Wall clock time and date at job start Fri Apr 10 2020 17:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38359 * 120.34814 * 2 1 4 4 N 1.31929 * 121.07688 * 179.97438 * 3 2 1 5 5 C 1.31689 * 121.87992 * 359.97438 * 4 3 2 6 6 C 1.39513 * 120.57051 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.56169 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99973 * 7.70796 * 7 6 5 9 9 N 1.34775 * 120.00115 * 187.70347 * 7 6 5 10 10 C 1.47421 * 125.64643 * 175.11526 * 9 7 6 11 11 C 1.54912 * 104.83278 * 204.16354 * 10 9 7 12 12 H 1.09001 * 111.00119 * 81.06307 * 11 10 9 13 13 C 1.52997 * 111.00764 * 204.87732 * 11 10 9 14 14 C 1.55401 * 101.66727 * 323.07641 * 11 10 9 15 15 H 1.09000 * 110.69595 * 277.04970 * 14 11 10 16 16 N 1.46494 * 110.85741 * 153.69531 * 14 11 10 17 17 C 1.36937 * 120.00214 * 160.08713 * 16 14 11 18 18 H 1.07997 * 119.99692 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99961 * 180.02562 * 17 16 14 20 20 N 1.31610 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47513 * 89.99397 * 21 19 17 23 23 H 1.48503 * 109.46810 * 209.99508 * 21 19 17 24 24 H 1.48504 * 109.47165 * 329.99323 * 21 19 17 25 25 C 1.47020 * 125.64752 * 355.15537 * 9 7 6 26 26 C 1.38355 * 120.34999 * 180.29939 * 2 1 3 27 27 H 1.09001 * 109.46473 * 90.00516 * 1 2 3 28 28 H 1.09000 * 109.47029 * 210.00366 * 1 2 3 29 29 H 1.08996 * 109.46892 * 330.00638 * 1 2 3 30 30 H 1.07999 * 119.46078 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.71034 * 180.02562 * 5 4 3 32 32 H 1.09002 * 110.37143 * 323.00004 * 10 9 7 33 33 H 1.08999 * 110.37016 * 85.21616 * 10 9 7 34 34 H 1.09001 * 109.46972 * 58.54959 * 13 11 10 35 35 H 1.09002 * 109.47112 * 178.54063 * 13 11 10 36 36 H 1.08995 * 109.47091 * 298.55050 * 13 11 10 37 37 H 0.97008 * 119.99992 * 340.08739 * 16 14 11 38 38 H 0.97007 * 120.00009 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.88348 * 298.32251 * 25 9 7 40 40 H 1.08999 * 109.88026 * 59.33944 * 25 9 7 41 41 H 1.08001 * 120.85751 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5253 1.2108 0.0005 5 6 4.2349 0.1015 0.0015 6 6 3.6055 -1.1436 0.0016 7 6 4.4024 -2.3888 0.0022 8 8 5.6086 -2.3384 0.1438 9 7 3.7915 -3.5800 -0.1542 10 6 4.4689 -4.8838 -0.2745 11 6 3.4618 -5.7857 -1.0308 12 1 3.5051 -5.6044 -2.1048 13 6 3.7054 -7.2631 -0.7167 14 6 2.1062 -5.3055 -0.4420 15 1 1.9028 -5.7987 0.5085 16 7 1.0144 -5.5358 -1.3912 17 6 -0.2810 -5.5744 -0.9487 18 1 -0.4976 -5.4345 0.1001 19 6 -1.3154 -5.7932 -1.8481 20 7 -1.0513 -5.9630 -3.1262 21 14 -3.0825 -5.8450 -1.2445 22 1 -3.6622 -4.4787 -1.2920 23 1 -3.8762 -6.7500 -2.1142 24 1 -3.1139 -6.3477 0.1525 25 6 2.3391 -3.7941 -0.2340 26 6 2.2061 -1.1939 -0.0062 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6630 2.1275 -0.0004 31 1 5.3136 0.1561 0.0023 32 1 5.3905 -4.7811 -0.8474 33 1 4.6806 -5.2938 0.7130 34 1 3.6145 -7.4261 0.3572 35 1 2.9684 -7.8722 -1.2402 36 1 4.7068 -7.5437 -1.0433 37 1 1.2090 -5.6611 -2.3332 38 1 -1.7743 -6.1156 -3.7548 39 1 1.8652 -3.4700 0.6925 40 1 1.9279 -3.2365 -1.0754 41 1 1.6859 -2.1404 -0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054543229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:26 Heat of formation + Delta-G solvation = 10.666056 kcal Electronic energy + Delta-G solvation = -23172.111301 eV Core-core repulsion = 19859.022085 eV Total energy + Delta-G solvation = -3313.089216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97367 -40.50794 -38.94953 -35.92935 -34.90142 -34.17293 -33.02757 -32.30516 -29.37687 -28.32036 -27.59884 -26.25744 -25.13224 -23.58846 -22.90024 -21.40892 -20.71780 -19.06636 -18.40482 -17.87526 -17.74058 -17.10004 -16.66050 -16.43068 -15.75142 -15.33232 -15.14797 -14.94830 -14.81556 -14.54499 -14.30969 -13.87274 -13.84945 -13.61881 -13.44828 -13.19290 -12.93275 -12.88068 -12.86052 -12.78534 -12.16114 -12.05262 -12.00882 -11.68004 -11.48184 -11.30768 -10.93934 -10.88827 -10.48366 -10.06247 -9.71582 -9.04216 -7.92063 -5.22102 -0.43372 0.11750 1.52382 1.53878 1.61265 1.67407 1.81936 2.58557 2.73994 3.15584 3.38406 3.44910 3.63007 3.76335 3.76971 3.78438 3.86446 3.94761 4.17374 4.21894 4.28058 4.42833 4.52285 4.54782 4.65842 4.72399 4.79213 4.81032 4.84670 4.91474 5.06969 5.09683 5.14551 5.18288 5.25179 5.32388 5.47840 5.58130 5.58705 6.27303 6.32370 6.78621 6.91739 7.36502 8.06798 8.31151 9.30718 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.005794 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.746833 B = 4831.120647 C = 6759.733257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.118 3.882 4 N -0.501 5.501 5 C 0.139 3.861 6 C -0.193 4.193 7 C 0.573 3.427 8 O -0.574 6.574 9 N -0.605 5.605 10 C 0.116 3.884 11 C -0.104 4.104 12 H 0.072 0.928 13 C -0.127 4.127 14 C 0.170 3.830 15 H 0.075 0.925 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.967 5.967 21 Si 0.964 3.036 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.268 1.268 25 C 0.073 3.927 26 C -0.084 4.084 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.193 0.807 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 7.873 7.516 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.039 4.039 4 N -0.209 5.209 5 C -0.019 4.019 6 C -0.198 4.198 7 C 0.363 3.637 8 O -0.455 6.455 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.124 4.124 12 H 0.090 0.910 13 C -0.185 4.185 14 C 0.060 3.940 15 H 0.093 0.907 16 N -0.358 5.358 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.617 5.617 21 Si 0.794 3.206 22 H -0.213 1.213 23 H -0.230 1.230 24 H -0.193 1.193 25 C -0.052 4.052 26 C -0.109 4.109 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.210 0.790 31 H 0.184 0.816 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.487 8.737 7.718 13.341 hybrid contribution -1.335 -0.936 -0.524 1.713 sum 5.152 7.800 7.195 11.796 Atomic orbital electron populations 1.20822 0.87758 1.04598 1.03609 1.21277 0.99357 0.93216 1.00353 1.23505 0.89512 0.99054 0.91814 1.67833 1.09059 1.30460 1.13551 1.22967 1.00988 0.86161 0.91748 1.20868 0.94943 0.94779 1.09190 1.17985 0.86512 0.82792 0.76364 1.90721 1.15079 1.87160 1.52577 1.48400 1.08610 1.06387 1.70196 1.22388 0.95856 0.81162 1.01179 1.22582 0.93789 0.96369 0.99635 0.91005 1.21559 1.01954 0.92765 1.02209 1.21532 0.87541 0.90874 0.94082 0.90730 1.42463 1.01757 1.85134 1.06489 1.19609 0.84003 1.39881 0.93625 0.89890 1.25450 1.01543 1.03268 0.95561 1.69803 1.31984 1.57478 1.02399 0.85283 0.80735 0.77130 0.77464 1.21280 1.23036 1.19322 1.23537 0.79182 1.01347 1.01122 1.23381 0.93127 1.02083 0.92351 0.90339 0.91096 0.88424 0.79040 0.81633 0.90468 0.89595 0.91470 0.93259 0.90865 0.79200 0.94121 0.90150 0.91241 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.03 71.24 0.71 -1.28 16 2 C -0.14 -3.21 5.89 -19.81 -0.12 -3.33 16 3 C 0.12 2.58 10.85 84.71 0.92 3.49 16 4 N -0.50 -13.42 10.35 -194.76 -2.01 -15.44 16 5 C 0.14 4.00 10.76 85.02 0.92 4.92 16 6 C -0.19 -5.78 5.89 -19.99 -0.12 -5.90 16 7 C 0.57 18.97 7.81 86.79 0.68 19.65 16 8 O -0.57 -21.53 16.70 -3.88 -0.06 -21.59 16 9 N -0.60 -18.44 3.33 -817.41 -2.72 -21.16 16 10 C 0.12 3.14 6.36 86.86 0.55 3.70 16 11 C -0.10 -2.96 3.25 -9.32 -0.03 -2.99 16 12 H 0.07 2.25 8.01 -2.39 -0.02 2.24 16 13 C -0.13 -3.13 9.30 71.98 0.67 -2.46 16 14 C 0.17 5.69 3.08 46.27 0.14 5.84 16 15 H 0.07 2.44 8.00 -2.39 -0.02 2.42 16 16 N -0.72 -31.42 5.18 -316.92 -1.64 -33.06 16 17 C -0.24 -11.63 9.98 84.03 0.84 -10.79 16 18 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 20 N -0.97 -54.91 13.06 21.65 0.28 -54.63 16 21 Si 0.96 42.21 29.55 68.60 2.03 44.24 16 22 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.07 2.26 4.62 86.73 0.40 2.67 16 26 C -0.08 -2.30 8.36 22.73 0.19 -2.11 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.35 8.10 -2.39 -0.02 1.34 16 29 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.17 4.57 7.68 -2.91 -0.02 4.55 16 32 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 33 H 0.09 2.07 8.04 -2.39 -0.02 2.05 16 34 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.38 18.19 7.72 -92.70 -0.72 17.47 16 38 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 39 H 0.08 2.29 6.81 -2.39 -0.02 2.27 16 40 H 0.07 2.39 6.54 -2.39 -0.02 2.37 16 41 H 0.17 4.79 2.94 -3.77 -0.01 4.78 16 Total: -1.00 -62.43 337.92 2.42 -60.01 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.33 Total: 33.18 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.22 Total: 8.45 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.09 Total: -124.29 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -62.43 2.42 -60.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054543229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.675 kcal (2) G-P(sol) polarization free energy of solvation -62.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds