Wall clock time and date at job start Fri Apr 10 2020 17:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38606 * 120.32491 * 2 1 4 4 N 1.31492 * 120.89895 * 179.97438 * 3 2 1 5 5 C 1.32752 * 121.64684 * 0.02562 * 4 3 2 6 6 C 1.48165 * 119.72032 * 179.97438 * 5 4 3 7 7 O 1.21515 * 119.99273 * 104.71795 * 6 5 4 8 8 N 1.34773 * 120.00593 * 284.43466 * 6 5 4 9 9 C 1.46501 * 119.99549 * 355.22068 * 8 6 5 10 10 C 1.46498 * 120.00251 * 175.21634 * 8 6 5 11 11 C 1.53944 * 113.74169 * 218.74269 * 10 8 6 12 12 N 1.47818 * 86.03568 * 222.08604 * 11 10 8 13 13 C 1.36932 * 134.45366 * 204.64069 * 12 11 10 14 14 H 1.08001 * 119.99648 * 179.86185 * 13 12 11 15 15 C 1.38816 * 120.00174 * 359.87230 * 13 12 11 16 16 N 1.31621 * 119.99884 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46769 * 60.00140 * 17 15 13 19 19 H 1.48496 * 109.46792 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47167 * 300.00102 * 17 15 13 21 21 C 1.47577 * 91.04862 * 24.55188 * 12 11 10 22 22 C 1.39269 * 120.55049 * 0.25874 * 5 4 3 23 23 C 1.50699 * 120.46601 * 179.72040 * 22 5 4 24 24 C 1.38580 * 120.32251 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46856 * 90.00440 * 1 2 3 26 26 H 1.09000 * 109.47054 * 209.99775 * 1 2 3 27 27 H 1.08997 * 109.47312 * 330.00755 * 1 2 3 28 28 H 1.07994 * 119.54754 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47590 * 94.76721 * 9 8 6 30 30 H 1.09001 * 109.47030 * 214.77170 * 9 8 6 31 31 H 1.09000 * 109.47502 * 334.76462 * 9 8 6 32 32 H 1.09000 * 112.94534 * 350.33671 * 10 8 6 33 33 H 1.09002 * 113.76898 * 336.34504 * 11 10 8 34 34 H 1.08992 * 113.76891 * 107.74487 * 11 10 8 35 35 H 0.96998 * 119.99497 * 179.97438 * 16 15 13 36 36 H 1.09002 * 113.76604 * 221.15219 * 21 12 11 37 37 H 1.09003 * 113.77443 * 89.75663 * 21 12 11 38 38 H 1.08998 * 109.47396 * 84.88836 * 23 22 5 39 39 H 1.08999 * 109.47026 * 204.89244 * 23 22 5 40 40 H 1.09001 * 109.47318 * 324.88718 * 23 22 5 41 41 H 1.07997 * 120.76167 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0865 0.0005 6 6 5.7097 0.1512 0.0005 7 8 6.3283 -0.0895 1.0184 8 7 6.3704 0.4712 -1.1297 9 6 5.6331 0.6525 -2.3827 10 6 7.8257 0.6378 -1.1054 11 6 8.3319 1.7942 -1.9866 12 7 9.4114 0.8720 -2.3980 13 6 10.6809 1.0376 -2.8839 14 1 11.2884 0.1745 -3.1125 15 6 11.1869 2.3149 -3.0825 16 7 10.4463 3.3668 -2.8042 17 14 12.9190 2.5408 -3.7447 18 1 13.0255 1.9009 -5.0806 19 1 13.2175 3.9904 -3.8655 20 1 13.8905 1.9105 -2.8151 21 6 8.5729 -0.2980 -2.0728 22 6 3.5923 -1.1518 -0.0054 23 6 4.3977 -2.4255 -0.0117 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6648 2.1305 0.0004 29 1 5.4060 1.7096 -2.5210 30 1 6.2405 0.2993 -3.2160 31 1 4.7043 0.0835 -2.3434 32 1 8.2359 0.6435 -0.0956 33 1 7.6509 2.0615 -2.7946 34 1 8.6818 2.6573 -1.4204 35 1 10.8001 4.2593 -2.9427 36 1 9.1149 -1.1022 -1.5752 37 1 7.9627 -0.6466 -2.9061 38 1 4.6694 -2.6887 1.0105 39 1 3.8039 -3.2287 -0.4481 40 1 5.3023 -2.2805 -0.6022 41 1 1.6845 -2.1416 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043413516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:07 Heat of formation + Delta-G solvation = 59.307737 kcal Electronic energy + Delta-G solvation = -22883.534136 eV Core-core repulsion = 19572.554181 eV Total energy + Delta-G solvation = -3310.979955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90521 -39.29302 -37.50486 -34.49746 -33.82963 -33.72914 -31.93136 -28.36421 -27.69714 -27.42409 -26.55424 -24.81496 -24.18026 -22.99903 -21.67345 -20.20433 -18.59656 -17.50687 -17.13549 -16.85556 -16.28836 -15.19953 -14.87114 -14.75442 -14.52516 -14.51382 -13.80503 -13.60236 -13.45039 -13.33784 -12.95601 -12.72290 -12.64645 -12.61944 -12.42790 -12.09141 -11.84634 -11.75590 -11.52761 -11.29465 -10.88286 -10.70518 -10.28304 -10.11981 -9.98679 -9.81384 -9.55177 -9.40901 -8.91750 -8.79929 -8.15984 -6.91217 -5.77749 -3.10974 0.71260 1.04895 2.66076 3.15140 3.40824 3.44509 3.45968 3.50815 4.21967 4.39092 4.46615 4.48693 4.67228 4.72745 4.90747 5.12504 5.18214 5.21486 5.30386 5.33607 5.46276 5.46813 5.49638 5.52230 5.59782 5.77651 5.87748 5.90753 5.94614 5.97383 6.09586 6.16326 6.42344 6.43587 6.57284 6.76847 7.20364 7.32444 7.51834 7.69405 7.72245 7.95563 8.33141 9.02657 9.68951 10.55732 11.39297 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.003387 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.313521 B = 8264.944618 C = 8590.996169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C 0.095 3.905 4 N -0.447 5.447 5 C 0.095 3.905 6 C 0.575 3.425 7 O -0.531 6.531 8 N -0.584 5.584 9 C 0.084 3.916 10 C 0.090 3.910 11 C 0.158 3.842 12 N -0.605 5.605 13 C -0.225 4.225 14 H 0.081 0.919 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.915 3.085 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.109 3.891 22 C -0.097 4.097 23 C -0.115 4.115 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 -9.014 3.276 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.065 4.065 4 N -0.156 5.156 5 C -0.044 4.044 6 C 0.360 3.640 7 O -0.407 6.407 8 N -0.316 5.316 9 C -0.059 4.059 10 C -0.013 4.013 11 C 0.032 3.968 12 N -0.332 5.332 13 C -0.352 4.352 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.018 4.018 22 C -0.099 4.099 23 C -0.172 4.172 24 C -0.107 4.107 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.311 -8.132 3.692 22.187 hybrid contribution 0.294 -0.485 -0.576 0.808 sum -20.017 -8.617 3.116 22.015 Atomic orbital electron populations 1.20740 0.89959 1.03258 1.02755 1.21095 0.97699 0.94105 1.00060 1.22719 0.89319 0.97657 0.96786 1.67668 1.08297 1.29686 1.09952 1.21041 0.94705 0.89186 0.99490 1.17933 0.85326 0.76902 0.83860 1.90783 1.67953 1.49428 1.32521 1.47954 1.08448 1.66952 1.08233 1.21723 0.95794 1.01916 0.86517 1.24138 0.75571 1.00065 1.01515 1.22658 0.87372 0.93539 0.93199 1.45687 1.10347 1.00838 1.76337 1.18940 0.87224 0.92523 1.36517 0.90077 1.24811 0.98575 0.95238 1.01678 1.69808 1.36145 0.97363 1.53306 0.86164 0.83783 0.76828 0.78754 1.21164 1.21517 1.20986 1.22964 0.91784 0.92490 0.94570 1.20828 0.94528 0.95796 0.98790 1.20810 0.99600 0.93245 1.03587 1.21327 0.92750 0.98446 0.98140 0.90662 0.91249 0.90970 0.82294 0.91979 0.90344 0.92297 0.86535 0.94907 0.90379 0.93465 0.93368 0.94682 0.90003 0.90906 0.90831 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.03 36.01 0.36 -0.22 16 2 C -0.13 -1.13 5.91 -104.36 -0.62 -1.74 16 3 C 0.09 1.02 10.86 -17.56 -0.19 0.83 16 4 N -0.45 -6.56 10.29 -9.80 -0.10 -6.66 16 5 C 0.10 1.44 4.58 -83.01 -0.38 1.06 16 6 C 0.57 10.38 5.86 -12.18 -0.07 10.31 16 7 O -0.53 -11.23 16.61 5.35 0.09 -11.14 16 8 N -0.58 -10.34 3.09 -176.74 -0.55 -10.88 16 9 C 0.08 1.23 8.83 59.85 0.53 1.76 16 10 C 0.09 1.87 4.38 -70.15 -0.31 1.56 16 11 C 0.16 3.81 7.01 -2.84 -0.02 3.79 16 12 N -0.61 -15.75 3.70 -177.88 -0.66 -16.41 16 13 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 14 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 16 N -0.92 -27.46 11.39 55.49 0.63 -26.82 16 17 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 C 0.11 2.29 8.48 -2.97 -0.03 2.27 16 22 C -0.10 -1.16 5.93 -104.09 -0.62 -1.78 16 23 C -0.12 -1.21 9.55 36.01 0.34 -0.87 16 24 C -0.08 -0.75 9.52 -39.31 -0.37 -1.13 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 27 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.92 8.05 -51.93 -0.42 0.51 16 30 H 0.08 1.15 6.56 -51.93 -0.34 0.81 16 31 H 0.06 0.75 6.80 -51.93 -0.35 0.40 16 32 H 0.12 2.61 7.26 -51.93 -0.38 2.23 16 33 H 0.03 0.78 6.87 -51.93 -0.36 0.42 16 34 H 0.08 2.11 7.17 -51.93 -0.37 1.74 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.69 6.79 -51.93 -0.35 0.34 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 40 H 0.07 0.88 7.28 -51.93 -0.38 0.50 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -34.06 340.81 -7.97 -42.02 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.87 Total: -1.54 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.63 Total: 9.06 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.67 Total: -60.78 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.06 -7.97 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043413516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.331 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds