Wall clock time and date at job start Fri Apr 10 2020 17:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 120.50155 * 2 1 4 4 N 1.31791 * 120.89550 * 180.28948 * 3 2 1 5 5 C 1.31829 * 122.05081 * 359.73660 * 4 3 2 6 6 C 1.38124 * 120.89382 * 0.02562 * 5 4 3 7 7 C 1.39796 * 120.49483 * 179.77426 * 2 1 3 8 8 C 1.48148 * 120.92899 * 359.97438 * 7 2 1 9 9 O 1.21517 * 119.99692 * 353.65260 * 8 7 2 10 10 N 1.34772 * 120.00106 * 173.64964 * 8 7 2 11 11 C 1.46504 * 119.99903 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.64323 * 31.85716 * 11 10 8 13 13 C 1.54326 * 110.71958 * 268.52515 * 11 10 8 14 14 N 1.47026 * 107.27007 * 219.44383 * 13 11 10 15 15 C 1.36935 * 125.64761 * 178.91551 * 14 13 11 16 16 H 1.07996 * 120.00110 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00044 * 0.02890 * 15 14 13 18 18 N 1.31625 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00217 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47168 * 59.99668 * 19 17 15 21 21 H 1.48502 * 109.47291 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46728 * 299.99967 * 19 17 15 23 23 C 1.47419 * 108.70206 * 358.93978 * 14 13 11 24 24 C 1.54907 * 104.83683 * 24.12876 * 23 14 13 25 25 H 1.09002 * 111.03771 * 81.07248 * 24 23 14 26 26 C 1.52993 * 111.01100 * 204.91596 * 24 23 14 27 27 H 1.09003 * 109.47114 * 263.89311 * 1 2 3 28 28 H 1.08992 * 109.47385 * 23.89028 * 1 2 3 29 29 H 1.08998 * 109.47601 * 143.89470 * 1 2 3 30 30 H 1.08010 * 119.55019 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.55317 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.49642 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00279 * 0.02562 * 10 8 7 34 34 H 1.09010 * 109.88179 * 338.85978 * 13 11 10 35 35 H 1.08994 * 109.88582 * 100.02409 * 13 11 10 36 36 H 0.96993 * 120.00115 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36746 * 265.28861 * 23 14 13 38 38 H 1.09001 * 110.36664 * 142.96577 * 23 14 13 39 39 H 1.08997 * 109.47637 * 172.19378 * 26 24 23 40 40 H 1.09004 * 109.46912 * 52.19046 * 26 24 23 41 41 H 1.09004 * 109.47032 * 292.19921 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 -0.0057 5 6 4.2334 0.0870 -0.0065 6 6 3.6137 -1.1473 -0.0019 7 6 2.2164 -1.2046 0.0047 8 6 1.5078 -2.5056 0.0104 9 8 0.2987 -2.5383 0.1274 10 7 2.2041 -3.6527 -0.1141 11 6 1.5032 -4.9392 -0.1091 12 1 0.5110 -4.8380 -0.5487 13 6 1.4146 -5.5071 1.3232 14 7 1.6345 -6.9579 1.2319 15 6 1.6560 -7.8298 2.2876 16 1 1.8265 -8.8823 2.1153 17 6 1.4585 -7.3610 3.5791 18 7 1.2511 -6.0783 3.7891 19 14 1.4870 -8.5505 5.0191 20 1 2.8097 -9.2227 5.0798 21 1 1.2515 -7.8050 6.2817 22 1 0.4216 -9.5695 4.8405 23 6 1.8287 -7.3184 -0.1843 24 6 2.3289 -6.0172 -0.8598 25 1 3.3971 -5.8763 -0.6947 26 6 2.0031 -6.0150 -2.3547 27 1 -0.3633 -0.1093 1.0219 28 1 -0.3634 0.9395 -0.4162 29 1 -0.3634 -0.8302 -0.6055 30 1 1.6691 2.1264 0.0004 31 1 5.3120 0.1415 -0.0117 32 1 4.1994 -2.0547 -0.0030 33 1 3.1692 -3.6266 -0.2072 34 1 2.1832 -5.0543 1.9497 35 1 0.4279 -5.3073 1.7408 36 1 1.1134 -5.7507 4.6916 37 1 0.8853 -7.6374 -0.6274 38 1 2.5772 -8.1054 -0.2762 39 1 2.2385 -5.0379 -2.7765 40 1 0.9430 -6.2258 -2.4958 41 1 2.5956 -6.7799 -2.8568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079670076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:57 Heat of formation + Delta-G solvation = 2.676400 kcal Electronic energy + Delta-G solvation = -23079.891787 eV Core-core repulsion = 19766.456114 eV Total energy + Delta-G solvation = -3313.435674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81516 -40.42389 -39.06376 -35.80760 -34.53830 -34.39168 -32.92809 -32.16563 -29.69268 -28.29325 -27.37835 -25.97541 -25.01388 -23.30258 -22.41711 -21.59995 -21.23225 -18.99941 -18.89718 -17.88418 -17.09919 -16.83638 -16.42321 -16.20270 -16.12525 -15.63466 -15.23628 -14.87657 -14.71484 -14.39601 -14.27910 -14.10669 -13.78249 -13.61409 -13.38681 -13.30236 -13.03835 -12.86732 -12.59497 -12.50911 -12.26827 -12.04637 -11.87260 -11.69075 -11.48353 -11.25737 -10.90012 -10.75506 -10.38058 -10.07266 -9.89606 -8.94540 -7.86653 -5.24420 -0.33436 0.08138 1.43743 1.47603 1.53913 1.81666 2.01284 2.48292 2.81242 3.31999 3.42462 3.49182 3.63704 3.74421 3.79503 3.83045 3.97692 4.03088 4.08294 4.41521 4.45465 4.58754 4.63367 4.70421 4.75354 4.78428 4.84250 4.87319 5.03810 5.05924 5.08835 5.14670 5.26664 5.41276 5.43954 5.47985 5.59218 5.63328 5.75234 6.14750 6.46690 6.89034 7.04250 7.13932 7.74102 8.37575 9.22540 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.004343 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.634143 B = 6446.060338 C = 7148.505824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C 0.093 3.907 4 N -0.483 5.483 5 C 0.087 3.913 6 C -0.131 4.131 7 C -0.108 4.108 8 C 0.550 3.450 9 O -0.561 6.561 10 N -0.693 5.693 11 C 0.136 3.864 12 H 0.078 0.922 13 C 0.188 3.812 14 N -0.628 5.628 15 C -0.244 4.244 16 H 0.089 0.911 17 C -0.068 4.068 18 N -0.954 5.954 19 Si 0.980 3.020 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.277 1.277 23 C 0.132 3.868 24 C -0.094 4.094 25 H 0.094 0.906 26 C -0.129 4.129 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.187 0.813 31 H 0.194 0.806 32 H 0.162 0.838 33 H 0.412 0.588 34 H 0.018 0.982 35 H -0.010 1.010 36 H 0.244 0.756 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 10.920 -13.148 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.064 4.064 4 N -0.192 5.192 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.119 4.119 8 C 0.338 3.662 9 O -0.441 6.441 10 N -0.344 5.344 11 C 0.030 3.970 12 H 0.096 0.904 13 C 0.062 3.938 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.107 0.893 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.203 1.203 23 C 0.007 3.993 24 C -0.114 4.114 25 H 0.112 0.888 26 C -0.187 4.187 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.204 0.796 31 H 0.211 0.789 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.036 0.964 35 H 0.008 0.992 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.108 11.647 -12.869 18.400 hybrid contribution -0.456 -1.467 1.426 2.096 sum 5.651 10.180 -11.443 16.325 Atomic orbital electron populations 1.20894 0.89139 1.03891 1.02931 1.21293 0.98695 0.92840 0.96567 1.23084 0.89752 0.97731 0.95861 1.67612 1.08602 1.32551 1.10429 1.23243 1.01994 0.86475 0.95225 1.22625 0.92843 1.01688 0.97968 1.20293 0.95047 0.92862 1.03718 1.18613 0.86850 0.84572 0.76144 1.90729 1.15354 1.87607 1.50388 1.45647 1.11226 1.04689 1.72828 1.22116 0.96349 0.82265 0.96236 0.90395 1.21106 0.96896 0.83834 0.91984 1.44712 1.84591 1.03716 1.02404 1.19496 1.41524 0.90511 0.85710 0.89323 1.25708 1.02302 0.97816 1.00227 1.70221 1.56484 1.13766 1.19854 0.85132 0.78428 0.77635 0.78039 1.19672 1.22448 1.20296 1.21863 0.97916 0.96118 0.83388 1.22553 0.99768 0.93106 0.95932 0.88810 1.21654 1.01870 1.02887 0.92261 0.91694 0.88884 0.90960 0.79573 0.78906 0.82015 0.75028 0.96361 0.99162 0.94659 0.95664 0.92537 0.91479 0.93019 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.83 71.24 0.63 -2.14 16 2 C -0.09 -2.29 5.93 -19.50 -0.12 -2.40 16 3 C 0.09 1.95 10.83 84.68 0.92 2.86 16 4 N -0.48 -10.52 10.33 -196.01 -2.03 -12.55 16 5 C 0.09 1.59 11.17 84.67 0.95 2.54 16 6 C -0.13 -2.67 9.60 22.63 0.22 -2.45 16 7 C -0.11 -2.94 5.91 -19.88 -0.12 -3.05 16 8 C 0.55 18.66 7.73 86.88 0.67 19.33 16 9 O -0.56 -23.26 13.18 -3.77 -0.05 -23.31 16 10 N -0.69 -21.61 5.06 -439.49 -2.22 -23.84 16 11 C 0.14 5.12 2.79 46.18 0.13 5.25 16 12 H 0.08 3.17 7.44 -2.39 -0.02 3.15 16 13 C 0.19 9.65 5.12 86.73 0.44 10.10 16 14 N -0.63 -32.39 3.39 -691.99 -2.35 -34.74 16 15 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 18 N -0.95 -59.63 10.31 21.65 0.22 -59.41 16 19 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 C 0.13 5.13 6.70 86.86 0.58 5.71 16 24 C -0.09 -2.85 3.27 -9.40 -0.03 -2.88 16 25 H 0.09 2.58 8.01 -2.39 -0.02 2.56 16 26 C -0.13 -2.90 9.31 71.98 0.67 -2.23 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.62 8.06 -2.39 -0.02 1.60 16 29 H 0.07 2.16 5.96 -2.39 -0.01 2.15 16 30 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.16 2.41 6.58 -2.91 -0.02 2.39 16 33 H 0.41 9.87 6.74 -92.71 -0.62 9.25 16 34 H 0.02 1.04 7.27 -2.38 -0.02 1.02 16 35 H -0.01 -0.61 7.51 -2.39 -0.02 -0.63 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.03 0.98 7.98 -2.39 -0.02 0.96 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.23 8.07 -2.38 -0.02 1.21 16 41 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -76.58 334.58 2.29 -74.29 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.41 Total: 16.85 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.27 Total: 14.29 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -6.38 Total: -130.53 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -76.58 2.29 -74.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079670076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.964 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds