Wall clock time and date at job start Fri Apr 10 2020 17:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48509 * 109.47028 * 270.00089 * 3 2 1 5 5 H 1.48507 * 109.46934 * 29.99502 * 3 2 1 6 6 H 1.48495 * 109.47585 * 149.99693 * 3 2 1 7 7 C 1.38960 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99953 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99631 * 180.02562 * 7 2 1 10 10 C 1.34788 * 119.99381 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99801 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99378 * 180.02562 * 10 9 7 13 13 N 1.46511 * 109.46583 * 180.02562 * 12 10 9 14 14 C 1.34770 * 119.99717 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99999 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.54929 * 34.41763 * 16 14 13 18 18 C 1.52999 * 117.51845 * 248.71846 * 16 14 13 19 19 C 1.53005 * 117.49884 * 180.08744 * 16 14 13 20 20 H 1.08992 * 117.49816 * 0.02572 * 19 16 14 21 21 C 1.50698 * 117.49376 * 215.02553 * 19 16 14 22 22 C 1.38651 * 120.79150 * 299.71678 * 21 19 16 23 23 C 1.38204 * 119.16183 * 179.80136 * 22 21 19 24 24 N 1.31872 * 120.76556 * 0.49220 * 23 22 21 25 25 C 1.31873 * 121.72455 * 359.73863 * 24 23 22 26 26 C 1.38209 * 120.76055 * 0.02562 * 25 24 23 27 27 H 0.96998 * 119.99345 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00808 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47303 * 60.00144 * 12 10 9 30 30 H 1.08994 * 109.47194 * 299.99844 * 12 10 9 31 31 H 0.96997 * 119.99554 * 359.97438 * 13 12 10 32 32 H 1.09003 * 117.50034 * 0.02562 * 18 16 14 33 33 H 1.08995 * 117.49797 * 145.02631 * 18 16 14 34 34 H 1.08007 * 120.41994 * 0.02562 * 22 21 19 35 35 H 1.08004 * 119.62001 * 180.20644 * 23 22 21 36 36 H 1.07993 * 119.61552 * 180.02562 * 25 24 23 37 37 H 1.08000 * 120.41307 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3707 0.0033 13 7 6.0490 -3.7520 0.0037 14 6 7.3740 -3.9983 0.0042 15 8 8.1622 -3.0764 0.0048 16 6 7.8763 -5.4191 0.0051 17 1 7.2683 -6.1331 -0.5505 18 6 8.5759 -5.9207 1.2700 19 6 9.3914 -5.6328 0.0077 20 1 10.0247 -4.7458 0.0092 21 6 9.9287 -6.8140 -0.7585 22 6 9.5479 -8.1060 -0.4297 23 6 10.0581 -9.1643 -1.1576 24 7 10.9045 -8.9564 -2.1473 25 6 11.2922 -7.7420 -2.4846 26 6 10.8202 -6.6349 -1.8051 27 1 -0.4849 0.8401 -0.0004 28 1 3.8649 -0.3635 0.0014 29 1 5.9233 -1.8565 0.8933 30 1 5.9247 -1.8573 -0.8866 31 1 5.4186 -4.4892 0.0035 32 1 8.6726 -5.2231 2.1020 33 1 8.4282 -6.9646 1.5465 34 1 8.8583 -8.2830 0.3825 35 1 9.7639 -10.1735 -0.9100 36 1 11.9866 -7.6110 -3.3013 37 1 11.1412 -5.6428 -2.0864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128704826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:47 Heat of formation + Delta-G solvation = -34.315738 kcal Electronic energy + Delta-G solvation = -21135.097229 eV Core-core repulsion = 17684.224361 eV Total energy + Delta-G solvation = -3450.872868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58150 -40.90064 -40.11991 -37.80555 -36.30073 -35.33695 -33.85310 -32.96484 -32.08133 -29.81316 -26.76705 -25.59622 -24.76009 -24.02644 -21.88812 -21.50261 -21.17525 -20.44673 -18.87235 -17.91649 -17.52254 -17.07576 -16.85849 -16.78307 -16.56275 -16.37919 -15.66485 -15.56385 -14.97713 -14.87524 -14.74680 -14.50336 -14.33934 -14.06007 -13.67858 -13.51042 -12.98302 -12.94130 -12.56192 -12.46189 -12.09406 -12.01443 -11.61561 -11.59807 -11.07129 -10.68673 -10.42874 -10.35655 -10.27121 -10.20185 -10.06513 -8.47010 -6.09180 0.20305 0.22744 1.29747 1.32830 1.41487 1.42886 1.77369 1.93557 2.19263 2.66801 2.84358 3.03991 3.09170 3.38609 3.60549 3.62848 3.75648 3.84979 3.98445 4.09017 4.18972 4.23707 4.29143 4.37899 4.39027 4.64532 4.77778 4.90664 4.94459 4.98128 5.13562 5.21551 5.43274 5.46928 5.79374 5.86502 6.44603 6.47800 6.76594 7.05139 7.09832 7.27744 7.76009 8.69379 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037680 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.916247 B =11132.193325 C =11372.841320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.117 3.883 13 N -0.706 5.706 14 C 0.543 3.457 15 O -0.577 6.577 16 C -0.179 4.179 17 H 0.142 0.858 18 C -0.122 4.122 19 C -0.088 4.088 20 H 0.120 0.880 21 C -0.017 4.017 22 C -0.171 4.171 23 C 0.090 3.910 24 N -0.518 5.518 25 C 0.090 3.910 26 C -0.172 4.172 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.972 -11.056 0.372 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.011 4.011 13 N -0.359 5.359 14 C 0.331 3.669 15 O -0.458 6.458 16 C -0.200 4.200 17 H 0.159 0.841 18 C -0.159 4.159 19 C -0.107 4.107 20 H 0.138 0.862 21 C -0.025 4.025 22 C -0.190 4.190 23 C -0.066 4.066 24 N -0.228 5.228 25 C -0.066 4.066 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 23.213 -11.689 -0.097 25.990 hybrid contribution -1.001 1.590 0.272 1.898 sum 22.212 -10.099 0.175 24.401 Atomic orbital electron populations 1.69781 1.08038 1.29484 1.49177 1.26082 0.96445 1.02628 0.95703 0.85441 0.79584 0.77011 0.80058 1.18131 1.19811 1.15544 1.19027 0.80960 0.95268 1.50830 0.91838 1.41940 1.06158 1.07466 1.66233 1.20510 0.90071 0.83861 0.82369 1.90528 1.70771 1.32308 1.56404 1.20902 0.89545 0.85465 1.05157 1.45679 1.07446 1.08567 1.74175 1.20032 0.81220 0.90813 0.74824 1.90673 1.56008 1.47127 1.51961 1.22278 0.96221 0.94122 1.07349 0.84061 1.23320 0.98131 1.04348 0.90077 1.21001 0.91400 0.97937 1.00325 0.86202 1.19634 0.94824 0.93693 0.94378 1.22326 1.02204 0.92210 1.02264 1.23196 0.92180 1.00691 0.90533 1.67701 1.13029 1.25747 1.16275 1.23112 0.97635 0.87228 0.98666 1.22228 0.98769 1.01534 0.96613 0.90896 0.77215 0.87703 0.87835 0.74708 0.87456 0.84444 0.82222 0.80526 0.80874 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.96 21.67 0.30 -53.61 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.96 37.56 27.74 68.60 1.90 39.46 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 7 C -0.33 -18.62 10.16 84.04 0.85 -17.77 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.19 16 9 N -0.58 -26.11 5.09 -306.98 -1.56 -27.68 16 10 C 0.44 18.90 7.85 87.65 0.69 19.58 16 11 O -0.61 -31.00 15.24 -3.04 -0.05 -31.05 16 12 C 0.12 3.67 6.15 85.63 0.53 4.20 16 13 N -0.71 -20.29 5.53 -466.77 -2.58 -22.87 16 14 C 0.54 14.38 7.61 87.66 0.67 15.05 16 15 O -0.58 -18.51 16.26 -3.06 -0.05 -18.56 16 16 C -0.18 -3.30 5.84 -11.54 -0.07 -3.37 16 17 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 18 C -0.12 -1.65 9.59 30.60 0.29 -1.36 16 19 C -0.09 -1.47 5.59 -11.54 -0.06 -1.53 16 20 H 0.12 2.32 7.67 -2.39 -0.02 2.30 16 21 C -0.02 -0.27 5.64 -19.67 -0.11 -0.39 16 22 C -0.17 -2.27 9.39 22.36 0.21 -2.06 16 23 C 0.09 1.35 11.18 84.68 0.95 2.29 16 24 N -0.52 -9.83 10.36 -195.84 -2.03 -11.86 16 25 C 0.09 1.46 11.18 84.68 0.95 2.41 16 26 C -0.17 -2.73 9.84 22.36 0.22 -2.51 16 27 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.39 14.80 5.76 -92.71 -0.53 14.26 16 29 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.41 12.01 7.44 -92.71 -0.69 11.32 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.14 1.10 6.26 -2.39 -0.01 1.09 16 34 H 0.16 1.27 6.16 -2.91 -0.02 1.25 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -75.15 326.16 1.36 -73.79 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.15 Total: 37.82 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.58 Total: 14.55 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -5.87 Total: -116.01 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.10 Total: -49.61 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.46 kcal Total: -75.15 1.36 -73.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128704826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.475 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds