Wall clock time and date at job start Fri Apr 10 2020 17:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39831 * 126.45964 * 2 1 4 4 C 1.35450 * 107.86749 * 179.97438 * 3 2 1 5 5 N 1.35539 * 108.86967 * 359.72778 * 4 3 2 6 6 H 0.97003 * 125.67972 * 180.30337 * 5 4 3 7 7 C 1.37647 * 108.64044 * 0.43745 * 5 4 3 8 8 C 1.46683 * 126.23291 * 179.82576 * 7 5 4 9 9 O 1.21692 * 120.00465 * 186.97550 * 8 7 5 10 10 N 1.34776 * 119.99845 * 6.97977 * 8 7 5 11 11 C 1.47355 * 125.52418 * 358.10512 * 10 8 7 12 12 C 1.54949 * 104.90116 * 156.78074 * 11 10 8 13 13 C 1.54786 * 101.45534 * 37.25505 * 12 11 10 14 14 H 1.09007 * 112.84263 * 86.23723 * 13 12 11 15 15 C 1.53517 * 109.68570 * 212.92486 * 13 12 11 16 16 N 1.46647 * 107.04988 * 84.83417 * 15 13 12 17 17 C 1.36935 * 125.28485 * 197.40247 * 16 15 13 18 18 H 1.08005 * 120.00384 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99782 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99974 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47336 * 59.99738 * 21 19 17 23 23 H 1.48502 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47176 * 299.99614 * 21 19 17 25 25 C 1.46486 * 109.42506 * 17.37782 * 16 15 13 26 26 C 1.48617 * 125.40302 * 178.84645 * 10 8 7 27 27 H 1.09006 * 113.54138 * 56.37119 * 26 10 8 28 28 H 1.09000 * 109.47339 * 270.04925 * 1 2 3 29 29 H 1.09010 * 109.46862 * 30.04714 * 1 2 3 30 30 H 1.09003 * 109.47378 * 150.04473 * 1 2 3 31 31 H 1.08001 * 126.06670 * 359.92494 * 3 2 1 32 32 H 1.07997 * 125.56970 * 180.02562 * 4 3 2 33 33 H 1.09004 * 110.34711 * 37.92411 * 11 10 8 34 34 H 1.08997 * 110.44412 * 275.68755 * 11 10 8 35 35 H 1.09005 * 111.02845 * 279.21350 * 12 11 10 36 36 H 1.08992 * 111.05855 * 155.31597 * 12 11 10 37 37 H 1.08997 * 109.91554 * 325.47525 * 15 13 12 38 38 H 1.09006 * 109.91635 * 204.18263 * 15 13 12 39 39 H 0.97005 * 120.00114 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.71468 * 117.76672 * 25 16 15 41 41 H 1.09003 * 109.71720 * 238.35849 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6626 0.0070 6 1 4.4190 -1.2245 0.0130 7 6 2.3262 -1.1089 0.0007 8 6 1.8897 -2.5093 0.0009 9 8 0.7107 -2.7792 -0.1331 10 7 2.7944 -3.4971 0.1496 11 6 4.2504 -3.3120 0.2808 12 6 4.7510 -4.5890 1.0017 13 6 3.8448 -5.6736 0.3706 14 1 4.2446 -6.0679 -0.5637 15 6 3.5552 -6.7711 1.4042 16 7 2.4122 -6.3182 2.2035 17 6 2.0491 -6.8250 3.4227 18 1 2.6233 -7.6240 3.8681 19 6 0.9430 -6.3119 4.0861 20 7 0.2436 -5.3379 3.5435 21 14 0.4482 -7.0027 5.7496 22 1 1.5624 -6.8179 6.7137 23 1 -0.7567 -6.2888 6.2435 24 1 0.1456 -8.4502 5.6143 25 6 1.7195 -5.2391 1.4952 26 6 2.4839 -4.9498 0.1918 27 1 1.9437 -5.3053 -0.6858 28 1 -0.3634 0.0009 1.0276 29 1 -0.3633 0.8897 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 2.0137 2.1548 -0.0011 32 1 4.4973 1.3251 0.0011 33 1 4.4676 -2.4281 0.8806 34 1 4.7133 -3.2254 -0.7022 35 1 4.5878 -4.5203 2.0773 36 1 5.8010 -4.7783 0.7789 37 1 4.4240 -6.9147 2.0465 38 1 3.3073 -7.7033 0.8964 39 1 -0.5292 -4.9790 4.0073 40 1 0.6999 -5.5469 1.2630 41 1 1.7006 -4.3440 2.1169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075750267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:36 Heat of formation + Delta-G solvation = 59.452115 kcal Electronic energy + Delta-G solvation = -23902.603725 eV Core-core repulsion = 20591.630031 eV Total energy + Delta-G solvation = -3310.973694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33130 -39.64013 -37.54140 -35.03881 -32.67794 -31.99450 -30.71170 -29.88032 -28.41831 -27.25726 -26.18397 -24.55253 -23.10965 -21.51064 -20.99558 -20.01841 -19.16870 -18.77744 -17.55869 -16.82733 -15.90196 -15.66282 -15.04976 -14.66748 -14.41999 -13.85290 -13.73767 -13.51131 -13.39440 -12.93483 -12.66482 -12.60330 -12.41017 -12.20030 -12.08026 -11.76228 -11.46745 -11.38036 -11.22876 -10.98923 -10.75253 -10.58374 -10.24307 -10.06811 -9.89158 -9.69392 -9.45721 -8.68344 -8.56320 -8.33260 -7.94757 -6.79491 -5.64572 -3.01902 1.69683 2.83595 3.10700 3.32662 3.42754 3.46667 3.49379 3.72921 4.52248 4.61564 4.68481 4.92151 5.06084 5.12465 5.27659 5.34236 5.40461 5.47250 5.53866 5.60449 5.76717 5.86156 5.88223 5.97595 6.04330 6.12699 6.16673 6.28741 6.30794 6.50368 6.54786 6.57762 6.59661 6.81197 6.88380 7.10388 7.44717 7.60552 7.65555 7.91743 7.94362 8.32517 8.58326 9.25927 9.86753 10.49289 11.44576 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.005405 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.797278 B = 5179.204438 C = 6067.801231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.080 4.080 3 C -0.211 4.211 4 C 0.010 3.990 5 N -0.546 5.546 6 H 0.416 0.584 7 C -0.044 4.044 8 C 0.599 3.401 9 O -0.514 6.514 10 N -0.610 5.610 11 C 0.091 3.909 12 C -0.118 4.118 13 C -0.112 4.112 14 H 0.088 0.912 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.238 4.238 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.179 3.821 26 C 0.117 3.883 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.886 9.876 -9.317 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.236 4.236 4 C -0.126 4.126 5 N -0.148 5.148 6 H 0.260 0.740 7 C -0.157 4.157 8 C 0.389 3.611 9 O -0.389 6.389 10 N -0.345 5.345 11 C -0.033 4.033 12 C -0.156 4.156 13 C -0.132 4.132 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.366 4.366 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.559 5.559 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.054 3.946 26 C 0.015 3.985 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.115 9.689 -9.233 16.776 hybrid contribution 0.304 -0.401 0.944 1.070 sum 10.420 9.289 -8.289 16.234 Atomic orbital electron populations 1.20357 0.89362 1.02765 1.02373 1.19935 0.95921 0.90681 1.02291 1.20755 0.91881 0.98593 1.12392 1.21952 0.99392 0.83380 1.07829 1.42803 1.07654 1.07284 1.57106 0.73992 1.20359 0.83551 0.93721 1.18076 1.16663 0.85125 0.82199 0.77160 1.90836 1.15737 1.82518 1.49802 1.48825 1.06043 1.06971 1.72652 1.22469 0.82066 0.99383 0.99350 1.22734 0.98648 0.92695 1.01488 1.22955 0.94662 0.96545 0.99037 0.89364 1.21065 0.91680 0.93792 0.91624 1.44123 1.29000 1.40454 1.19312 1.18942 1.09423 1.15061 0.93147 0.90442 1.24854 0.97942 0.98511 0.98856 1.69990 1.19915 1.27888 1.38102 0.86226 0.77757 0.78222 0.83663 1.21236 1.21579 1.21119 1.21269 0.93626 0.92506 0.87246 1.23118 0.96516 0.77544 1.01344 0.89643 0.91518 0.92351 0.89850 0.84284 0.81569 0.91557 0.91719 0.89308 0.90302 0.94357 0.96487 0.93542 0.93594 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.91 36.01 0.36 -1.05 16 2 C -0.08 -1.26 6.21 -104.16 -0.65 -1.91 16 3 C -0.21 -2.67 10.76 -39.98 -0.43 -3.10 16 4 C 0.01 0.11 11.89 -16.91 -0.20 -0.09 16 5 N -0.55 -6.76 5.40 -9.39 -0.05 -6.81 16 6 H 0.42 4.11 5.17 -40.82 -0.21 3.90 16 7 C -0.04 -0.74 6.85 -81.98 -0.56 -1.30 16 8 C 0.60 11.82 7.51 -12.85 -0.10 11.72 16 9 O -0.51 -11.95 14.90 5.20 0.08 -11.87 16 10 N -0.61 -10.91 2.85 -162.35 -0.46 -11.37 16 11 C 0.09 1.19 5.43 -2.55 -0.01 1.17 16 12 C -0.12 -1.63 6.35 -24.76 -0.16 -1.79 16 13 C -0.11 -1.81 3.92 -88.26 -0.35 -2.16 16 14 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 15 C 0.15 2.88 6.51 -3.69 -0.02 2.86 16 16 N -0.60 -15.41 3.37 -172.28 -0.58 -15.99 16 17 C -0.24 -6.68 10.25 -15.06 -0.15 -6.83 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 20 N -0.91 -28.00 10.23 55.49 0.57 -27.43 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.18 4.57 4.67 -3.61 -0.02 4.55 16 26 C 0.12 2.31 3.90 -65.17 -0.25 2.06 16 27 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.08 1.45 6.36 -51.93 -0.33 1.12 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.78 5.54 -51.93 -0.29 0.50 16 34 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.09 1.51 7.93 -51.93 -0.41 1.10 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.05 1.36 7.51 -51.93 -0.39 0.97 16 41 H 0.06 1.66 6.86 -51.93 -0.36 1.31 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -34.74 323.80 -8.98 -43.72 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.75 Total: 3.45 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.64 Total: 3.91 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.53 Total: -61.61 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.74 -8.98 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075750267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.170 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds