Wall clock time and date at job start Fri Apr 10 2020 17:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38150 * 119.54873 * 2 1 4 4 C 1.39822 * 118.99907 * 179.97438 * 3 2 1 5 5 C 1.48139 * 120.91925 * 179.97438 * 4 3 2 6 6 O 1.21521 * 119.99935 * 219.71447 * 5 4 3 7 7 N 1.34778 * 120.00161 * 39.72069 * 5 4 3 8 8 C 1.46498 * 119.99916 * 355.79170 * 7 5 4 9 9 C 1.46498 * 120.00149 * 175.79507 * 7 5 4 10 10 C 1.53501 * 114.20776 * 119.99548 * 9 7 5 11 11 N 1.47066 * 87.98138 * 87.52319 * 10 9 7 12 12 C 1.36938 * 136.05419 * 207.08799 * 11 10 9 13 13 H 1.08002 * 119.99997 * 7.30365 * 12 11 10 14 14 C 1.38812 * 119.99812 * 187.30755 * 12 11 10 15 15 N 1.31623 * 119.99777 * 194.82490 * 14 12 11 16 16 Si 1.86801 * 120.00274 * 14.82997 * 14 12 11 17 17 H 1.48500 * 109.46761 * 270.00135 * 16 14 12 18 18 H 1.48498 * 109.46988 * 29.99712 * 16 14 12 19 19 H 1.48500 * 109.47420 * 149.99810 * 16 14 12 20 20 C 1.47061 * 87.88841 * 27.34303 * 11 10 9 21 21 C 1.39816 * 118.15275 * 0.25514 * 4 3 2 22 22 C 1.38148 * 119.00368 * 359.52550 * 21 4 3 23 23 C 1.50696 * 119.55362 * 180.22973 * 22 21 4 24 24 N 1.31808 * 119.55295 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47602 * 90.00019 * 1 2 3 26 26 H 1.09004 * 109.47353 * 209.99350 * 1 2 3 27 27 H 1.09000 * 109.47610 * 329.99884 * 1 2 3 28 28 H 1.08001 * 120.49660 * 0.02611 * 3 2 1 29 29 H 1.08998 * 109.46998 * 274.68300 * 8 7 5 30 30 H 1.09002 * 109.47203 * 34.68518 * 8 7 5 31 31 H 1.09001 * 109.46670 * 154.68587 * 8 7 5 32 32 H 1.09010 * 113.28351 * 346.93433 * 9 7 5 33 33 H 1.08997 * 113.46979 * 332.74078 * 10 9 7 34 34 H 1.09001 * 113.46385 * 202.29857 * 10 9 7 35 35 H 0.96996 * 120.00268 * 354.94162 * 15 14 12 36 36 H 1.09005 * 113.47156 * 87.43849 * 20 11 10 37 37 H 1.08998 * 113.47032 * 217.87701 * 20 11 10 38 38 H 1.08004 * 120.49662 * 179.72138 * 21 4 3 39 39 H 1.09001 * 109.47140 * 270.25231 * 23 22 21 40 40 H 1.09000 * 109.47350 * 30.24682 * 23 22 21 41 41 H 1.08999 * 109.47854 * 150.25271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1884 0.0005 5 6 4.3598 2.4519 0.0000 6 8 5.3677 2.5471 -0.6721 7 7 3.9456 3.4959 0.7450 8 6 2.6825 3.4140 1.4827 9 6 4.7584 4.7126 0.8172 10 6 4.0456 5.9763 0.3160 11 7 3.5159 6.1542 1.6764 12 6 2.4101 6.7371 2.2355 13 1 1.6193 7.1122 1.6028 14 6 2.3057 6.8459 3.6154 15 7 1.1448 7.1292 4.1672 16 14 3.8127 6.5903 4.6892 17 1 3.9193 5.1561 5.0592 18 1 5.0285 7.0002 3.9415 19 1 3.6884 7.4113 5.9203 20 6 4.6996 5.4362 2.1725 21 6 4.2343 -0.0506 -0.0044 22 6 3.4740 -1.2040 0.0004 23 6 4.1594 -2.5461 0.0004 24 7 2.1571 -1.1466 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5137 27 1 -0.3634 0.8899 0.5138 28 1 1.6490 2.1376 0.0004 29 1 1.8595 3.6966 0.8263 30 1 2.5327 2.3932 1.8345 31 1 2.7156 4.0913 2.3361 32 1 5.7661 4.5816 0.4226 33 1 3.2744 5.7739 -0.4272 34 1 4.7296 6.7678 0.0096 35 1 0.3792 7.3342 3.6081 36 1 5.5560 6.0853 2.3555 37 1 4.4855 4.7736 3.0111 38 1 5.3129 -0.1051 -0.0087 39 1 4.3250 -2.8695 -1.0273 40 1 5.1171 -2.4650 0.5145 41 1 3.5320 -3.2746 0.5138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042795637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:43 Heat of formation + Delta-G solvation = 75.793210 kcal Electronic energy + Delta-G solvation = -23279.159172 eV Core-core repulsion = 19968.894081 eV Total energy + Delta-G solvation = -3310.265091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93791 -39.69908 -38.01452 -34.70631 -33.78261 -32.87523 -32.17807 -29.25810 -28.39654 -27.01198 -26.39548 -25.35840 -24.54478 -22.20146 -22.01736 -20.20056 -18.68110 -17.61020 -17.15897 -16.62972 -16.25933 -15.93827 -15.22918 -14.98440 -14.69049 -14.33570 -13.93618 -13.82621 -13.46461 -13.36698 -13.32973 -12.91222 -12.81035 -12.54869 -12.27766 -12.20529 -11.94498 -11.83602 -11.42662 -11.32086 -10.94559 -10.67031 -10.32430 -10.18806 -9.84741 -9.71350 -9.45368 -9.30896 -8.89812 -8.78849 -8.30973 -7.28553 -6.39246 -3.32961 0.75929 0.94174 2.75058 3.05003 3.32710 3.41066 3.54509 3.61736 4.00474 4.33788 4.49159 4.54112 4.66451 4.86747 4.89719 5.05567 5.19030 5.30229 5.30565 5.35252 5.37526 5.46818 5.47804 5.53533 5.70298 5.76464 5.80332 5.89596 5.92252 5.95464 5.98752 6.14032 6.16679 6.27676 6.32334 6.51384 6.58211 6.88760 7.00099 7.58225 7.83212 8.14674 8.18971 8.87724 9.39784 10.26639 11.09998 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.004670 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.644200 B = 5994.043599 C = 6551.877824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.129 3.871 3 C -0.150 4.150 4 C -0.068 4.068 5 C 0.556 3.444 6 O -0.539 6.539 7 N -0.569 5.569 8 C 0.075 3.925 9 C 0.097 3.903 10 C 0.107 3.893 11 N -0.622 5.622 12 C -0.304 4.304 13 H 0.082 0.918 14 C -0.021 4.021 15 N -0.929 5.929 16 Si 1.057 2.943 17 H -0.294 1.294 18 H -0.281 1.281 19 H -0.294 1.294 20 C 0.091 3.909 21 C -0.130 4.130 22 C 0.126 3.874 23 C -0.101 4.101 24 N -0.476 5.476 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -15.620 -7.647 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.009 4.009 3 C -0.170 4.170 4 C -0.079 4.079 5 C 0.344 3.656 6 O -0.417 6.417 7 N -0.299 5.299 8 C -0.067 4.067 9 C -0.008 4.008 10 C -0.021 4.021 11 N -0.350 5.350 12 C -0.431 4.431 13 H 0.100 0.900 14 C -0.221 4.221 15 N -0.571 5.571 16 Si 0.888 3.112 17 H -0.221 1.221 18 H -0.208 1.208 19 H -0.222 1.222 20 C -0.035 4.035 21 C -0.150 4.150 22 C -0.012 4.012 23 C -0.159 4.159 24 N -0.187 5.187 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.941 -16.249 -6.302 17.869 hybrid contribution -0.076 1.266 -1.546 2.000 sum 3.865 -14.983 -7.848 17.350 Atomic orbital electron populations 1.20741 0.88282 1.03886 1.03242 1.21230 0.97159 0.87664 0.94837 1.22525 0.93593 1.00519 1.00372 1.20308 0.93996 0.94134 0.99481 1.18242 0.84457 0.82996 0.79942 1.90752 1.25913 1.83093 1.41955 1.47294 1.22693 1.13602 1.46326 1.22221 0.83934 1.02013 0.98580 1.22587 0.94585 0.84146 0.99482 1.22803 0.95585 0.93302 0.90387 1.46436 1.19800 1.66643 1.02159 1.20127 0.92959 1.37901 0.92074 0.89988 1.25709 1.02822 0.99467 0.94070 1.70905 0.99903 1.48983 1.37316 0.83856 0.75260 0.76174 0.75870 1.22149 1.20752 1.22170 1.23120 0.91627 0.93549 0.95201 1.21969 1.01698 0.91164 1.00210 1.21196 0.89190 0.95592 0.95206 1.20703 0.99839 0.92144 1.03186 1.67202 1.09610 1.29616 1.12287 0.90298 0.90309 0.90198 0.83326 0.92316 0.92221 0.87523 0.87470 0.93373 0.93451 0.92757 0.92246 0.92586 0.84059 0.90316 0.90542 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.16 36.00 0.37 -0.61 16 2 C 0.13 1.60 6.78 -82.64 -0.56 1.04 16 3 C -0.15 -1.98 7.34 -39.02 -0.29 -2.26 16 4 C -0.07 -1.00 5.22 -104.65 -0.55 -1.54 16 5 C 0.56 9.39 7.40 -12.19 -0.09 9.30 16 6 O -0.54 -10.31 16.48 5.35 0.09 -10.22 16 7 N -0.57 -9.79 3.12 -174.56 -0.54 -10.33 16 8 C 0.07 1.25 8.09 59.85 0.48 1.74 16 9 C 0.10 1.73 4.67 -67.68 -0.32 1.42 16 10 C 0.11 2.05 8.31 -8.50 -0.07 1.98 16 11 N -0.62 -14.10 2.32 -184.62 -0.43 -14.53 16 12 C -0.30 -8.10 10.49 -15.06 -0.16 -8.26 16 13 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 14 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 15 N -0.93 -27.79 13.70 55.49 0.76 -27.03 16 16 Si 1.06 25.29 25.49 -169.99 -4.33 20.96 16 17 H -0.29 -6.73 6.97 56.52 0.39 -6.34 16 18 H -0.28 -6.26 5.62 56.52 0.32 -5.94 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 C 0.09 1.82 4.62 -8.37 -0.04 1.78 16 21 C -0.13 -1.69 9.39 -39.02 -0.37 -2.06 16 22 C 0.13 1.52 6.78 -82.64 -0.56 0.96 16 23 C -0.10 -0.85 10.16 36.00 0.37 -0.49 16 24 N -0.48 -6.21 10.16 -5.79 -0.06 -6.27 16 25 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.15 1.85 5.49 -52.49 -0.29 1.56 16 29 H 0.06 0.95 6.90 -51.93 -0.36 0.59 16 30 H 0.06 0.88 5.91 -51.93 -0.31 0.58 16 31 H 0.11 2.16 5.10 -51.93 -0.26 1.89 16 32 H 0.11 1.81 7.32 -51.92 -0.38 1.43 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.76 8.73 -40.82 -0.36 7.40 16 36 H 0.06 1.15 7.03 -51.93 -0.37 0.79 16 37 H 0.06 1.15 5.37 -51.93 -0.28 0.87 16 38 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -31.72 328.86 -7.14 -38.86 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.71 Total: 1.31 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.87 Total: 2.31 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.27 Total: -58.17 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.33 Total: 20.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.72 -7.14 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042795637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.650 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds