Wall clock time and date at job start Fri Apr 10 2020 17:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38606 * 120.32491 * 2 1 4 4 N 1.31492 * 120.89895 * 179.97438 * 3 2 1 5 5 C 1.32752 * 121.64684 * 0.02562 * 4 3 2 6 6 C 1.48165 * 119.72032 * 179.97438 * 5 4 3 7 7 O 1.21515 * 119.99273 * 104.71795 * 6 5 4 8 8 N 1.34773 * 120.00593 * 284.43466 * 6 5 4 9 9 C 1.46501 * 119.99549 * 355.22068 * 8 6 5 10 10 C 1.46498 * 120.00251 * 175.21634 * 8 6 5 11 11 C 1.53944 * 113.74169 * 218.74269 * 10 8 6 12 12 N 1.47818 * 86.03568 * 222.08604 * 11 10 8 13 13 C 1.36932 * 134.45366 * 204.64069 * 12 11 10 14 14 H 1.08001 * 119.99648 * 179.86185 * 13 12 11 15 15 C 1.38816 * 120.00174 * 359.87230 * 13 12 11 16 16 N 1.31621 * 119.99884 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46769 * 60.00140 * 17 15 13 19 19 H 1.48496 * 109.46792 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47167 * 300.00102 * 17 15 13 21 21 C 1.47577 * 91.04862 * 24.55188 * 12 11 10 22 22 C 1.39269 * 120.55049 * 0.25874 * 5 4 3 23 23 C 1.50699 * 120.46601 * 179.72040 * 22 5 4 24 24 C 1.38580 * 120.32251 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46856 * 90.00440 * 1 2 3 26 26 H 1.09000 * 109.47054 * 209.99775 * 1 2 3 27 27 H 1.08997 * 109.47312 * 330.00755 * 1 2 3 28 28 H 1.07994 * 119.54754 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47590 * 94.76721 * 9 8 6 30 30 H 1.09001 * 109.47030 * 214.77170 * 9 8 6 31 31 H 1.09000 * 109.47502 * 334.76462 * 9 8 6 32 32 H 1.09000 * 112.94534 * 350.33671 * 10 8 6 33 33 H 1.09002 * 113.76898 * 336.34504 * 11 10 8 34 34 H 1.08992 * 113.76891 * 107.74487 * 11 10 8 35 35 H 0.96998 * 119.99497 * 179.97438 * 16 15 13 36 36 H 1.09002 * 113.76604 * 221.15219 * 21 12 11 37 37 H 1.09003 * 113.77443 * 89.75663 * 21 12 11 38 38 H 1.08998 * 109.47396 * 84.88836 * 23 22 5 39 39 H 1.08999 * 109.47026 * 204.89244 * 23 22 5 40 40 H 1.09001 * 109.47318 * 324.88718 * 23 22 5 41 41 H 1.07997 * 120.76167 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0865 0.0005 6 6 5.7097 0.1512 0.0005 7 8 6.3283 -0.0895 1.0184 8 7 6.3704 0.4712 -1.1297 9 6 5.6331 0.6525 -2.3827 10 6 7.8257 0.6378 -1.1054 11 6 8.3319 1.7942 -1.9866 12 7 9.4114 0.8720 -2.3980 13 6 10.6809 1.0376 -2.8839 14 1 11.2884 0.1745 -3.1125 15 6 11.1869 2.3149 -3.0825 16 7 10.4463 3.3668 -2.8042 17 14 12.9190 2.5408 -3.7447 18 1 13.0255 1.9009 -5.0806 19 1 13.2175 3.9904 -3.8655 20 1 13.8905 1.9105 -2.8151 21 6 8.5729 -0.2980 -2.0728 22 6 3.5923 -1.1518 -0.0054 23 6 4.3977 -2.4255 -0.0117 24 6 2.2067 -1.1962 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6648 2.1305 0.0004 29 1 5.4060 1.7096 -2.5210 30 1 6.2405 0.2993 -3.2160 31 1 4.7043 0.0835 -2.3434 32 1 8.2359 0.6435 -0.0956 33 1 7.6509 2.0615 -2.7946 34 1 8.6818 2.6573 -1.4204 35 1 10.8001 4.2593 -2.9427 36 1 9.1149 -1.1022 -1.5752 37 1 7.9627 -0.6466 -2.9061 38 1 4.6694 -2.6887 1.0105 39 1 3.8039 -3.2287 -0.4481 40 1 5.3023 -2.2805 -0.6022 41 1 1.6845 -2.1416 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043413516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:05 Heat of formation + Delta-G solvation = 36.583353 kcal Electronic energy + Delta-G solvation = -22884.519539 eV Core-core repulsion = 19572.554181 eV Total energy + Delta-G solvation = -3311.965358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98306 -40.66389 -39.15440 -36.03055 -34.69132 -34.61398 -33.91923 -29.90428 -28.67492 -28.41263 -27.96527 -26.67449 -25.50504 -24.33477 -22.73356 -21.49543 -20.22038 -18.96216 -18.64745 -18.07393 -17.79293 -16.95715 -16.22537 -16.08140 -15.70227 -15.45858 -15.35116 -14.86864 -14.55764 -14.09920 -14.05122 -13.97065 -13.70357 -13.44033 -13.40816 -13.32255 -13.26501 -13.20473 -13.16260 -12.81397 -12.59582 -12.51667 -12.15122 -12.01132 -11.57837 -11.31771 -10.88829 -10.58908 -10.44527 -9.77379 -9.69816 -8.99556 -7.93731 -5.29042 -0.16408 0.25609 1.31150 1.45151 1.49453 1.55571 1.80250 2.47071 2.62970 3.10611 3.26087 3.40545 3.58911 3.74457 3.75907 3.93715 4.00912 4.09814 4.20734 4.24531 4.33602 4.48007 4.52227 4.55825 4.65627 4.68546 4.79126 4.83044 4.88376 4.90453 5.08144 5.12522 5.15392 5.17094 5.24361 5.28997 5.42909 5.58215 5.69598 5.85558 6.25514 6.81094 6.86111 6.94235 7.55419 8.48192 9.23188 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.003387 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.313521 B = 8264.944618 C = 8590.996169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C 0.083 3.917 4 N -0.483 5.483 5 C 0.061 3.939 6 C 0.575 3.425 7 O -0.573 6.573 8 N -0.585 5.585 9 C 0.088 3.912 10 C 0.112 3.888 11 C 0.163 3.837 12 N -0.634 5.634 13 C -0.238 4.238 14 H 0.089 0.911 15 C -0.066 4.066 16 N -0.954 5.954 17 Si 0.985 3.015 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.276 1.276 21 C 0.119 3.881 22 C -0.099 4.099 23 C -0.114 4.114 24 C -0.076 4.076 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.183 0.817 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.153 -10.886 2.520 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.077 4.077 4 N -0.193 5.193 5 C -0.077 4.077 6 C 0.362 3.638 7 O -0.452 6.452 8 N -0.315 5.315 9 C -0.054 4.054 10 C 0.008 3.992 11 C 0.036 3.964 12 N -0.361 5.361 13 C -0.366 4.366 14 H 0.107 0.893 15 C -0.259 4.259 16 N -0.602 5.602 17 Si 0.812 3.188 18 H -0.199 1.199 19 H -0.220 1.220 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.102 4.102 23 C -0.171 4.171 24 C -0.102 4.102 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.200 0.800 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.072 0.928 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.054 -10.044 2.922 25.316 hybrid contribution 0.951 0.078 -0.295 0.999 sum -22.103 -9.966 2.628 24.388 Atomic orbital electron populations 1.20852 0.86882 1.04688 1.04082 1.21526 0.99692 0.93085 0.96868 1.23216 0.88189 0.99755 0.96507 1.67526 1.10301 1.30146 1.11341 1.20580 0.92556 0.90847 1.03734 1.18503 0.87034 0.75396 0.82852 1.90738 1.69428 1.51183 1.33872 1.47897 1.07158 1.66862 1.09615 1.21807 0.96473 1.02144 0.85007 1.23448 0.77876 0.98230 0.99662 1.22490 0.87320 0.93122 0.93442 1.45985 1.10545 1.03059 1.76541 1.19377 0.88492 0.92957 1.35800 0.89328 1.25710 1.02679 0.94986 1.02530 1.70013 1.37907 0.97455 1.54801 0.85069 0.78950 0.76312 0.78475 1.19922 1.22015 1.20224 1.23046 0.91109 0.91477 0.95054 1.21015 0.95979 0.94841 0.98340 1.20837 0.99281 0.93851 1.03109 1.21761 0.91465 1.00296 0.96637 0.89123 0.89574 0.89899 0.80042 0.92405 0.90095 0.89841 0.88772 0.94534 0.94264 0.94110 0.92542 0.92080 0.90699 0.87394 0.92846 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.03 71.24 0.71 0.09 16 2 C -0.11 -1.53 5.91 -19.69 -0.12 -1.65 16 3 C 0.08 1.62 10.86 84.83 0.92 2.55 16 4 N -0.48 -13.98 10.29 -184.91 -1.90 -15.88 16 5 C 0.06 1.82 4.58 41.89 0.19 2.01 16 6 C 0.58 21.40 5.86 86.88 0.51 21.91 16 7 O -0.57 -25.46 16.61 -3.76 -0.06 -25.52 16 8 N -0.58 -21.17 3.09 -831.37 -2.57 -23.74 16 9 C 0.09 2.56 8.83 127.77 1.13 3.69 16 10 C 0.11 4.83 4.38 46.75 0.20 5.03 16 11 C 0.16 8.16 7.01 86.44 0.61 8.77 16 12 N -0.63 -33.69 3.70 -716.68 -2.65 -36.35 16 13 C -0.24 -13.65 10.70 84.04 0.90 -12.75 16 14 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 15 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.95 -58.83 11.39 21.65 0.25 -58.58 16 17 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 C 0.12 5.02 8.48 86.49 0.73 5.75 16 22 C -0.10 -2.20 5.93 -19.52 -0.12 -2.32 16 23 C -0.11 -2.21 9.55 71.24 0.68 -1.53 16 24 C -0.08 -1.13 9.52 22.45 0.21 -0.91 16 25 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 27 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 28 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 30 H 0.08 2.30 6.56 -2.39 -0.02 2.29 16 31 H 0.08 2.03 6.80 -2.39 -0.02 2.01 16 32 H 0.09 4.48 7.26 -2.39 -0.02 4.46 16 33 H 0.04 1.80 6.87 -2.39 -0.02 1.78 16 34 H 0.04 2.26 7.17 -2.39 -0.02 2.24 16 35 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.31 6.79 -2.39 -0.02 2.29 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.27 8.07 -2.39 -0.02 1.25 16 40 H 0.05 1.25 7.28 -2.39 -0.02 1.23 16 41 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -77.51 340.81 3.15 -74.36 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.03 Total: 10.04 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 7.04 Total: 27.29 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -6.88 Total: -134.55 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.06 Total: -25.52 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.51 3.15 -74.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043413516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.946 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds