Wall clock time and date at job start Fri Apr 10 2020 17:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31883 * 119.62116 * 2 1 4 4 C 1.31856 * 121.72914 * 180.30976 * 3 2 1 5 5 C 1.38223 * 120.75869 * 359.70444 * 4 3 2 6 6 C 1.38629 * 119.16612 * 359.97438 * 5 4 3 7 7 C 1.38180 * 119.61591 * 179.72701 * 2 1 3 8 8 C 1.50703 * 120.41739 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47460 * 84.71918 * 8 7 2 10 10 O 1.21290 * 120.00051 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00325 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99829 * 0.02562 * 11 9 8 13 13 C 1.46504 * 120.00089 * 180.02562 * 11 9 8 14 14 C 1.53495 * 114.20492 * 120.00483 * 13 11 9 15 15 N 1.47064 * 87.98647 * 87.51761 * 14 13 11 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.07999 * 119.99903 * 6.59853 * 16 15 14 18 18 C 1.38814 * 120.00235 * 186.58664 * 16 15 14 19 19 N 1.31624 * 119.99708 * 6.45052 * 18 16 15 20 20 Si 1.86801 * 120.00252 * 186.44323 * 18 16 15 21 21 H 1.48498 * 109.47005 * 265.02404 * 20 18 16 22 22 H 1.48497 * 109.46829 * 25.02180 * 20 18 16 23 23 H 1.48501 * 109.47055 * 145.02388 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 H 1.09006 * 109.47032 * 270.27049 * 1 2 3 26 26 H 1.08994 * 109.47284 * 30.26454 * 1 2 3 27 27 H 1.08998 * 109.47504 * 150.26820 * 1 2 3 28 28 H 1.07992 * 119.61925 * 179.72802 * 4 3 2 29 29 H 1.08004 * 120.41837 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.79127 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47155 * 324.71679 * 8 7 2 32 32 H 1.09002 * 109.47235 * 204.72043 * 8 7 2 33 33 H 1.09001 * 109.47301 * 269.99894 * 12 11 9 34 34 H 1.09010 * 109.46951 * 29.99895 * 12 11 9 35 35 H 1.08999 * 109.47178 * 149.99412 * 12 11 9 36 36 H 1.09002 * 113.27922 * 346.93508 * 13 11 9 37 37 H 1.08996 * 113.46596 * 332.73658 * 14 13 11 38 38 H 1.09007 * 113.51449 * 202.30908 * 14 13 11 39 39 H 0.97002 * 119.99801 * 179.97438 * 19 18 16 40 40 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 41 41 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0061 5 6 4.2266 0.0340 -0.0066 6 6 3.5765 -1.1904 -0.0001 7 6 2.1898 -1.2013 0.0057 8 6 1.4371 -2.5068 0.0125 9 6 1.0723 -2.8838 -1.4002 10 8 1.3925 -2.1635 -2.3220 11 7 0.3911 -4.0219 -1.6395 12 6 0.0049 -4.8922 -0.5262 13 6 0.0370 -4.3886 -3.0130 14 6 0.6201 -5.7308 -3.4762 15 7 -0.5700 -6.3839 -2.9105 16 6 -0.8667 -7.6177 -2.3960 17 1 -0.0813 -8.3441 -2.2479 18 6 -2.1768 -7.9347 -2.0645 19 7 -3.1509 -7.1007 -2.3611 20 14 -2.5575 -9.5451 -1.1978 21 1 -2.9373 -10.5704 -2.2027 22 1 -1.3567 -10.0025 -0.4535 23 1 -3.6812 -9.3426 -0.2482 24 6 -1.3028 -5.1309 -3.1466 25 1 -0.3633 0.0049 1.0277 26 1 -0.3633 0.8875 -0.5179 27 1 -0.3634 -0.8923 -0.5096 28 1 3.9753 2.1528 -0.0103 29 1 5.3056 0.0802 -0.0120 30 1 4.1366 -2.1137 -0.0007 31 1 0.5290 -2.3996 0.6060 32 1 2.0644 -3.2857 0.4459 33 1 0.7957 -5.6194 -0.3422 34 1 -0.1504 -4.2898 0.3689 35 1 -0.9182 -5.4148 -0.7770 36 1 0.1707 -3.5737 -3.7245 37 1 1.5459 -6.0003 -2.9681 38 1 0.6919 -5.8229 -4.5600 39 1 -4.0665 -7.3224 -2.1298 40 1 -1.7384 -5.0641 -4.1436 41 1 -2.0152 -4.8894 -2.3577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043861347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:13 Heat of formation + Delta-G solvation = 48.195157 kcal Electronic energy + Delta-G solvation = -23106.623462 eV Core-core repulsion = 19795.161630 eV Total energy + Delta-G solvation = -3311.461832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71250 -40.87926 -39.26704 -35.59479 -34.75124 -34.00383 -33.85932 -30.23114 -29.39200 -28.11638 -27.60938 -26.36715 -25.09926 -23.73349 -22.92053 -21.45353 -19.72404 -18.73654 -18.09679 -17.81440 -17.31899 -17.02821 -16.67206 -16.32989 -15.87553 -15.66497 -15.27461 -14.91444 -14.57379 -14.21053 -14.01258 -13.98778 -13.94188 -13.33589 -13.26717 -13.24869 -13.16370 -13.03110 -12.76573 -12.65184 -12.44120 -12.23372 -11.96517 -11.71702 -11.30974 -11.05873 -10.82807 -10.55670 -10.36924 -9.68448 -9.48086 -8.91002 -7.89311 -5.21383 0.17602 0.39126 1.49821 1.51090 1.59942 1.62896 2.06456 2.49412 2.86898 3.33011 3.43489 3.45790 3.64494 3.72967 3.83800 3.94522 4.00057 4.14147 4.38278 4.45383 4.52254 4.53917 4.56103 4.65519 4.70161 4.72651 4.76223 4.83128 4.86419 4.92117 5.08171 5.16279 5.19123 5.27181 5.34109 5.34972 5.48129 5.71750 5.84728 5.89536 6.57621 6.92087 7.08811 7.20847 7.61462 8.61681 9.28859 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.003588 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.351717 B = 7800.882901 C = 7873.817662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.122 3.878 3 N -0.515 5.515 4 C 0.086 3.914 5 C -0.177 4.177 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.089 4.089 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.580 5.580 12 C 0.088 3.912 13 C 0.104 3.896 14 C 0.107 3.893 15 N -0.622 5.622 16 C -0.221 4.221 17 H 0.084 0.916 18 C -0.056 4.056 19 N -0.950 5.950 20 Si 0.973 3.027 21 H -0.295 1.295 22 H -0.265 1.265 23 H -0.294 1.294 24 C 0.155 3.845 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.248 0.752 40 H 0.026 0.974 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 11.673 8.883 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.015 4.015 3 N -0.225 5.225 4 C -0.071 4.071 5 C -0.197 4.197 6 C -0.097 4.097 7 C -0.129 4.129 8 C -0.129 4.129 9 C 0.305 3.695 10 O -0.461 6.461 11 N -0.310 5.310 12 C -0.055 4.055 13 C -0.002 4.002 14 C -0.020 4.020 15 N -0.349 5.349 16 C -0.349 4.349 17 H 0.102 0.898 18 C -0.250 4.250 19 N -0.598 5.598 20 Si 0.801 3.199 21 H -0.223 1.223 22 H -0.189 1.189 23 H -0.221 1.221 24 C 0.028 3.972 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.196 0.804 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.929 12.542 8.563 19.311 hybrid contribution -0.272 -1.900 -0.260 1.937 sum 11.657 10.642 8.304 17.835 Atomic orbital electron populations 1.20748 0.88615 1.03052 1.03763 1.21326 0.97555 0.88196 0.94449 1.67508 1.11451 1.29574 1.13997 1.23232 0.89048 1.00102 0.94720 1.22417 1.02893 0.92616 1.01731 1.21820 0.93386 0.99963 0.94524 1.20286 0.95028 0.94935 1.02691 1.20684 1.03205 0.95786 0.93220 1.20995 0.76888 0.79617 0.92004 1.90672 1.55631 1.52270 1.47497 1.47440 1.54503 1.22135 1.06949 1.21834 1.01853 0.93985 0.87789 1.22368 0.97474 0.96055 0.84308 1.22917 0.91845 0.90317 0.96872 1.46028 1.08671 1.10473 1.69708 1.19215 0.92777 0.90033 1.32848 0.89846 1.25512 0.95184 1.01346 1.02962 1.70016 0.99105 1.38230 1.52475 0.85154 0.77657 0.79255 0.77796 1.22276 1.18915 1.22073 1.22292 0.93056 0.84072 0.97743 0.88387 0.91043 0.91593 0.80385 0.81764 0.83013 0.85712 0.85274 0.92593 0.88991 0.91545 0.88043 0.93216 0.93336 0.94270 0.95605 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 9.39 71.23 0.67 -1.75 16 2 C 0.12 3.20 6.78 42.54 0.29 3.49 16 3 N -0.52 -13.76 10.27 -183.90 -1.89 -15.65 16 4 C 0.09 1.78 11.18 84.69 0.95 2.72 16 5 C -0.18 -3.18 10.11 22.36 0.23 -2.96 16 6 C -0.07 -1.46 9.84 22.47 0.22 -1.23 16 7 C -0.13 -3.04 4.39 -19.77 -0.09 -3.12 16 8 C -0.09 -1.93 3.71 29.10 0.11 -1.82 16 9 C 0.51 15.85 6.87 87.65 0.60 16.45 16 10 O -0.58 -22.07 15.54 -3.06 -0.05 -22.12 16 11 N -0.58 -19.25 3.12 -821.39 -2.56 -21.81 16 12 C 0.09 2.72 9.34 127.77 1.19 3.91 16 13 C 0.10 3.95 4.69 45.55 0.21 4.17 16 14 C 0.11 4.27 8.31 83.18 0.69 4.96 16 15 N -0.62 -29.77 2.47 -738.03 -1.82 -31.59 16 16 C -0.22 -11.47 10.34 84.04 0.87 -10.60 16 17 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 18 C -0.06 -3.00 5.50 84.86 0.47 -2.53 16 19 N -0.95 -54.25 11.81 21.65 0.26 -53.99 16 20 Si 0.97 43.07 29.56 68.60 2.03 45.10 16 21 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.16 7.08 6.25 83.27 0.52 7.60 16 25 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.62 6.14 -2.39 -0.01 1.61 16 28 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 29 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.13 2.23 6.28 -2.39 -0.01 2.21 16 32 H 0.13 2.12 8.03 -2.39 -0.02 2.10 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.08 6.44 -2.38 -0.02 2.06 16 35 H 0.07 2.70 5.38 -2.39 -0.01 2.69 16 36 H 0.10 3.84 7.29 -2.39 -0.02 3.82 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.04 2.20 6.71 -2.39 -0.02 2.18 16 Total: -1.00 -69.26 336.25 3.92 -65.34 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.03 Total: 15.43 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.93 Total: 19.28 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -6.02 Total: -123.03 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.26 3.92 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043861347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.531 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds