Wall clock time and date at job start Fri Apr 10 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31883 * 119.62116 * 2 1 4 4 C 1.31856 * 121.72914 * 180.30976 * 3 2 1 5 5 C 1.38223 * 120.75869 * 359.70444 * 4 3 2 6 6 C 1.38629 * 119.16612 * 359.97438 * 5 4 3 7 7 C 1.38180 * 119.61591 * 179.72701 * 2 1 3 8 8 C 1.50703 * 120.41739 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47460 * 84.71918 * 8 7 2 10 10 O 1.21290 * 120.00051 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00325 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99829 * 0.02562 * 11 9 8 13 13 C 1.46504 * 120.00089 * 180.02562 * 11 9 8 14 14 C 1.53495 * 114.20492 * 120.00483 * 13 11 9 15 15 N 1.47064 * 87.98647 * 87.51761 * 14 13 11 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.07999 * 119.99903 * 6.59853 * 16 15 14 18 18 C 1.38814 * 120.00235 * 186.58664 * 16 15 14 19 19 N 1.31624 * 119.99708 * 6.45052 * 18 16 15 20 20 Si 1.86801 * 120.00252 * 186.44323 * 18 16 15 21 21 H 1.48498 * 109.47005 * 265.02404 * 20 18 16 22 22 H 1.48497 * 109.46829 * 25.02180 * 20 18 16 23 23 H 1.48501 * 109.47055 * 145.02388 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 H 1.09006 * 109.47032 * 270.27049 * 1 2 3 26 26 H 1.08994 * 109.47284 * 30.26454 * 1 2 3 27 27 H 1.08998 * 109.47504 * 150.26820 * 1 2 3 28 28 H 1.07992 * 119.61925 * 179.72802 * 4 3 2 29 29 H 1.08004 * 120.41837 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.79127 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47155 * 324.71679 * 8 7 2 32 32 H 1.09002 * 109.47235 * 204.72043 * 8 7 2 33 33 H 1.09001 * 109.47301 * 269.99894 * 12 11 9 34 34 H 1.09010 * 109.46951 * 29.99895 * 12 11 9 35 35 H 1.08999 * 109.47178 * 149.99412 * 12 11 9 36 36 H 1.09002 * 113.27922 * 346.93508 * 13 11 9 37 37 H 1.08996 * 113.46596 * 332.73658 * 14 13 11 38 38 H 1.09007 * 113.51449 * 202.30908 * 14 13 11 39 39 H 0.97002 * 119.99801 * 179.97438 * 19 18 16 40 40 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 41 41 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0061 5 6 4.2266 0.0340 -0.0066 6 6 3.5765 -1.1904 -0.0001 7 6 2.1898 -1.2013 0.0057 8 6 1.4371 -2.5068 0.0125 9 6 1.0723 -2.8838 -1.4002 10 8 1.3925 -2.1635 -2.3220 11 7 0.3911 -4.0219 -1.6395 12 6 0.0049 -4.8922 -0.5262 13 6 0.0370 -4.3886 -3.0130 14 6 0.6201 -5.7308 -3.4762 15 7 -0.5700 -6.3839 -2.9105 16 6 -0.8667 -7.6177 -2.3960 17 1 -0.0813 -8.3441 -2.2479 18 6 -2.1768 -7.9347 -2.0645 19 7 -3.1509 -7.1007 -2.3611 20 14 -2.5575 -9.5451 -1.1978 21 1 -2.9373 -10.5704 -2.2027 22 1 -1.3567 -10.0025 -0.4535 23 1 -3.6812 -9.3426 -0.2482 24 6 -1.3028 -5.1309 -3.1466 25 1 -0.3633 0.0049 1.0277 26 1 -0.3633 0.8875 -0.5179 27 1 -0.3634 -0.8923 -0.5096 28 1 3.9753 2.1528 -0.0103 29 1 5.3056 0.0802 -0.0120 30 1 4.1366 -2.1137 -0.0007 31 1 0.5290 -2.3996 0.6060 32 1 2.0644 -3.2857 0.4459 33 1 0.7957 -5.6194 -0.3422 34 1 -0.1504 -4.2898 0.3689 35 1 -0.9182 -5.4148 -0.7770 36 1 0.1707 -3.5737 -3.7245 37 1 1.5459 -6.0003 -2.9681 38 1 0.6919 -5.8229 -4.5600 39 1 -4.0665 -7.3224 -2.1298 40 1 -1.7384 -5.0641 -4.1436 41 1 -2.0152 -4.8894 -2.3577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043861347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:14 Heat of formation + Delta-G solvation = 67.152018 kcal Electronic energy + Delta-G solvation = -23105.801431 eV Core-core repulsion = 19795.161630 eV Total energy + Delta-G solvation = -3310.639801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64150 -39.58322 -37.74746 -34.13179 -33.70420 -33.00691 -32.12312 -28.96600 -27.91359 -27.14051 -26.14561 -24.63534 -23.54318 -22.62022 -21.91817 -20.04366 -18.22246 -17.11335 -16.89658 -16.55299 -16.42269 -15.60933 -15.07670 -14.86242 -14.82945 -14.30605 -13.80355 -13.62276 -13.16624 -13.06812 -12.93103 -12.67354 -12.53446 -12.42702 -12.20004 -12.04957 -11.82384 -11.38137 -11.34658 -11.05715 -10.92774 -10.67976 -10.16347 -9.95172 -9.84931 -9.52096 -9.48560 -9.45777 -8.90173 -8.75885 -8.01797 -6.97379 -5.87859 -3.19182 1.05654 1.25948 2.89778 3.31653 3.36346 3.38172 3.39843 3.79553 4.27597 4.37823 4.56898 4.71915 4.85920 4.89868 4.94476 5.20809 5.27093 5.38251 5.39176 5.45103 5.51504 5.56603 5.59391 5.62685 5.77865 6.04370 6.08585 6.11267 6.13840 6.17297 6.22249 6.44196 6.51481 6.64128 6.68040 6.87559 7.08462 7.23543 7.42635 7.84902 7.92233 7.97088 8.51895 8.94010 9.60030 10.54943 11.30110 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.003588 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.351717 B = 7800.882901 C = 7873.817662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.487 5.487 4 C 0.097 3.903 5 C -0.181 4.181 6 C -0.062 4.062 7 C -0.110 4.110 8 C -0.099 4.099 9 C 0.512 3.488 10 O -0.547 6.547 11 N -0.575 5.575 12 C 0.079 3.921 13 C 0.082 3.918 14 C 0.104 3.896 15 N -0.605 5.605 16 C -0.218 4.218 17 H 0.080 0.920 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.153 3.847 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.255 0.745 40 H 0.041 0.959 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 11.646 7.403 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 N -0.196 5.196 4 C -0.060 4.060 5 C -0.201 4.201 6 C -0.088 4.088 7 C -0.112 4.112 8 C -0.139 4.139 9 C 0.300 3.700 10 O -0.425 6.425 11 N -0.306 5.306 12 C -0.063 4.063 13 C -0.023 4.023 14 C -0.024 4.024 15 N -0.332 5.332 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.026 3.974 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.834 12.512 7.071 17.414 hybrid contribution 0.277 -1.976 0.241 2.010 sum 10.111 10.536 7.312 16.331 Atomic orbital electron populations 1.20761 0.88994 1.03963 1.02735 1.21066 0.96884 0.87672 0.93610 1.67507 1.10049 1.29151 1.12900 1.22670 0.89540 0.98314 0.95508 1.22039 1.01249 0.93412 1.03361 1.21438 0.93628 0.98545 0.95152 1.20160 0.94204 0.95090 1.01776 1.20670 1.01863 0.95258 0.96123 1.20327 0.78215 0.80945 0.90563 1.90686 1.54408 1.51504 1.45884 1.47366 1.54086 1.21428 1.07729 1.21916 1.03936 0.93568 0.86898 1.22724 1.00272 0.96655 0.82651 1.22842 0.92662 0.90354 0.96503 1.45859 1.07190 1.10716 1.69410 1.18919 0.92658 0.89367 1.33604 0.90186 1.24806 0.95253 0.98388 1.01792 1.69849 0.99183 1.36501 1.50901 0.86151 0.77765 0.83027 0.79122 1.21669 1.20517 1.21575 1.22399 0.92019 0.83567 0.99398 0.90377 0.90326 0.90598 0.82996 0.84980 0.85013 0.87592 0.87948 0.92934 0.92934 0.87372 0.88319 0.94102 0.94119 0.93540 0.94113 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.39 36.00 0.34 -0.94 16 2 C 0.15 1.99 6.78 -82.59 -0.56 1.43 16 3 N -0.49 -6.76 10.27 -9.48 -0.10 -6.86 16 4 C 0.10 1.10 11.18 -17.55 -0.20 0.91 16 5 C -0.18 -1.89 10.11 -39.44 -0.40 -2.29 16 6 C -0.06 -0.72 9.84 -39.28 -0.39 -1.10 16 7 C -0.11 -1.43 4.39 -104.48 -0.46 -1.89 16 8 C -0.10 -1.20 3.71 -29.04 -0.11 -1.31 16 9 C 0.51 8.31 6.87 -10.99 -0.08 8.23 16 10 O -0.55 -10.65 15.54 5.55 0.09 -10.56 16 11 N -0.58 -9.90 3.12 -173.56 -0.54 -10.44 16 12 C 0.08 1.29 9.34 59.84 0.56 1.85 16 13 C 0.08 1.57 4.69 -67.68 -0.32 1.25 16 14 C 0.10 2.11 8.31 -8.51 -0.07 2.04 16 15 N -0.61 -14.42 2.47 -184.62 -0.46 -14.87 16 16 C -0.22 -5.67 10.34 -15.06 -0.16 -5.83 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -25.64 11.81 55.49 0.66 -24.98 16 20 Si 0.91 20.90 29.56 -169.99 -5.02 15.88 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.15 3.40 6.25 -8.37 -0.05 3.35 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.96 6.14 -51.93 -0.32 0.64 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.11 1.11 6.28 -51.93 -0.33 0.78 16 32 H 0.10 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.67 6.44 -51.92 -0.33 0.33 16 35 H 0.11 2.20 5.38 -51.93 -0.28 1.92 16 36 H 0.10 1.88 7.29 -51.93 -0.38 1.50 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.60 6.71 -51.93 -0.35 1.25 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -31.70 336.25 -8.04 -39.75 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.75 Total: 1.56 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.98 Total: 5.46 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.44 Total: -57.15 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.70 -8.04 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043861347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.897 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds