Wall clock time and date at job start Fri Apr 10 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47223 * 96.88351 * 3 2 1 5 5 C 1.35426 * 117.00519 * 179.97438 * 4 3 2 6 6 N 1.32243 * 119.79609 * 0.02562 * 5 4 3 7 7 C 1.31872 * 121.79859 * 180.02562 * 6 5 4 8 8 C 1.38360 * 121.18952 * 359.97438 * 7 6 5 9 9 C 1.38328 * 119.45481 * 0.25624 * 8 7 6 10 10 C 1.39993 * 118.34897 * 359.50597 * 9 8 7 11 11 C 1.47527 * 120.59455 * 180.22249 * 10 9 8 12 12 O 1.21597 * 119.99974 * 180.27330 * 11 10 9 13 13 N 1.34775 * 120.00460 * 0.27321 * 11 10 9 14 14 C 1.46495 * 120.00317 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47605 * 180.02562 * 14 13 11 16 16 N 1.46495 * 109.47605 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99995 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00030 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47186 * 59.99580 * 21 19 17 23 23 H 1.48492 * 109.47507 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46909 * 300.00148 * 21 19 17 25 25 H 4.38449 * 5.44522 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47252 * 336.88724 * 3 2 1 27 27 H 1.08997 * 109.47475 * 216.88173 * 3 2 1 28 28 H 1.08006 * 119.40379 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.27035 * 179.97438 * 8 7 6 30 30 H 1.08001 * 120.82512 * 179.74837 * 9 8 7 31 31 H 0.96996 * 119.99954 * 0.02562 * 13 11 10 32 32 H 1.09009 * 109.46910 * 299.99975 * 14 13 11 33 33 H 1.09004 * 109.47780 * 59.99444 * 14 13 11 34 34 H 1.09009 * 109.46830 * 299.99857 * 15 14 13 35 35 H 1.09004 * 109.47141 * 59.98887 * 15 14 13 36 36 H 0.96996 * 119.99729 * 359.97438 * 16 15 14 37 37 H 0.97003 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.1623 -1.3376 5 6 4.4648 0.1848 -1.5138 6 7 5.2668 0.0591 -0.4698 7 6 6.5793 0.0759 -0.5958 8 6 7.1784 0.2262 -1.8339 9 6 6.3872 0.3668 -2.9599 10 6 4.9964 0.3407 -2.8024 11 6 4.1058 0.4812 -3.9702 12 8 2.8992 0.4620 -3.8204 13 7 4.6294 0.6308 -5.2030 14 6 3.7450 0.7708 -6.3624 15 6 4.5870 0.9242 -7.6307 16 7 3.7026 1.0649 -8.7900 17 6 4.2347 1.2170 -10.0426 18 1 5.3064 1.2329 -10.1758 19 6 3.3967 1.3498 -11.1413 20 7 2.0907 1.3289 -10.9791 21 14 4.1224 1.5566 -12.8500 22 1 4.9600 0.3752 -13.1784 23 1 3.0248 1.6771 -13.8428 24 1 4.9596 2.7825 -12.8872 25 1 -1.0501 0.0002 0.0000 26 1 3.0097 -0.9443 0.4034 27 1 3.0090 0.8228 0.6167 28 1 7.1979 -0.0304 0.2832 29 1 8.2549 0.2384 -1.9200 30 1 6.8314 0.4896 -3.9366 31 1 5.5918 0.6457 -5.3226 32 1 3.1164 -0.1156 -6.4491 33 1 3.1155 1.6515 -6.2351 34 1 5.2159 1.8104 -7.5443 35 1 5.2163 0.0433 -7.7578 36 1 2.7402 1.0503 -8.6704 37 1 1.5050 1.4220 -11.7468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148302766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:56 Heat of formation + Delta-G solvation = 13.541676 kcal Electronic energy + Delta-G solvation = -21302.140725 eV Core-core repulsion = 17853.343110 eV Total energy + Delta-G solvation = -3448.797614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.00601 -40.30036 -39.14118 -37.30631 -35.56884 -34.48158 -33.94405 -32.93365 -31.72411 -29.50473 -28.46068 -26.12867 -25.10516 -24.05540 -23.07154 -21.86139 -19.79925 -19.60877 -19.27376 -18.59019 -17.88482 -17.44047 -16.83399 -16.61380 -16.41362 -16.03666 -15.61482 -15.40969 -15.30469 -15.12738 -14.77066 -14.55912 -14.11577 -13.88483 -13.29989 -13.10013 -13.03316 -12.87342 -12.62934 -12.54187 -12.12135 -11.86583 -11.80489 -11.26242 -11.22573 -11.05860 -10.97377 -10.65584 -10.21162 -9.57976 -9.06667 -7.96138 -5.27981 -0.36591 0.21740 1.15995 1.48792 1.52862 1.58945 1.70604 1.82816 1.97338 2.45289 2.58214 2.78356 3.21036 3.36061 3.37991 3.65397 3.79345 3.96741 4.02771 4.12305 4.18960 4.20703 4.27626 4.31715 4.50105 4.58713 4.85029 4.92290 5.00866 5.09588 5.12753 5.32695 5.41855 5.49060 6.12632 6.24144 6.46938 6.48667 6.71138 7.18022 7.30280 8.02101 8.25121 9.27520 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.002879 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.314484 B = 9724.091141 C =11038.656467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.250 4.250 3 C 0.179 3.821 4 O -0.299 6.299 5 C 0.350 3.650 6 N -0.557 5.557 7 C 0.167 3.833 8 C -0.200 4.200 9 C -0.002 4.002 10 C -0.232 4.232 11 C 0.555 3.445 12 O -0.569 6.569 13 N -0.705 5.705 14 C 0.129 3.871 15 C 0.150 3.850 16 N -0.748 5.748 17 C -0.249 4.249 18 H 0.085 0.915 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.274 1.274 25 H 0.258 0.742 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.207 0.793 29 H 0.189 0.811 30 H 0.175 0.825 31 H 0.416 0.584 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.373 0.627 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.828 -3.116 25.931 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.250 4.250 3 C 0.106 3.894 4 O -0.205 6.205 5 C 0.171 3.829 6 N -0.282 5.282 7 C 0.010 3.990 8 C -0.220 4.220 9 C -0.028 4.028 10 C -0.238 4.238 11 C 0.343 3.657 12 O -0.448 6.448 13 N -0.359 5.359 14 C 0.005 3.995 15 C 0.024 3.976 16 N -0.392 5.392 17 C -0.380 4.380 18 H 0.103 0.897 19 C -0.270 4.270 20 N -0.623 5.623 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.200 1.200 25 H 0.274 0.726 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.223 0.777 29 H 0.206 0.794 30 H 0.192 0.808 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.205 0.795 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.494 -3.191 26.533 29.091 hybrid contribution -0.124 0.207 -1.707 1.724 sum 11.370 -2.984 24.825 27.468 Atomic orbital electron populations 1.25936 0.96822 0.98701 0.94637 1.22918 0.94727 1.02768 1.04611 1.19260 0.84322 1.04121 0.81743 1.86533 1.17597 1.85474 1.30910 1.19962 0.83896 0.89506 0.89516 1.67552 1.08205 1.21316 1.31134 1.23524 0.88139 0.87549 0.99764 1.22441 1.03703 1.04129 0.91697 1.22089 0.89206 0.89127 1.02345 1.19972 0.95643 1.17126 0.91088 1.18318 0.87670 0.76300 0.83393 1.90833 1.16662 1.51360 1.85985 1.45517 1.11055 1.74018 1.05271 1.21157 0.93012 1.00807 0.84560 1.20847 0.92716 0.99294 0.84781 1.42437 1.05373 1.88536 1.02824 1.19638 0.92558 1.40985 0.84858 0.89682 1.25702 0.95733 1.03314 1.02271 1.69843 1.03048 1.58694 1.30673 0.85107 0.76732 0.78414 0.78854 1.20013 1.22417 1.20017 0.72592 0.88145 0.88142 0.77651 0.79358 0.80807 0.74619 0.92998 0.92985 0.94129 0.94127 0.79542 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 19.25 74.32 1.43 -1.65 16 2 C -0.25 -6.44 13.73 31.12 0.43 -6.02 16 3 C 0.18 4.33 5.78 70.17 0.41 4.73 16 4 O -0.30 -9.47 8.17 -66.40 -0.54 -10.02 16 5 C 0.35 9.25 7.51 85.13 0.64 9.89 16 6 N -0.56 -10.88 9.21 -308.00 -2.84 -13.72 16 7 C 0.17 1.77 11.17 84.72 0.95 2.72 16 8 C -0.20 -1.64 10.09 22.32 0.23 -1.42 16 9 C 0.00 -0.03 9.64 22.72 0.22 0.19 16 10 C -0.23 -5.74 5.90 -19.91 -0.12 -5.86 16 11 C 0.56 18.05 7.77 86.69 0.67 18.72 16 12 O -0.57 -24.37 15.19 16.79 0.26 -24.12 16 13 N -0.70 -19.74 5.51 -466.27 -2.57 -22.31 16 14 C 0.13 4.64 5.79 86.38 0.50 5.14 16 15 C 0.15 5.75 6.37 86.38 0.55 6.30 16 16 N -0.75 -38.48 5.60 -343.45 -1.92 -40.40 16 17 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 18 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 21 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H 0.26 3.08 7.80 -4.41 -0.03 3.04 16 26 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 27 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 28 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 29 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 30 H 0.17 1.30 6.52 -2.91 -0.02 1.28 16 31 H 0.42 8.02 6.57 -92.71 -0.61 7.41 16 32 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 37 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -83.25 335.70 1.69 -81.56 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.21 Total: 25.74 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 7.21 Total: 15.78 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -7.05 Total: -136.73 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.29 Total: -34.13 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -83.25 1.69 -81.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148302766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.104 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds