Wall clock time and date at job start Fri Apr 10 2020 17:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48509 * 109.47028 * 270.00089 * 3 2 1 5 5 H 1.48507 * 109.46934 * 29.99502 * 3 2 1 6 6 H 1.48495 * 109.47585 * 149.99693 * 3 2 1 7 7 C 1.38960 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99953 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99631 * 180.02562 * 7 2 1 10 10 C 1.34788 * 119.99381 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99801 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99378 * 180.02562 * 10 9 7 13 13 N 1.46511 * 109.46583 * 180.02562 * 12 10 9 14 14 C 1.34770 * 119.99717 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99999 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.54929 * 34.41763 * 16 14 13 18 18 C 1.52999 * 117.51845 * 248.71846 * 16 14 13 19 19 C 1.53005 * 117.49884 * 180.08744 * 16 14 13 20 20 H 1.08992 * 117.49816 * 0.02572 * 19 16 14 21 21 C 1.50698 * 117.49376 * 215.02553 * 19 16 14 22 22 C 1.38651 * 120.79150 * 299.71678 * 21 19 16 23 23 C 1.38204 * 119.16183 * 179.80136 * 22 21 19 24 24 N 1.31872 * 120.76556 * 0.49220 * 23 22 21 25 25 C 1.31873 * 121.72455 * 359.73863 * 24 23 22 26 26 C 1.38209 * 120.76055 * 0.02562 * 25 24 23 27 27 H 0.96998 * 119.99345 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00808 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47303 * 60.00144 * 12 10 9 30 30 H 1.08994 * 109.47194 * 299.99844 * 12 10 9 31 31 H 0.96997 * 119.99554 * 359.97438 * 13 12 10 32 32 H 1.09003 * 117.50034 * 0.02562 * 18 16 14 33 33 H 1.08995 * 117.49797 * 145.02631 * 18 16 14 34 34 H 1.08007 * 120.41994 * 0.02562 * 22 21 19 35 35 H 1.08004 * 119.62001 * 180.20644 * 23 22 21 36 36 H 1.07993 * 119.61552 * 180.02562 * 25 24 23 37 37 H 1.08000 * 120.41307 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3707 0.0033 13 7 6.0490 -3.7520 0.0037 14 6 7.3740 -3.9983 0.0042 15 8 8.1622 -3.0764 0.0048 16 6 7.8763 -5.4191 0.0051 17 1 7.2683 -6.1331 -0.5505 18 6 8.5759 -5.9207 1.2700 19 6 9.3914 -5.6328 0.0077 20 1 10.0247 -4.7458 0.0092 21 6 9.9287 -6.8140 -0.7585 22 6 9.5479 -8.1060 -0.4297 23 6 10.0581 -9.1643 -1.1576 24 7 10.9045 -8.9564 -2.1473 25 6 11.2922 -7.7420 -2.4846 26 6 10.8202 -6.6349 -1.8051 27 1 -0.4849 0.8401 -0.0004 28 1 3.8649 -0.3635 0.0014 29 1 5.9233 -1.8565 0.8933 30 1 5.9247 -1.8573 -0.8866 31 1 5.4186 -4.4892 0.0035 32 1 8.6726 -5.2231 2.1020 33 1 8.4282 -6.9646 1.5465 34 1 8.8583 -8.2830 0.3825 35 1 9.7639 -10.1735 -0.9100 36 1 11.9866 -7.6110 -3.3013 37 1 11.1412 -5.6428 -2.0864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128704826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:47 Heat of formation + Delta-G solvation = -9.776736 kcal Electronic energy + Delta-G solvation = -21134.033138 eV Core-core repulsion = 17684.224361 eV Total energy + Delta-G solvation = -3449.808777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79452 -39.82355 -38.52018 -36.92388 -34.58917 -33.81278 -32.29708 -31.84903 -31.48261 -28.37048 -25.30536 -24.70391 -23.81658 -23.19708 -21.17903 -20.14380 -19.63129 -18.67230 -17.87650 -17.00570 -16.45908 -15.93367 -15.81342 -15.48461 -15.33517 -14.97478 -14.49742 -14.26678 -14.15807 -13.90222 -13.75066 -13.22706 -12.74285 -12.50214 -12.33116 -12.22422 -12.20147 -11.91568 -11.39314 -11.27633 -10.86663 -10.68410 -10.10933 -9.98025 -9.78783 -9.74704 -9.55807 -9.46519 -8.99291 -8.83467 -8.35343 -6.45093 -3.97882 0.82217 0.85764 2.44621 2.95633 3.00354 3.05582 3.10324 3.39272 3.50432 3.73057 3.99451 4.11599 4.16356 4.35143 4.45948 4.47886 4.60570 4.75644 4.83740 4.90782 4.95772 5.09463 5.25895 5.35601 5.49515 5.56672 5.60513 5.64876 5.71546 5.73603 5.77420 6.06565 6.37856 6.46210 7.39086 7.63134 7.66517 7.95194 8.24722 8.40631 8.76975 9.24901 9.57860 10.66973 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037680 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.916247 B =11132.193325 C =11372.841320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.549 6.549 16 C -0.169 4.169 17 H 0.128 0.872 18 C -0.139 4.139 19 C -0.092 4.092 20 H 0.132 0.868 21 C -0.006 4.006 22 C -0.174 4.174 23 C 0.100 3.900 24 N -0.491 5.491 25 C 0.100 3.900 26 C -0.163 4.163 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.576 -11.506 -0.076 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.354 5.354 14 C 0.327 3.673 15 O -0.427 6.427 16 C -0.190 4.190 17 H 0.146 0.854 18 C -0.177 4.177 19 C -0.111 4.111 20 H 0.150 0.850 21 C -0.014 4.014 22 C -0.193 4.193 23 C -0.056 4.056 24 N -0.200 5.200 25 C -0.057 4.057 26 C -0.183 4.183 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.789 -12.117 -0.546 24.068 hybrid contribution -0.252 1.878 0.418 1.941 sum 20.537 -10.238 -0.128 22.948 Atomic orbital electron populations 1.69618 1.05716 1.27869 1.47959 1.25078 0.95547 0.98200 0.97083 0.86667 0.79895 0.83739 0.79163 1.19364 1.19926 1.19244 1.19442 0.78921 0.96820 1.48770 0.86057 1.42127 1.07734 1.06129 1.65294 1.19612 0.87999 0.84916 0.85204 1.90540 1.69154 1.30895 1.55723 1.21003 0.93901 0.83891 1.03400 1.45607 1.06819 1.09292 1.73710 1.19472 0.82157 0.89482 0.76162 1.90687 1.55579 1.45792 1.50687 1.22309 0.95396 0.96282 1.05024 0.85405 1.23153 1.00530 1.02939 0.91049 1.21093 0.92422 0.98102 0.99452 0.84983 1.19551 0.94369 0.93399 0.94106 1.22097 1.02335 0.92900 1.01996 1.22762 0.92576 0.99368 0.90913 1.67681 1.12059 1.25011 1.15261 1.22779 0.97303 0.87487 0.98108 1.22043 0.98684 1.01029 0.96557 0.91333 0.79232 0.89640 0.89635 0.74794 0.87289 0.87194 0.84516 0.82670 0.82641 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.67 13.96 55.50 0.77 -23.90 16 2 C 0.05 1.20 5.50 -17.46 -0.10 1.11 16 3 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 9 N -0.58 -13.16 5.09 -10.96 -0.06 -13.22 16 10 C 0.44 9.39 7.85 -10.98 -0.09 9.31 16 11 O -0.58 -14.34 15.24 5.55 0.08 -14.26 16 12 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 13 N -0.70 -10.64 5.53 -61.47 -0.34 -10.98 16 14 C 0.54 7.65 7.61 -10.99 -0.08 7.57 16 15 O -0.55 -9.27 16.26 5.55 0.09 -9.18 16 16 C -0.17 -1.74 5.84 -91.77 -0.54 -2.28 16 17 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -1.14 9.59 -26.73 -0.26 -1.40 16 19 C -0.09 -0.86 5.59 -91.77 -0.51 -1.37 16 20 H 0.13 1.36 7.67 -51.93 -0.40 0.96 16 21 C -0.01 -0.06 5.64 -104.32 -0.59 -0.64 16 22 C -0.17 -1.37 9.39 -39.44 -0.37 -1.74 16 23 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 24 N -0.49 -4.97 10.36 -13.25 -0.14 -5.10 16 25 C 0.10 0.87 11.18 -17.54 -0.20 0.67 16 26 C -0.16 -1.40 9.84 -39.44 -0.39 -1.79 16 27 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.41 6.20 7.44 -40.82 -0.30 5.90 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.66 6.26 -51.93 -0.32 0.34 16 34 H 0.14 0.79 6.16 -52.48 -0.32 0.47 16 35 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -33.20 326.16 -6.98 -40.18 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -4.10 Total: 14.32 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.49 Total: 3.19 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.24 Total: -53.20 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.20 -6.98 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128704826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.398 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds