40712 * 259.20044 * 10 9 7 31 31 H 1.08998 * 109.09030 * 100.70978 * 15 9 7 32 32 H 1.08994 * 111.29684 * 338.57561 * 15 9 7 33 33 H 0.96999 * 120.00188 * 44.24139 * 18 16 11 34 34 H 1.08005 * 120.81980 * 359.97438 * 22 21 19 35 35 H 1.07998 * 120.37077 * 180.30270 * 23 22 21 36 36 H 0.96703 * 113.99712 * 269.97896 * 25 24 23 37 37 H 1.07993 * 119.68325 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7104 11 6 0.0639 -3.8172 -1.6164 12 1 -0.1152 -3.6818 -2.6831 13 6 1.2861 -4.5975 -1.0896 14 1 2.0097 -5.0557 -1.7638 15 6 1.8334 -3.7429 0.0739 16 6 -0.1183 -5.1931 -0.9725 17 1 -0.5681 -5.2278 0.0197 18 7 -0.4525 -6.3130 -1.8559 19 6 -1.4121 -7.1896 -1.4992 20 8 -2.0008 -7.0506 -0.4444 21 6 -1.7485 -8.3184 -2.3890 22 6 -2.7415 -9.2401 -2.0254 23 6 -3.0245 -10.2747 -2.8930 24 6 -2.3133 -10.3767 -4.0849 25 8 -2.5826 -11.3942 -4.9382 26 7 -1.3777 -9.4935 -4.3974 27 6 -1.0797 -8.4876 -3.6017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3432 -1.7020 -1.2913 30 1 -0.7317 -2.7499 0.1079 31 1 1.4310 -4.0927 1.0245 32 1 2.9229 -3.7724 0.0874 33 1 0.0168 -6.4237 -2.6975 34 1 -3.2744 -9.1398 -1.0913 35 1 -3.7862 -11.0000 -2.6479 36 1 -2.0544 -12.1890 -4.7816 37 1 -0.3105 -7.7868 -3.8907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962449081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:34 Heat of formation + Delta-G solvation = 1.667451 kcal Electronic energy + Delta-G solvation = -21633.693505 eV Core-core repulsion = 18184.380985 eV Total energy + Delta-G solvation = -3449.312519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.88645 -40.86818 -39.75571 -37.97605 -36.18951 -34.48273 -33.68297 -32.49334 -31.19557 -28.93486 -27.66171 -25.57440 -24.78907 -23.48698 -21.99770 -21.86808 -20.89621 -19.92110 -19.01678 -18.82292 -18.27335 -17.23517 -16.95545 -16.68323 -16.19070 -16.05564 -15.57293 -15.35787 -14.90127 -14.63297 -14.39022 -14.18244 -13.77297 -13.75822 -13.36519 -13.23251 -12.93471 -12.85714 -12.74547 -12.13536 -12.00677 -11.88835 -11.68730 -11.39129 -11.10937 -10.83844 -10.71686 -10.55767 -10.15804 -9.74068 -8.91912 -7.91739 -5.28428 -0.58646 0.08235 1.47568 1.48043 1.58986 1.59461 1.80331 2.45260 2.48883 2.65761 2.86917 3.27867 3.41681 3.55405 3.65436 3.73743 3.82780 3.90150 3.91952 4.13447 4.18215 4.39719 4.52157 4.54419 4.73429 4.84081 4.88887 4.97871 5.01007 5.27681 5.31553 5.39577 5.45154 5.52971 5.64581 6.17744 6.38008 6.51343 6.75105 7.00692 7.05471 7.68738 8.45156 9.22549 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.046418 B = 0.002687 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.072568 B =10416.758902 C =10549.333887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.188 3.812 11 C -0.188 4.188 12 H 0.124 0.876 13 C -0.159 4.159 14 H 0.144 0.856 15 C 0.150 3.850 16 C 0.121 3.879 17 H 0.109 0.891 18 N -0.676 5.676 19 C 0.569 3.431 20 O -0.574 6.574 21 C -0.207 4.207 22 C -0.005 4.005 23 C -0.183 4.183 24 C 0.332 3.668 25 O -0.488 6.488 26 N -0.529 5.529 27 C 0.169 3.831 28 H 0.249 0.751 29 H 0.057 0.943 30 H -0.005 1.005 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.417 0.583 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.427 0.573 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -23.736 -9.105 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.209 4.209 12 H 0.142 0.858 13 C -0.179 4.179 14 H 0.161 0.839 15 C 0.024 3.976 16 C 0.014 3.986 17 H 0.127 0.873 18 N -0.325 5.325 19 C 0.357 3.643 20 O -0.454 6.454 21 C -0.212 4.212 22 C -0.031 4.031 23 C -0.203 4.203 24 C 0.154 3.846 25 O -0.300 6.300 26 N -0.248 5.248 27 C 0.010 3.990 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.256 0.744 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.290 0.710 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.523 -23.188 -9.371 25.137 hybrid contribution 0.165 0.977 0.739 1.236 sum -2.357 -22.211 -8.632 23.946 Atomic orbital electron populations 1.70116 1.06638 1.25679 1.57277 1.25770 0.96476 1.01437 1.02151 0.84976 0.78370 0.79067 0.76666 1.18636 1.21748 1.22082 1.19452 0.91491 0.83509 1.42362 0.89708 1.45269 1.13335 1.01249 1.74198 1.20788 0.86045 0.93798 0.93130 1.24422 1.04383 0.91511 1.00573 0.85816 1.24268 0.90502 1.01248 1.01916 0.83886 1.21114 0.98067 0.84299 0.94120 1.21375 0.97974 0.84523 0.94774 0.87293 1.45037 1.38238 1.25804 1.23466 1.18255 0.78902 0.81819 0.85314 1.90800 1.52981 1.75643 1.25941 1.20832 1.03222 0.98855 0.98326 1.21824 0.92001 0.89920 0.99334 1.22312 1.03686 1.01405 0.92943 1.19673 0.89368 0.88930 0.86604 1.84676 1.64259 1.24761 1.56275 1.67247 1.17842 1.05375 1.34327 1.23031 0.95692 0.92898 0.87342 0.94157 0.92473 0.98694 0.96581 0.91283 0.74383 0.82675 0.80553 0.70985 0.79569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 10.86 21.65 0.24 -57.33 16 2 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 3 Si 0.98 45.36 29.56 68.60 2.03 47.39 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -13.32 10.32 84.03 0.87 -12.45 16 8 H 0.09 4.47 7.84 -2.91 -0.02 4.44 16 9 N -0.62 -31.67 3.36 -690.43 -2.32 -34.00 16 10 C 0.19 9.35 5.72 86.53 0.49 9.84 16 11 C -0.19 -6.79 7.06 -9.89 -0.07 -6.86 16 12 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 13 C -0.16 -5.01 7.03 -9.89 -0.07 -5.08 16 14 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 15 C 0.15 6.05 7.01 86.71 0.61 6.66 16 16 C 0.12 3.78 6.00 44.99 0.27 4.05 16 17 H 0.11 4.09 7.40 -2.39 -0.02 4.07 16 18 N -0.68 -15.69 5.52 -445.63 -2.46 -18.15 16 19 C 0.57 14.72 7.77 86.72 0.67 15.39 16 20 O -0.57 -19.87 15.98 -3.99 -0.06 -19.93 16 21 C -0.21 -4.01 5.89 -19.99 -0.12 -4.13 16 22 C 0.00 -0.08 9.70 22.70 0.22 0.14 16 23 C -0.18 -2.34 10.02 22.43 0.22 -2.12 16 24 C 0.33 5.09 7.74 84.83 0.66 5.75 16 25 O -0.49 -5.72 13.55 -87.99 -1.19 -6.91 16 26 N -0.53 -9.62 10.37 -307.82 -3.19 -12.81 16 27 C 0.17 2.74 10.71 85.03 0.91 3.65 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.06 3.20 6.51 -2.39 -0.02 3.18 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.42 6.49 6.88 -92.71 -0.64 5.85 16 34 H 0.16 2.56 7.73 -2.91 -0.02 2.54 16 35 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.43 0.45 9.06 -74.06 -0.67 -0.22 16 37 H 0.19 1.91 6.41 -2.91 -0.02 1.90 16 Total: -1.00 -77.16 319.81 -2.01 -79.18 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.18 Total: 10.96 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.13 Total: 11.61 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -7.74 Total: -122.29 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.26 Total: -26.85 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.16 -2.01 -79.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962449081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.845 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds