Wall clock time and date at job start Fri Apr 10 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47223 * 96.88351 * 3 2 1 5 5 C 1.35426 * 117.00519 * 179.97438 * 4 3 2 6 6 N 1.32243 * 119.79609 * 0.02562 * 5 4 3 7 7 C 1.31872 * 121.79859 * 180.02562 * 6 5 4 8 8 C 1.38360 * 121.18952 * 359.97438 * 7 6 5 9 9 C 1.38328 * 119.45481 * 0.25624 * 8 7 6 10 10 C 1.39993 * 118.34897 * 359.50597 * 9 8 7 11 11 C 1.47527 * 120.59455 * 180.22249 * 10 9 8 12 12 O 1.21597 * 119.99974 * 180.27330 * 11 10 9 13 13 N 1.34775 * 120.00460 * 0.27321 * 11 10 9 14 14 C 1.46495 * 120.00317 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47605 * 180.02562 * 14 13 11 16 16 N 1.46495 * 109.47605 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99995 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00030 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47186 * 59.99580 * 21 19 17 23 23 H 1.48492 * 109.47507 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46909 * 300.00148 * 21 19 17 25 25 H 4.38449 * 5.44522 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47252 * 336.88724 * 3 2 1 27 27 H 1.08997 * 109.47475 * 216.88173 * 3 2 1 28 28 H 1.08006 * 119.40379 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.27035 * 179.97438 * 8 7 6 30 30 H 1.08001 * 120.82512 * 179.74837 * 9 8 7 31 31 H 0.96996 * 119.99954 * 0.02562 * 13 11 10 32 32 H 1.09009 * 109.46910 * 299.99975 * 14 13 11 33 33 H 1.09004 * 109.47780 * 59.99444 * 14 13 11 34 34 H 1.09009 * 109.46830 * 299.99857 * 15 14 13 35 35 H 1.09004 * 109.47141 * 59.98887 * 15 14 13 36 36 H 0.96996 * 119.99729 * 359.97438 * 16 15 14 37 37 H 0.97003 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.1623 -1.3376 5 6 4.4648 0.1848 -1.5138 6 7 5.2668 0.0591 -0.4698 7 6 6.5793 0.0759 -0.5958 8 6 7.1784 0.2262 -1.8339 9 6 6.3872 0.3668 -2.9599 10 6 4.9964 0.3407 -2.8024 11 6 4.1058 0.4812 -3.9702 12 8 2.8992 0.4620 -3.8204 13 7 4.6294 0.6308 -5.2030 14 6 3.7450 0.7708 -6.3624 15 6 4.5870 0.9242 -7.6307 16 7 3.7026 1.0649 -8.7900 17 6 4.2347 1.2170 -10.0426 18 1 5.3064 1.2329 -10.1758 19 6 3.3967 1.3498 -11.1413 20 7 2.0907 1.3289 -10.9791 21 14 4.1224 1.5566 -12.8500 22 1 4.9600 0.3752 -13.1784 23 1 3.0248 1.6771 -13.8428 24 1 4.9596 2.7825 -12.8872 25 1 -1.0501 0.0002 0.0000 26 1 3.0097 -0.9443 0.4034 27 1 3.0090 0.8228 0.6167 28 1 7.1979 -0.0304 0.2832 29 1 8.2549 0.2384 -1.9200 30 1 6.8314 0.4896 -3.9366 31 1 5.5918 0.6457 -5.3226 32 1 3.1164 -0.1156 -6.4491 33 1 3.1155 1.6515 -6.2351 34 1 5.2159 1.8104 -7.5443 35 1 5.2163 0.0433 -7.7578 36 1 2.7402 1.0503 -8.6704 37 1 1.5050 1.4220 -11.7468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148302766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:56 Heat of formation + Delta-G solvation = 41.373672 kcal Electronic energy + Delta-G solvation = -21300.933839 eV Core-core repulsion = 17853.343110 eV Total energy + Delta-G solvation = -3447.590728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16848 -39.10913 -38.31962 -35.65180 -33.97126 -33.63137 -32.94645 -31.24042 -30.85243 -28.01043 -27.46751 -24.92322 -23.66914 -23.09467 -21.49212 -20.69420 -18.95930 -18.73764 -17.73549 -17.22252 -16.94918 -16.55421 -15.47539 -15.40153 -15.26136 -14.68622 -14.59300 -14.29069 -14.16443 -13.45437 -13.40523 -13.19426 -13.14164 -12.83060 -12.52767 -12.05543 -11.43984 -11.10154 -10.95043 -10.82008 -10.79648 -10.39791 -10.29447 -10.28277 -10.14972 -9.82592 -9.62393 -9.00245 -8.90041 -8.72440 -6.99302 -5.79028 -3.09957 0.39546 0.89041 1.99354 2.57099 2.84739 3.13991 3.28350 3.42893 3.47128 3.48670 3.61166 3.91108 4.11886 4.40166 4.50080 4.57881 4.68134 4.85192 5.05841 5.08140 5.11541 5.46106 5.50568 5.55286 5.63687 5.68829 5.79494 5.95116 5.97853 6.16120 6.48740 6.70794 6.74773 6.92277 7.32361 7.37202 7.62363 7.65398 8.33979 8.38737 9.49622 10.04546 10.39296 11.43476 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.002879 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.314484 B = 9724.091141 C =11038.656467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.201 4.201 3 C 0.180 3.820 4 O -0.263 6.263 5 C 0.373 3.627 6 N -0.548 5.548 7 C 0.164 3.836 8 C -0.219 4.219 9 C -0.008 4.008 10 C -0.202 4.202 11 C 0.557 3.443 12 O -0.514 6.514 13 N -0.720 5.720 14 C 0.113 3.887 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.225 0.775 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.387 0.613 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -3.020 25.098 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.202 4.202 3 C 0.105 3.895 4 O -0.167 6.167 5 C 0.193 3.807 6 N -0.272 5.272 7 C 0.007 3.993 8 C -0.239 4.239 9 C -0.034 4.034 10 C -0.208 4.208 11 C 0.343 3.657 12 O -0.389 6.389 13 N -0.373 5.373 14 C -0.011 4.011 15 C 0.017 3.983 16 N -0.375 5.375 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.241 0.759 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.838 -3.091 25.667 27.015 hybrid contribution 0.857 0.196 -1.610 1.835 sum 8.696 -2.895 24.057 25.744 Atomic orbital electron populations 1.25007 0.95856 1.00223 0.96265 1.22274 0.93593 1.01233 1.03054 1.19134 0.84487 1.03282 0.82548 1.86592 1.15947 1.84929 1.29267 1.19748 0.84129 0.88175 0.88609 1.67479 1.06787 1.20862 1.32059 1.22657 0.89047 0.89966 0.97628 1.21949 1.01833 1.07013 0.93092 1.21713 0.91091 0.90455 1.00118 1.20112 0.94340 1.13587 0.92741 1.17739 0.87816 0.77739 0.82450 1.90869 1.14109 1.48788 1.85162 1.45790 1.10456 1.74471 1.06571 1.21592 0.93108 1.02489 0.83898 1.20755 0.93252 0.98199 0.86126 1.42180 1.05241 1.88401 1.01630 1.19145 0.91851 1.42738 0.83886 0.91080 1.24784 0.95349 1.02573 0.98095 1.69661 1.01576 1.56656 1.29963 0.86220 0.77673 0.77938 0.84036 1.21189 1.21607 1.21193 0.75872 0.89108 0.89106 0.81742 0.83706 0.83480 0.76963 0.91124 0.91116 0.95806 0.95802 0.77961 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.20 -2.46 13.73 -37.13 -0.51 -2.97 16 3 C 0.18 2.04 5.78 34.37 0.20 2.24 16 4 O -0.26 -3.90 8.17 -39.74 -0.32 -4.23 16 5 C 0.37 4.87 7.51 -16.61 -0.12 4.74 16 6 N -0.55 -5.71 9.21 -12.98 -0.12 -5.83 16 7 C 0.16 1.18 11.17 -17.49 -0.20 0.98 16 8 C -0.22 -1.41 10.09 -39.50 -0.40 -1.81 16 9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 10 C -0.20 -2.53 5.90 -104.69 -0.62 -3.15 16 11 C 0.56 8.82 7.77 -12.47 -0.10 8.72 16 12 O -0.51 -10.32 15.19 -16.49 -0.25 -10.58 16 13 N -0.72 -10.23 5.51 -61.35 -0.34 -10.57 16 14 C 0.11 1.98 5.79 -4.05 -0.02 1.96 16 15 C 0.14 2.84 6.37 -4.05 -0.03 2.81 16 16 N -0.73 -18.66 5.60 -59.91 -0.34 -18.99 16 17 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 26 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 28 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 29 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.15 0.86 6.52 -52.49 -0.34 0.51 16 31 H 0.40 4.24 6.57 -40.82 -0.27 3.97 16 32 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -36.42 335.70 -6.72 -43.15 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.27 Total: 7.81 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.85 Total: 4.57 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.07 Total: -63.08 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.58 Total: -14.80 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.42 -6.72 -43.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148302766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.522 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds